RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 IL13P35225 146 aa23.31■■□□□ 1.32
SHKBP1-212ENST00000596163 EN1Q05925 392 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-212ENST00000596163 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.31■■□□□ 1.32
SHKBP1-212ENST00000596163 PCDH11XQ9BZA7 1347 aa23.31■■□□□ 1.32
SHKBP1-212ENST00000596163 PCDH11YQ9BZA8 1340 aa23.31■■□□□ 1.32
SHKBP1-212ENST00000596163 DIAPH1O60610 1272 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-212ENST00000596163 CFAP53Q96M91 514 aa23.3■■□□□ 1.32
SHKBP1-212ENST00000596163 RGPD2P0DJD1 1756 aa23.29■■□□□ 1.32
SHKBP1-212ENST00000596163 PLEKHG2Q9H7P9 1386 aa23.28■■□□□ 1.32
SHKBP1-212ENST00000596163 PARD3Q8TEW0 1356 aa23.27■■□□□ 1.32
SHKBP1-212ENST00000596163 ACSBG1Q96GR2 724 aa23.27■■□□□ 1.32
SHKBP1-212ENST00000596163 CAMKK2Q96RR4 588 aa23.27■■□□□ 1.32
SHKBP1-212ENST00000596163 PLSCR1O15162 318 aa23.26■■□□□ 1.31
SHKBP1-212ENST00000596163 PPP2R1AP30153 589 aa23.26■■□□□ 1.31
SHKBP1-212ENST00000596163 EZH2Q15910 746 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-212ENST00000596163 PLEKHO1Q53GL0 409 aaPredicted RBP23.25■■□□□ 1.31
SHKBP1-212ENST00000596163 SULT6B1Q6IMI4 303 aa23.25■■□□□ 1.31
SHKBP1-212ENST00000596163 KCNQ2O43526 872 aa23.24■■□□□ 1.31
SHKBP1-212ENST00000596163 AMOTQ4VCS5 1084 aa23.24■■□□□ 1.31
SHKBP1-212ENST00000596163 RALBP1Q15311 655 aa23.23■■□□□ 1.31
SHKBP1-212ENST00000596163 ZNF316A6NFI3 1004 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-212ENST00000596163 CYP27B1O15528 508 aa23.22■■□□□ 1.31
SHKBP1-212ENST00000596163 IFNL2Q8IZJ0 200 aa23.22■■□□□ 1.31
SHKBP1-212ENST00000596163 NUDCQ9Y266 331 aa23.22■■□□□ 1.31
SHKBP1-212ENST00000596163 PTF1AQ7RTS3 328 aa23.21■■□□□ 1.31
SHKBP1-212ENST00000596163 SYTL4Q96C24 671 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-212ENST00000596163 TNS1Q9HBL0 1735 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-212ENST00000596163 U2SURPO15042 1029 aaKnown RBP23.2■■□□□ 1.3
SHKBP1-212ENST00000596163 PRIM1P49642 420 aaKnown RBP23.2■■□□□ 1.3
SHKBP1-212ENST00000596163 AEBP1Q8IUX7 1158 aa23.2■■□□□ 1.3
SHKBP1-212ENST00000596163 KDRP35968 1356 aa23.19■■□□□ 1.3
SHKBP1-212ENST00000596163 NKX1-1Q15270 411 aaPredicted RBP23.19■■□□□ 1.3
SHKBP1-212ENST00000596163 HSP90AB1P08238 724 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-212ENST00000596163 NBPF14Q5TI25 921 aa23.18■■□□□ 1.3
SHKBP1-212ENST00000596163 PHKG2P15735 406 aa23.17■■□□□ 1.3
SHKBP1-212ENST00000596163 SBF2Q86WG5 1849 aa23.17■■□□□ 1.3
SHKBP1-212ENST00000596163 HMOX1P09601 288 aa23.16■■□□□ 1.3
SHKBP1-212ENST00000596163 C1orf141Q5JVX7 400 aa23.15■■□□□ 1.3
SHKBP1-212ENST00000596163 ZNF530Q6P9A1 599 aaPredicted RBP23.15■■□□□ 1.3
SHKBP1-212ENST00000596163 NHSQ6T4R5 1651 aa23.14■■□□□ 1.29
SHKBP1-212ENST00000596163 COL3A1P02461 1466 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-212ENST00000596163 PKD1L3Q7Z443 1732 aa23.13■■□□□ 1.29
SHKBP1-212ENST00000596163 TXNRD1Q16881 649 aa23.13■■□□□ 1.29
SHKBP1-212ENST00000596163 DCAF5Q96JK2 942 aa23.12■■□□□ 1.29
SHKBP1-212ENST00000596163 SHANK3Q9BYB0 1731 aa23.11■■□□□ 1.29
SHKBP1-212ENST00000596163 MPRIPQ6WCQ1 1025 aa23.11■■□□□ 1.29
SHKBP1-212ENST00000596163 U2AF1L5P0DN76 240 aaPredicted RBP23.1■■□□□ 1.29
SHKBP1-212ENST00000596163 HMGB2P26583 209 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-212ENST00000596163 U2AF1Q01081 240 aaKnown RBP eCLIP23.1■■□□□ 1.29
SHKBP1-212ENST00000596163 PROM2Q8N271 834 aa23.1■■□□□ 1.29
SHKBP1-212ENST00000596163 ERVV-2B6SEH9 535 aa23.09■■□□□ 1.29
SHKBP1-212ENST00000596163 SLC27A3Q5K4L6 730 aa23.09■■□□□ 1.29
SHKBP1-212ENST00000596163 TMOD3Q9NYL9 352 aa23.09■■□□□ 1.29
SHKBP1-212ENST00000596163 MYBBP1AQ9BQG0 1328 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-212ENST00000596163 AKAP4Q5JQC9 854 aa23.08■■□□□ 1.29
SHKBP1-212ENST00000596163 SMARCC1Q92922 1105 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-212ENST00000596163 KAT6BQ8WYB5 2073 aa23.07■■□□□ 1.28
SHKBP1-212ENST00000596163 RGPD3A6NKT7 1758 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-212ENST00000596163 RGPD4Q7Z3J3 1758 aa23.07■■□□□ 1.28
SHKBP1-212ENST00000596163 FCHSD2O94868 740 aa23.07■■□□□ 1.28
SHKBP1-212ENST00000596163 R3HDM1Q15032 1099 aaKnown RBP23.06■■□□□ 1.28
SHKBP1-212ENST00000596163 MTHFSDQ2M296 383 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-212ENST00000596163 GAS2L2Q8NHY3 880 aa23.05■■□□□ 1.28
SHKBP1-212ENST00000596163 PIGBQ92521 554 aa23.05■■□□□ 1.28
SHKBP1-212ENST00000596163 PRKRIP1Q9H875 184 aaPredicted RBP23.05■■□□□ 1.28
SHKBP1-212ENST00000596163 DOT1LQ8TEK3 1739 aa23.05■■□□□ 1.28
SHKBP1-212ENST00000596163 PSDA5PKW4 1024 aaPredicted RBP23.04■■□□□ 1.28
SHKBP1-212ENST00000596163 NEFMP07197 916 aa23.04■■□□□ 1.28
SHKBP1-212ENST00000596163 CABP4P57796 275 aa23.04■■□□□ 1.28
SHKBP1-212ENST00000596163 PNNQ9H307 717 aaKnown RBP23.04■■□□□ 1.28
SHKBP1-212ENST00000596163 STK32BQ9NY57 414 aa23.04■■□□□ 1.28
SHKBP1-212ENST00000596163 BTAF1O14981 1849 aa23.03■■□□□ 1.28
SHKBP1-212ENST00000596163 PRKAR2BP31323 418 aa23.03■■□□□ 1.28
SHKBP1-212ENST00000596163 RSPH6AQ9H0K4 717 aa23.03■■□□□ 1.28
SHKBP1-212ENST00000596163 RREB1Q92766 1687 aa23.03■■□□□ 1.28
SHKBP1-212ENST00000596163 CCNL1Q9UK58 526 aaPredicted RBP23.01■■□□□ 1.27
SHKBP1-212ENST00000596163 PALLDQ8WX93 1383 aa23■■□□□ 1.27
SHKBP1-212ENST00000596163 SLC15A2Q16348 729 aa22.99■■□□□ 1.27
SHKBP1-212ENST00000596163 LRRC4BQ9NT99 713 aa22.99■■□□□ 1.27
SHKBP1-212ENST00000596163 GNAT3A8MTJ3 354 aa22.98■■□□□ 1.27
SHKBP1-212ENST00000596163 NUP188Q5SRE5 1749 aa22.98■■□□□ 1.27
SHKBP1-212ENST00000596163 KDM6AO15550 1401 aaPredicted RBP22.98■■□□□ 1.27
SHKBP1-212ENST00000596163 RNMTO43148 476 aaKnown RBP22.97■■□□□ 1.27
SHKBP1-212ENST00000596163 NFATC2IPQ8NCF5 419 aa22.97■■□□□ 1.27
SHKBP1-212ENST00000596163 PHACTR3Q96KR7 559 aa22.97■■□□□ 1.27
SHKBP1-212ENST00000596163 ANO8Q9HCE9 1232 aaPredicted RBP22.97■■□□□ 1.27
SHKBP1-212ENST00000596163 ASAP1Q9ULH1 1129 aa22.96■■□□□ 1.27
SHKBP1-212ENST00000596163 LGR6Q9HBX8 967 aa22.95■■□□□ 1.26
SHKBP1-212ENST00000596163 ATG3Q9NT62 314 aa22.95■■□□□ 1.26
SHKBP1-212ENST00000596163 TOGARAM1Q9Y4F4 1720 aa22.94■■□□□ 1.26
SHKBP1-212ENST00000596163 MAP3K5Q99683 1374 aa22.94■■□□□ 1.26
SHKBP1-212ENST00000596163 ANP32CO43423 234 aa22.94■■□□□ 1.26
SHKBP1-212ENST00000596163 SLC52A2Q9HAB3 445 aa22.94■■□□□ 1.26
SHKBP1-212ENST00000596163 LOC102724428A0A0B4J2F2 783 aa22.93■■□□□ 1.26
SHKBP1-212ENST00000596163 SIK1P57059 783 aa22.93■■□□□ 1.26
SHKBP1-212ENST00000596163 WDR43Q15061 677 aaKnown RBP eCLIP22.93■■□□□ 1.26
SHKBP1-212ENST00000596163 SRCAPQ6ZRS2 3230 aa22.92■■□□□ 1.26
SHKBP1-212ENST00000596163 KCNQ4P56696 695 aa22.92■■□□□ 1.26
SHKBP1-212ENST00000596163 RTF1Q92541 710 aaKnown RBP22.92■■□□□ 1.26
SHKBP1-212ENST00000596163 MAPK8IP3Q9UPT6 1336 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms