RNA–Protein interactions for RNA: ENST00000602088.7

SSBP4-213, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 622 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-213ENST00000602088 PTF1AQ7RTS3 328 aa22.74■■□□□ 1.23
SSBP4-213ENST00000602088 EZH2Q15910 746 aaKnown RBP22.73■■□□□ 1.23
SSBP4-213ENST00000602088 SHANK3Q9BYB0 1731 aa22.72■■□□□ 1.23
SSBP4-213ENST00000602088 CNGB1Q14028 1251 aaPredicted RBP22.72■■□□□ 1.23
SSBP4-213ENST00000602088 KCNQ2O43526 872 aa22.71■■□□□ 1.23
SSBP4-213ENST00000602088 MTHFSP49914 203 aa22.71■■□□□ 1.23
SSBP4-213ENST00000602088 PARD3Q8TEW0 1356 aa22.71■■□□□ 1.23
SSBP4-213ENST00000602088 ACSBG1Q96GR2 724 aa22.7■■□□□ 1.22
SSBP4-213ENST00000602088 IGSF1Q8N6C5 1336 aa22.7■■□□□ 1.22
SSBP4-213ENST00000602088 PLSCR1O15162 318 aa22.69■■□□□ 1.22
SSBP4-213ENST00000602088 NHSQ6T4R5 1651 aa22.68■■□□□ 1.22
SSBP4-213ENST00000602088 PCDH11XQ9BZA7 1347 aa22.66■■□□□ 1.22
SSBP4-213ENST00000602088 PCDH11YQ9BZA8 1340 aa22.66■■□□□ 1.22
SSBP4-213ENST00000602088 KAT6BQ8WYB5 2073 aa22.66■■□□□ 1.22
SSBP4-213ENST00000602088 IL13P35225 146 aa22.66■■□□□ 1.22
SSBP4-213ENST00000602088 CYP27B1O15528 508 aa22.65■■□□□ 1.22
SSBP4-213ENST00000602088 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.65■■□□□ 1.22
SSBP4-213ENST00000602088 PKD1L3Q7Z443 1732 aa22.65■■□□□ 1.22
SSBP4-213ENST00000602088 RREB1Q92766 1687 aa22.65■■□□□ 1.22
SSBP4-213ENST00000602088 RGPD3A6NKT7 1758 aaPredicted RBP22.64■■□□□ 1.22
SSBP4-213ENST00000602088 RGPD4Q7Z3J3 1758 aa22.64■■□□□ 1.22
SSBP4-213ENST00000602088 SPG7Q9UQ90 795 aa22.64■■□□□ 1.21
SSBP4-213ENST00000602088 PLEKHG2Q9H7P9 1386 aa22.63■■□□□ 1.21
SSBP4-213ENST00000602088 PRIM1P49642 420 aaKnown RBP22.61■■□□□ 1.21
SSBP4-213ENST00000602088 AEBP1Q8IUX7 1158 aa22.61■■□□□ 1.21
SSBP4-213ENST00000602088 PROM2Q8N271 834 aa22.61■■□□□ 1.21
SSBP4-213ENST00000602088 BTAF1O14981 1849 aa22.6■■□□□ 1.21
SSBP4-213ENST00000602088 DIAPH1O60610 1272 aaKnown RBP22.6■■□□□ 1.21
SSBP4-213ENST00000602088 DOT1LQ8TEK3 1739 aa22.6■■□□□ 1.21
SSBP4-213ENST00000602088 NKX1-1Q15270 411 aaPredicted RBP22.59■■□□□ 1.21
SSBP4-213ENST00000602088 SULT6B1Q6IMI4 303 aa22.59■■□□□ 1.21
SSBP4-213ENST00000602088 SYTL4Q96C24 671 aaPredicted RBP22.59■■□□□ 1.21
SSBP4-213ENST00000602088 KDRP35968 1356 aa22.59■■□□□ 1.21
SSBP4-213ENST00000602088 NUP188Q5SRE5 1749 aa22.59■■□□□ 1.21
SSBP4-213ENST00000602088 PPP2R1AP30153 589 aa22.58■■□□□ 1.21
SSBP4-213ENST00000602088 DDX10Q13206 875 aaKnown RBP22.58■■□□□ 1.21
SSBP4-213ENST00000602088 TXNRD1Q16881 649 aa22.58■■□□□ 1.21
SSBP4-213ENST00000602088 COL3A1P02461 1466 aaPredicted RBP22.57■■□□□ 1.2
SSBP4-213ENST00000602088 SRCAPQ6ZRS2 3230 aa22.56■■□□□ 1.2
SSBP4-213ENST00000602088 PHKG2P15735 406 aa22.56■■□□□ 1.2
SSBP4-213ENST00000602088 PLEKHO1Q53GL0 409 aaPredicted RBP22.56■■□□□ 1.2
SSBP4-213ENST00000602088 IFNL2Q8IZJ0 200 aa22.56■■□□□ 1.2
SSBP4-213ENST00000602088 PSDA5PKW4 1024 aaPredicted RBP22.55■■□□□ 1.2
SSBP4-213ENST00000602088 R3HDM1Q15032 1099 aaKnown RBP22.55■■□□□ 1.2
SSBP4-213ENST00000602088 AMOTQ4VCS5 1084 aa22.55■■□□□ 1.2
SSBP4-213ENST00000602088 NBPF14Q5TI25 921 aa22.55■■□□□ 1.2
SSBP4-213ENST00000602088 HMOX1P09601 288 aa22.53■■□□□ 1.2
SSBP4-213ENST00000602088 CFAP53Q96M91 514 aa22.53■■□□□ 1.2
SSBP4-213ENST00000602088 TOGARAM1Q9Y4F4 1720 aa22.52■■□□□ 1.2
SSBP4-213ENST00000602088 ZNF530Q6P9A1 599 aaPredicted RBP22.5■■□□□ 1.19
SSBP4-213ENST00000602088 MPRIPQ6WCQ1 1025 aa22.5■■□□□ 1.19
SSBP4-213ENST00000602088 U2SURPO15042 1029 aaKnown RBP22.49■■□□□ 1.19
SSBP4-213ENST00000602088 ANO8Q9HCE9 1232 aaPredicted RBP22.49■■□□□ 1.19
SSBP4-213ENST00000602088 ITGB4P16144 1822 aa22.49■■□□□ 1.19
SSBP4-213ENST00000602088 LRRC4BQ9NT99 713 aa22.48■■□□□ 1.19
SSBP4-213ENST00000602088 HSP90AB1P08238 724 aaKnown RBP22.47■■□□□ 1.19
SSBP4-213ENST00000602088 SLC27A3Q5K4L6 730 aa22.47■■□□□ 1.19
SSBP4-213ENST00000602088 DCAF5Q96JK2 942 aa22.47■■□□□ 1.19
SSBP4-213ENST00000602088 LY75O60449 1722 aa22.46■■□□□ 1.19
SSBP4-213ENST00000602088 C1orf141Q5JVX7 400 aa22.46■■□□□ 1.19
SSBP4-213ENST00000602088 PIGBQ92521 554 aa22.46■■□□□ 1.19
SSBP4-213ENST00000602088 RALBP1Q15311 655 aa22.45■■□□□ 1.18
SSBP4-213ENST00000602088 NUDCQ9Y266 331 aa22.45■■□□□ 1.18
SSBP4-213ENST00000602088 ERVV-2B6SEH9 535 aa22.44■■□□□ 1.18
SSBP4-213ENST00000602088 TMOD3Q9NYL9 352 aa22.44■■□□□ 1.18
SSBP4-213ENST00000602088 SLC15A2Q16348 729 aa22.43■■□□□ 1.18
SSBP4-213ENST00000602088 STK32BQ9NY57 414 aa22.43■■□□□ 1.18
SSBP4-213ENST00000602088 PAPPAQ13219 1627 aa22.42■■□□□ 1.18
SSBP4-213ENST00000602088 KDM6AO15550 1401 aaPredicted RBP22.42■■□□□ 1.18
SSBP4-213ENST00000602088 KCNQ4P56696 695 aa22.42■■□□□ 1.18
SSBP4-213ENST00000602088 AKAP4Q5JQC9 854 aa22.42■■□□□ 1.18
SSBP4-213ENST00000602088 SMARCC1Q92922 1105 aaPredicted RBP22.42■■□□□ 1.18
SSBP4-213ENST00000602088 PALLDQ8WX93 1383 aa22.41■■□□□ 1.18
SSBP4-213ENST00000602088 MTHFSDQ2M296 383 aaKnown RBP22.41■■□□□ 1.18
SSBP4-213ENST00000602088 CCNL1Q9UK58 526 aaPredicted RBP22.41■■□□□ 1.18
SSBP4-213ENST00000602088 RSPH6AQ9H0K4 717 aa22.4■■□□□ 1.18
SSBP4-213ENST00000602088 ZNF316A6NFI3 1004 aaPredicted RBP22.39■■□□□ 1.17
SSBP4-213ENST00000602088 U2AF1L5P0DN76 240 aaPredicted RBP22.39■■□□□ 1.17
SSBP4-213ENST00000602088 U2AF1Q01081 240 aaKnown RBP eCLIP22.39■■□□□ 1.17
SSBP4-213ENST00000602088 ASAP1Q9ULH1 1129 aa22.39■■□□□ 1.17
SSBP4-213ENST00000602088 CABP4P57796 275 aa22.38■■□□□ 1.17
SSBP4-213ENST00000602088 ZNF827Q17R98 1081 aa22.38■■□□□ 1.17
SSBP4-213ENST00000602088 AKT1S1Q96B36 256 aa22.38■■□□□ 1.17
SSBP4-213ENST00000602088 FCHSD2O94868 740 aa22.37■■□□□ 1.17
SSBP4-213ENST00000602088 PRKAR2BP31323 418 aa22.37■■□□□ 1.17
SSBP4-213ENST00000602088 ATG3Q9NT62 314 aa22.37■■□□□ 1.17
SSBP4-213ENST00000602088 SCN11AQ9UI33 1791 aa22.36■■□□□ 1.17
SSBP4-213ENST00000602088 PHACTR3Q96KR7 559 aa22.36■■□□□ 1.17
SSBP4-213ENST00000602088 LGR6Q9HBX8 967 aa22.36■■□□□ 1.17
SSBP4-213ENST00000602088 NFATC2IPQ8NCF5 419 aa22.35■■□□□ 1.17
SSBP4-213ENST00000602088 PDGFDQ9GZP0 370 aaPredicted RBP22.35■■□□□ 1.17
SSBP4-213ENST00000602088 LRP5O75197 1615 aa22.35■■□□□ 1.17
SSBP4-213ENST00000602088 MYBBP1AQ9BQG0 1328 aaKnown RBP22.34■■□□□ 1.17
SSBP4-213ENST00000602088 RNMTO43148 476 aaKnown RBP22.34■■□□□ 1.17
SSBP4-213ENST00000602088 GAS2L2Q8NHY3 880 aa22.34■■□□□ 1.17
SSBP4-213ENST00000602088 CASZ1Q86V15 1759 aa22.34■■□□□ 1.17
SSBP4-213ENST00000602088 HMGB2P26583 209 aaKnown RBP22.33■■□□□ 1.17
SSBP4-213ENST00000602088 PRKRIP1Q9H875 184 aaPredicted RBP22.33■■□□□ 1.17
SSBP4-213ENST00000602088 LOC102724428A0A0B4J2F2 783 aa22.32■■□□□ 1.16
SSBP4-213ENST00000602088 SIK1P57059 783 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms