RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 U2SURPO15042 1029 aaKnown RBP25.93■■□□□ 1.74
UPF1-209ENST00000600310 BRWD3Q6RI45 1802 aa25.93■■□□□ 1.74
UPF1-209ENST00000600310 ZCRB1Q8TBF4 217 aaKnown RBP25.91■■□□□ 1.74
UPF1-209ENST00000600310 PLEKHG2Q9H7P9 1386 aa25.9■■□□□ 1.74
UPF1-209ENST00000600310 HMOX1P09601 288 aa25.89■■□□□ 1.74
UPF1-209ENST00000600310 MARCH10Q8NA82 808 aaPredicted RBP25.89■■□□□ 1.74
UPF1-209ENST00000600310 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.89■■□□□ 1.74
UPF1-209ENST00000600310 U2AF1L5P0DN76 240 aaPredicted RBP25.87■■□□□ 1.73
UPF1-209ENST00000600310 U2AF1Q01081 240 aaKnown RBP eCLIP25.87■■□□□ 1.73
UPF1-209ENST00000600310 FAM182BQ5T319 152 aa25.87■■□□□ 1.73
UPF1-209ENST00000600310 FAM196AQ6ZSG2 479 aa25.86■■□□□ 1.73
UPF1-209ENST00000600310 SPG7Q9UQ90 795 aa25.86■■□□□ 1.73
UPF1-209ENST00000600310 DDX54Q8TDD1 881 aaKnown RBP25.85■■□□□ 1.73
UPF1-209ENST00000600310 PLEKHO1Q53GL0 409 aaPredicted RBP25.84■■□□□ 1.73
UPF1-209ENST00000600310 BCL9O00512 1426 aa25.83■■□□□ 1.73
UPF1-209ENST00000600310 AMOTQ4VCS5 1084 aa25.83■■□□□ 1.73
UPF1-209ENST00000600310 PCDH11XQ9BZA7 1347 aa25.83■■□□□ 1.73
UPF1-209ENST00000600310 PCDH11YQ9BZA8 1340 aa25.83■■□□□ 1.73
UPF1-209ENST00000600310 FCHSD2O94868 740 aa25.82■■□□□ 1.72
UPF1-209ENST00000600310 RSPH6AQ9H0K4 717 aa25.82■■□□□ 1.72
UPF1-209ENST00000600310 CYP27B1O15528 508 aa25.81■■□□□ 1.72
UPF1-209ENST00000600310 PKD1L3Q7Z443 1732 aa25.8■■□□□ 1.72
UPF1-209ENST00000600310 DIEXFQ68CQ4 756 aaKnown RBP25.8■■□□□ 1.72
UPF1-209ENST00000600310 CCDC184Q52MB2 194 aa25.79■■□□□ 1.72
UPF1-209ENST00000600310 PRKAR2BP31323 418 aa25.78■■□□□ 1.72
UPF1-209ENST00000600310 SHANK3Q9BYB0 1731 aa25.77■■□□□ 1.72
UPF1-209ENST00000600310 IFNL2Q8IZJ0 200 aa25.77■■□□□ 1.72
UPF1-209ENST00000600310 PHKG2P15735 406 aa25.76■■□□□ 1.71
UPF1-209ENST00000600310 WDR43Q15061 677 aaKnown RBP eCLIP25.75■■□□□ 1.71
UPF1-209ENST00000600310 NKX1-1Q15270 411 aaPredicted RBP25.75■■□□□ 1.71
UPF1-209ENST00000600310 ZNF530Q6P9A1 599 aaPredicted RBP25.75■■□□□ 1.71
UPF1-209ENST00000600310 MTHFSDQ2M296 383 aaKnown RBP25.74■■□□□ 1.71
UPF1-209ENST00000600310 CCDC125Q86Z20 511 aa25.74■■□□□ 1.71
UPF1-209ENST00000600310 MRS2Q9HD23 443 aa25.74■■□□□ 1.71
UPF1-209ENST00000600310 TRIM37O94972 964 aa25.73■■□□□ 1.71
UPF1-209ENST00000600310 PHACTR3Q96KR7 559 aa25.73■■□□□ 1.71
UPF1-209ENST00000600310 PNNQ9H307 717 aaKnown RBP25.73■■□□□ 1.71
UPF1-209ENST00000600310 PLEKHF1Q96S99 279 aa25.72■■□□□ 1.71
UPF1-209ENST00000600310 HSP90AB1P08238 724 aaKnown RBP25.71■■□□□ 1.71
UPF1-209ENST00000600310 C1orf141Q5JVX7 400 aa25.71■■□□□ 1.71
UPF1-209ENST00000600310 GAS2L2Q8NHY3 880 aa25.71■■□□□ 1.71
UPF1-209ENST00000600310 ADAMTS8Q9UP79 889 aa25.71■■□□□ 1.71
UPF1-209ENST00000600310 EP400Q96L91 3159 aa25.71■■□□□ 1.71
UPF1-209ENST00000600310 AKAP4Q5JQC9 854 aa25.7■■□□□ 1.7
UPF1-209ENST00000600310 ACSBG1Q96GR2 724 aa25.7■■□□□ 1.7
UPF1-209ENST00000600310 BCL11BQ9C0K0 894 aaPredicted RBP25.7■■□□□ 1.7
UPF1-209ENST00000600310 NEFMP07197 916 aa25.68■■□□□ 1.7
UPF1-209ENST00000600310 PNISRQ8TF01 805 aaKnown RBP25.68■■□□□ 1.7
UPF1-209ENST00000600310 KCNQ2O43526 872 aa25.67■■□□□ 1.7
UPF1-209ENST00000600310 SF3B2Q13435 895 aaKnown RBP25.67■■□□□ 1.7
UPF1-209ENST00000600310 DCAF5Q96JK2 942 aa25.67■■□□□ 1.7
UPF1-209ENST00000600310 PRIM1P49642 420 aaKnown RBP25.66■■□□□ 1.7
UPF1-209ENST00000600310 PTF1AQ7RTS3 328 aa25.66■■□□□ 1.7
UPF1-209ENST00000600310 CCER2I3L3R5 266 aa25.64■■□□□ 1.7
UPF1-209ENST00000600310 SBF2Q86WG5 1849 aa25.64■■□□□ 1.7
UPF1-209ENST00000600310 MAPK8IP3Q9UPT6 1336 aa25.63■■□□□ 1.69
UPF1-209ENST00000600310 MPRIPQ6WCQ1 1025 aa25.63■■□□□ 1.69
UPF1-209ENST00000600310 KDM6AO15550 1401 aaPredicted RBP25.63■■□□□ 1.69
UPF1-209ENST00000600310 GNAT3A8MTJ3 354 aa25.62■■□□□ 1.69
UPF1-209ENST00000600310 APBA3O96018 575 aa25.62■■□□□ 1.69
UPF1-209ENST00000600310 SYTL4Q96C24 671 aaPredicted RBP25.62■■□□□ 1.69
UPF1-209ENST00000600310 RUNDC1Q96C34 613 aa25.62■■□□□ 1.69
UPF1-209ENST00000600310 NHSQ6T4R5 1651 aa25.61■■□□□ 1.69
UPF1-209ENST00000600310 MAP3K5Q99683 1374 aa25.61■■□□□ 1.69
UPF1-209ENST00000600310 SRCAPQ6ZRS2 3230 aa25.61■■□□□ 1.69
UPF1-209ENST00000600310 ERVV-2B6SEH9 535 aa25.61■■□□□ 1.69
UPF1-209ENST00000600310 CCDC146Q8IYE0 955 aa25.61■■□□□ 1.69
UPF1-209ENST00000600310 BAG6P46379 1132 aa25.6■■□□□ 1.69
UPF1-209ENST00000600310 NFE2L2Q16236 605 aa25.6■■□□□ 1.69
UPF1-209ENST00000600310 MIER1Q8N108 512 aa25.6■■□□□ 1.69
UPF1-209ENST00000600310 DOT1LQ8TEK3 1739 aa25.6■■□□□ 1.69
UPF1-209ENST00000600310 RNMTO43148 476 aaKnown RBP25.59■■□□□ 1.69
UPF1-209ENST00000600310 TNS1Q9HBL0 1735 aaKnown RBP25.59■■□□□ 1.69
UPF1-209ENST00000600310 TOGARAM1Q9Y4F4 1720 aa25.58■■□□□ 1.69
UPF1-209ENST00000600310 DEFB132Q7Z7B7 95 aa25.58■■□□□ 1.69
UPF1-209ENST00000600310 LGR6Q9HBX8 967 aa25.58■■□□□ 1.69
UPF1-209ENST00000600310 PLSCR1O15162 318 aa25.57■■□□□ 1.68
UPF1-209ENST00000600310 HTATSF1O43719 755 aaKnown RBP25.57■■□□□ 1.68
UPF1-209ENST00000600310 IL17REQ8NFR9 667 aa25.57■■□□□ 1.68
UPF1-209ENST00000600310 PIGBQ92521 554 aa25.57■■□□□ 1.68
UPF1-209ENST00000600310 TMOD3Q9NYL9 352 aa25.57■■□□□ 1.68
UPF1-209ENST00000600310 CABP4P57796 275 aa25.56■■□□□ 1.68
UPF1-209ENST00000600310 TMPOP42166 694 aaKnown RBP25.55■■□□□ 1.68
UPF1-209ENST00000600310 EN1Q05925 392 aaPredicted RBP25.55■■□□□ 1.68
UPF1-209ENST00000600310 KAT6BQ8WYB5 2073 aa25.54■■□□□ 1.68
UPF1-209ENST00000600310 RTF1Q92541 710 aaKnown RBP25.54■■□□□ 1.68
UPF1-209ENST00000600310 ADAMTS7Q9UKP4 1686 aa25.53■■□□□ 1.68
UPF1-209ENST00000600310 CAMKK2Q96RR4 588 aa25.53■■□□□ 1.68
UPF1-209ENST00000600310 CEMIPQ8WUJ3 1361 aa25.53■■□□□ 1.68
UPF1-209ENST00000600310 FAM9BQ8IZU0 186 aa25.52■■□□□ 1.68
UPF1-209ENST00000600310 NFATC2IPQ8NCF5 419 aa25.52■■□□□ 1.68
UPF1-209ENST00000600310 SLC52A2Q9HAB3 445 aa25.52■■□□□ 1.68
UPF1-209ENST00000600310 RIPK4P57078 832 aa25.51■■□□□ 1.67
UPF1-209ENST00000600310 SCN11AQ9UI33 1791 aa25.51■■□□□ 1.67
UPF1-209ENST00000600310 BTAF1O14981 1849 aa25.51■■□□□ 1.67
UPF1-209ENST00000600310 APAF1O14727 1248 aa25.5■■□□□ 1.67
UPF1-209ENST00000600310 ITGB4P16144 1822 aa25.5■■□□□ 1.67
UPF1-209ENST00000600310 MRC1P22897 1456 aa25.5■■□□□ 1.67
UPF1-209ENST00000600310 EZH2Q15910 746 aaKnown RBP25.5■■□□□ 1.67
UPF1-209ENST00000600310 DCTN1Q14203 1278 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms