RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 DIAPH1O60610 1272 aaKnown RBP26.37■■□□□ 1.81
LSM4-203ENST00000593829 CCDC125Q86Z20 511 aa26.36■■□□□ 1.81
LSM4-203ENST00000593829 CFAP53Q96M91 514 aa26.36■■□□□ 1.81
LSM4-203ENST00000593829 ZCRB1Q8TBF4 217 aaKnown RBP26.35■■□□□ 1.81
LSM4-203ENST00000593829 COL3A1P02461 1466 aaPredicted RBP26.32■■□□□ 1.8
LSM4-203ENST00000593829 DDX54Q8TDD1 881 aaKnown RBP26.32■■□□□ 1.8
LSM4-203ENST00000593829 RGPD1P0DJD0 1748 aa26.3■■□□□ 1.8
LSM4-203ENST00000593829 SULT6B1Q6IMI4 303 aa26.3■■□□□ 1.8
LSM4-203ENST00000593829 BCL9O00512 1426 aa26.3■■□□□ 1.8
LSM4-203ENST00000593829 SF3B2Q13435 895 aaKnown RBP26.29■■□□□ 1.8
LSM4-203ENST00000593829 AEBP1Q8IUX7 1158 aa26.29■■□□□ 1.8
LSM4-203ENST00000593829 TRIM37O94972 964 aa26.28■■□□□ 1.8
LSM4-203ENST00000593829 SPG7Q9UQ90 795 aa26.27■■□□□ 1.8
LSM4-203ENST00000593829 KDRP35968 1356 aa26.27■■□□□ 1.8
LSM4-203ENST00000593829 PLEKHG2Q9H7P9 1386 aa26.27■■□□□ 1.8
LSM4-203ENST00000593829 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.27■■□□□ 1.8
LSM4-203ENST00000593829 PCDH11XQ9BZA7 1347 aa26.26■■□□□ 1.8
LSM4-203ENST00000593829 PCDH11YQ9BZA8 1340 aa26.26■■□□□ 1.8
LSM4-203ENST00000593829 PRKRIP1Q9H875 184 aaPredicted RBP26.26■■□□□ 1.79
LSM4-203ENST00000593829 U2SURPO15042 1029 aaKnown RBP26.26■■□□□ 1.79
LSM4-203ENST00000593829 NUDCQ9Y266 331 aa26.26■■□□□ 1.79
LSM4-203ENST00000593829 MYBBP1AQ9BQG0 1328 aaKnown RBP26.25■■□□□ 1.79
LSM4-203ENST00000593829 SHANK3Q9BYB0 1731 aa26.25■■□□□ 1.79
LSM4-203ENST00000593829 PKD1L3Q7Z443 1732 aa26.24■■□□□ 1.79
LSM4-203ENST00000593829 HMOX1P09601 288 aa26.24■■□□□ 1.79
LSM4-203ENST00000593829 CYP27B1O15528 508 aa26.22■■□□□ 1.79
LSM4-203ENST00000593829 PLEKHO1Q53GL0 409 aaPredicted RBP26.22■■□□□ 1.79
LSM4-203ENST00000593829 BCL11BQ9C0K0 894 aaPredicted RBP26.21■■□□□ 1.79
LSM4-203ENST00000593829 SBF2Q86WG5 1849 aa26.2■■□□□ 1.79
LSM4-203ENST00000593829 BAG6P46379 1132 aa26.2■■□□□ 1.79
LSM4-203ENST00000593829 AMOTQ4VCS5 1084 aa26.2■■□□□ 1.79
LSM4-203ENST00000593829 ACSBG1Q96GR2 724 aa26.2■■□□□ 1.78
LSM4-203ENST00000593829 TNS1Q9HBL0 1735 aaKnown RBP26.19■■□□□ 1.78
LSM4-203ENST00000593829 APBA3O96018 575 aa26.18■■□□□ 1.78
LSM4-203ENST00000593829 DEFB132Q7Z7B7 95 aa26.18■■□□□ 1.78
LSM4-203ENST00000593829 IFNL2Q8IZJ0 200 aa26.18■■□□□ 1.78
LSM4-203ENST00000593829 U2AF1L5P0DN76 240 aaPredicted RBP26.17■■□□□ 1.78
LSM4-203ENST00000593829 U2AF1Q01081 240 aaKnown RBP eCLIP26.17■■□□□ 1.78
LSM4-203ENST00000593829 KCNQ2O43526 872 aa26.16■■□□□ 1.78
LSM4-203ENST00000593829 PTF1AQ7RTS3 328 aa26.16■■□□□ 1.78
LSM4-203ENST00000593829 PHKG2P15735 406 aa26.16■■□□□ 1.78
LSM4-203ENST00000593829 NKX1-1Q15270 411 aaPredicted RBP26.15■■□□□ 1.78
LSM4-203ENST00000593829 ZNF530Q6P9A1 599 aaPredicted RBP26.14■■□□□ 1.78
LSM4-203ENST00000593829 NHSQ6T4R5 1651 aa26.14■■□□□ 1.78
LSM4-203ENST00000593829 EN1Q05925 392 aaPredicted RBP26.13■■□□□ 1.77
LSM4-203ENST00000593829 ANP32CO43423 234 aa26.12■■□□□ 1.77
LSM4-203ENST00000593829 PRIM1P49642 420 aaKnown RBP26.12■■□□□ 1.77
LSM4-203ENST00000593829 SYTL4Q96C24 671 aaPredicted RBP26.12■■□□□ 1.77
LSM4-203ENST00000593829 RSPH6AQ9H0K4 717 aa26.12■■□□□ 1.77
LSM4-203ENST00000593829 FCHSD2O94868 740 aa26.11■■□□□ 1.77
LSM4-203ENST00000593829 C1orf141Q5JVX7 400 aa26.11■■□□□ 1.77
LSM4-203ENST00000593829 DOT1LQ8TEK3 1739 aa26.11■■□□□ 1.77
LSM4-203ENST00000593829 HSP90AB1P08238 724 aaKnown RBP26.1■■□□□ 1.77
LSM4-203ENST00000593829 PRKAR2BP31323 418 aa26.1■■□□□ 1.77
LSM4-203ENST00000593829 KAT6BQ8WYB5 2073 aa26.09■■□□□ 1.77
LSM4-203ENST00000593829 CAMKK2Q96RR4 588 aa26.09■■□□□ 1.77
LSM4-203ENST00000593829 PLSCR1O15162 318 aa26.08■■□□□ 1.77
LSM4-203ENST00000593829 MTHFSDQ2M296 383 aaKnown RBP26.08■■□□□ 1.76
LSM4-203ENST00000593829 EZH2Q15910 746 aaKnown RBP26.07■■□□□ 1.76
LSM4-203ENST00000593829 DCAF5Q96JK2 942 aa26.07■■□□□ 1.76
LSM4-203ENST00000593829 SUPT16HQ9Y5B9 1047 aaKnown RBP26.06■■□□□ 1.76
LSM4-203ENST00000593829 AKAP4Q5JQC9 854 aa26.06■■□□□ 1.76
LSM4-203ENST00000593829 PHACTR3Q96KR7 559 aa26.04■■□□□ 1.76
LSM4-203ENST00000593829 BTAF1O14981 1849 aa26.04■■□□□ 1.76
LSM4-203ENST00000593829 TOGARAM1Q9Y4F4 1720 aa26.04■■□□□ 1.76
LSM4-203ENST00000593829 MPRIPQ6WCQ1 1025 aa26.04■■□□□ 1.76
LSM4-203ENST00000593829 GAS2L2Q8NHY3 880 aa26.04■■□□□ 1.76
LSM4-203ENST00000593829 PNNQ9H307 717 aaKnown RBP26.02■■□□□ 1.76
LSM4-203ENST00000593829 RGPD3A6NKT7 1758 aaPredicted RBP26.01■■□□□ 1.76
LSM4-203ENST00000593829 RGPD4Q7Z3J3 1758 aa26.01■■□□□ 1.76
LSM4-203ENST00000593829 ERVV-2B6SEH9 535 aa26.01■■□□□ 1.75
LSM4-203ENST00000593829 KDM6AO15550 1401 aaPredicted RBP26.01■■□□□ 1.75
LSM4-203ENST00000593829 NEFMP07197 916 aa26■■□□□ 1.75
LSM4-203ENST00000593829 WDR43Q15061 677 aaKnown RBP eCLIP26■■□□□ 1.75
LSM4-203ENST00000593829 TMOD3Q9NYL9 352 aa26■■□□□ 1.75
LSM4-203ENST00000593829 PIGBQ92521 554 aa25.99■■□□□ 1.75
LSM4-203ENST00000593829 ITGB4P16144 1822 aa25.98■■□□□ 1.75
LSM4-203ENST00000593829 PROM2Q8N271 834 aa25.98■■□□□ 1.75
LSM4-203ENST00000593829 PLEKHF1Q96S99 279 aa25.98■■□□□ 1.75
LSM4-203ENST00000593829 TXNRD1Q16881 649 aa25.97■■□□□ 1.75
LSM4-203ENST00000593829 GNAT3A8MTJ3 354 aa25.96■■□□□ 1.75
LSM4-203ENST00000593829 CABP4P57796 275 aa25.96■■□□□ 1.75
LSM4-203ENST00000593829 MAP3K5Q99683 1374 aa25.96■■□□□ 1.75
LSM4-203ENST00000593829 RREB1Q92766 1687 aa25.96■■□□□ 1.75
LSM4-203ENST00000593829 LGR6Q9HBX8 967 aa25.96■■□□□ 1.75
LSM4-203ENST00000593829 RNMTO43148 476 aaKnown RBP25.95■■□□□ 1.74
LSM4-203ENST00000593829 MAPK8IP3Q9UPT6 1336 aa25.95■■□□□ 1.74
LSM4-203ENST00000593829 CCDC184Q52MB2 194 aa25.94■■□□□ 1.74
LSM4-203ENST00000593829 SMARCC1Q92922 1105 aaPredicted RBP25.94■■□□□ 1.74
LSM4-203ENST00000593829 ADAMTS8Q9UP79 889 aa25.94■■□□□ 1.74
LSM4-203ENST00000593829 SCN11AQ9UI33 1791 aa25.93■■□□□ 1.74
LSM4-203ENST00000593829 NFATC2IPQ8NCF5 419 aa25.92■■□□□ 1.74
LSM4-203ENST00000593829 PALLDQ8WX93 1383 aa25.91■■□□□ 1.74
LSM4-203ENST00000593829 MRS2Q9HD23 443 aa25.91■■□□□ 1.74
LSM4-203ENST00000593829 NUP188Q5SRE5 1749 aa25.91■■□□□ 1.74
LSM4-203ENST00000593829 SLC27A3Q5K4L6 730 aa25.9■■□□□ 1.74
LSM4-203ENST00000593829 SLC52A2Q9HAB3 445 aa25.9■■□□□ 1.74
LSM4-203ENST00000593829 ADAMTS7Q9UKP4 1686 aa25.9■■□□□ 1.74
LSM4-203ENST00000593829 NBPF14Q5TI25 921 aa25.9■■□□□ 1.74
LSM4-203ENST00000593829 ASAP1Q9ULH1 1129 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms