RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 RAPGEF4Q8WZA2 1011 aa25.3■■□□□ 1.64
SHKBP1-202ENST00000593764 RREB1Q92766 1687 aa25.29■■□□□ 1.64
SHKBP1-202ENST00000593764 NCAPD2Q15021 1401 aa25.29■■□□□ 1.64
SHKBP1-202ENST00000593764 PROM2Q8N271 834 aa25.29■■□□□ 1.64
SHKBP1-202ENST00000593764 EYA1Q99502 592 aa25.29■■□□□ 1.64
SHKBP1-202ENST00000593764 TATP17735 454 aaPredicted RBP25.28■■□□□ 1.64
SHKBP1-202ENST00000593764 EIF4A2Q14240 407 aaKnown RBP25.28■■□□□ 1.64
SHKBP1-202ENST00000593764 SHANK3Q9BYB0 1731 aa25.27■■□□□ 1.64
SHKBP1-202ENST00000593764 R3HDM1Q15032 1099 aaKnown RBP25.27■■□□□ 1.64
SHKBP1-202ENST00000593764 NHSQ6T4R5 1651 aa25.26■■□□□ 1.63
SHKBP1-202ENST00000593764 KAT6BQ8WYB5 2073 aa25.26■■□□□ 1.63
SHKBP1-202ENST00000593764 NUP188Q5SRE5 1749 aa25.26■■□□□ 1.63
SHKBP1-202ENST00000593764 RGPD3A6NKT7 1758 aaPredicted RBP25.26■■□□□ 1.63
SHKBP1-202ENST00000593764 RGPD4Q7Z3J3 1758 aa25.26■■□□□ 1.63
SHKBP1-202ENST00000593764 TXNRD1Q16881 649 aa25.21■■□□□ 1.63
SHKBP1-202ENST00000593764 CYP27B1O15528 508 aa25.2■■□□□ 1.62
SHKBP1-202ENST00000593764 PRIM1P49642 420 aaKnown RBP25.2■■□□□ 1.62
SHKBP1-202ENST00000593764 CC2D1BQ5T0F9 858 aaKnown RBP25.2■■□□□ 1.62
SHKBP1-202ENST00000593764 NBPF14Q5TI25 921 aa25.2■■□□□ 1.62
SHKBP1-202ENST00000593764 NPC1L1Q9UHC9 1359 aa25.19■■□□□ 1.62
SHKBP1-202ENST00000593764 PCDH11XQ9BZA7 1347 aa25.19■■□□□ 1.62
SHKBP1-202ENST00000593764 PCDH11YQ9BZA8 1340 aa25.19■■□□□ 1.62
SHKBP1-202ENST00000593764 BTAF1O14981 1849 aa25.19■■□□□ 1.62
SHKBP1-202ENST00000593764 IGSF1Q8N6C5 1336 aa25.18■■□□□ 1.62
SHKBP1-202ENST00000593764 ANO8Q9HCE9 1232 aaPredicted RBP25.17■■□□□ 1.62
SHKBP1-202ENST00000593764 SYTL4Q96C24 671 aaPredicted RBP25.16■■□□□ 1.62
SHKBP1-202ENST00000593764 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.16■■□□□ 1.62
SHKBP1-202ENST00000593764 PKD1L3Q7Z443 1732 aa25.15■■□□□ 1.62
SHKBP1-202ENST00000593764 MTHFSP49914 203 aa25.15■■□□□ 1.62
SHKBP1-202ENST00000593764 IL13P35225 146 aa25.14■■□□□ 1.62
SHKBP1-202ENST00000593764 SPG7Q9UQ90 795 aa25.14■■□□□ 1.62
SHKBP1-202ENST00000593764 DOT1LQ8TEK3 1739 aa25.14■■□□□ 1.61
SHKBP1-202ENST00000593764 NKX1-1Q15270 411 aaPredicted RBP25.12■■□□□ 1.61
SHKBP1-202ENST00000593764 CNGB1Q14028 1251 aaPredicted RBP25.11■■□□□ 1.61
SHKBP1-202ENST00000593764 LRRC4BQ9NT99 713 aa25.11■■□□□ 1.61
SHKBP1-202ENST00000593764 AEBP1Q8IUX7 1158 aa25.1■■□□□ 1.61
SHKBP1-202ENST00000593764 PLEKHG2Q9H7P9 1386 aa25.09■■□□□ 1.61
SHKBP1-202ENST00000593764 LRP5O75197 1615 aa25.08■■□□□ 1.6
SHKBP1-202ENST00000593764 PHKG2P15735 406 aa25.07■■□□□ 1.6
SHKBP1-202ENST00000593764 SLC15A2Q16348 729 aa25.07■■□□□ 1.6
SHKBP1-202ENST00000593764 SLC27A3Q5K4L6 730 aa25.06■■□□□ 1.6
SHKBP1-202ENST00000593764 SULT6B1Q6IMI4 303 aa25.06■■□□□ 1.6
SHKBP1-202ENST00000593764 IFNL2Q8IZJ0 200 aa25.06■■□□□ 1.6
SHKBP1-202ENST00000593764 KDRP35968 1356 aa25.05■■□□□ 1.6
SHKBP1-202ENST00000593764 PDGFDQ9GZP0 370 aaPredicted RBP25.05■■□□□ 1.6
SHKBP1-202ENST00000593764 STK32BQ9NY57 414 aa25.05■■□□□ 1.6
SHKBP1-202ENST00000593764 TOGARAM1Q9Y4F4 1720 aa25.04■■□□□ 1.6
SHKBP1-202ENST00000593764 KCNQ4P56696 695 aa25.04■■□□□ 1.6
SHKBP1-202ENST00000593764 MPRIPQ6WCQ1 1025 aa25.04■■□□□ 1.6
SHKBP1-202ENST00000593764 PAPPAQ13219 1627 aa25.04■■□□□ 1.6
SHKBP1-202ENST00000593764 PLEKHO1Q53GL0 409 aaPredicted RBP25.03■■□□□ 1.6
SHKBP1-202ENST00000593764 PIGBQ92521 554 aa25.02■■□□□ 1.6
SHKBP1-202ENST00000593764 LY75O60449 1722 aa25.01■■□□□ 1.59
SHKBP1-202ENST00000593764 DIAPH1O60610 1272 aaKnown RBP25.01■■□□□ 1.59
SHKBP1-202ENST00000593764 ZNF827Q17R98 1081 aa25.01■■□□□ 1.59
SHKBP1-202ENST00000593764 AMOTQ4VCS5 1084 aa25.01■■□□□ 1.59
SHKBP1-202ENST00000593764 ITGB4P16144 1822 aa25■■□□□ 1.59
SHKBP1-202ENST00000593764 AKT1S1Q96B36 256 aa25■■□□□ 1.59
SHKBP1-202ENST00000593764 COL3A1P02461 1466 aaPredicted RBP24.99■■□□□ 1.59
SHKBP1-202ENST00000593764 CASZ1Q86V15 1759 aa24.98■■□□□ 1.59
SHKBP1-202ENST00000593764 ZNF530Q6P9A1 599 aaPredicted RBP24.98■■□□□ 1.59
SHKBP1-202ENST00000593764 CCNL1Q9UK58 526 aaPredicted RBP24.98■■□□□ 1.59
SHKBP1-202ENST00000593764 HMOX1P09601 288 aa24.97■■□□□ 1.59
SHKBP1-202ENST00000593764 PALLDQ8WX93 1383 aa24.96■■□□□ 1.59
SHKBP1-202ENST00000593764 SPON1Q9HCB6 807 aa24.96■■□□□ 1.59
SHKBP1-202ENST00000593764 DCAF5Q96JK2 942 aa24.95■■□□□ 1.58
SHKBP1-202ENST00000593764 TMOD3Q9NYL9 352 aa24.95■■□□□ 1.58
SHKBP1-202ENST00000593764 HSP90AB1P08238 724 aaKnown RBP24.94■■□□□ 1.58
SHKBP1-202ENST00000593764 PPP2R1AP30153 589 aa24.94■■□□□ 1.58
SHKBP1-202ENST00000593764 SMARCC1Q92922 1105 aaPredicted RBP24.94■■□□□ 1.58
SHKBP1-202ENST00000593764 ERVV-2B6SEH9 535 aa24.93■■□□□ 1.58
SHKBP1-202ENST00000593764 ASAP1Q9ULH1 1129 aa24.93■■□□□ 1.58
SHKBP1-202ENST00000593764 KDM6AO15550 1401 aaPredicted RBP24.93■■□□□ 1.58
SHKBP1-202ENST00000593764 ZBTB7AO95365 584 aa24.92■■□□□ 1.58
SHKBP1-202ENST00000593764 C1orf141Q5JVX7 400 aa24.91■■□□□ 1.58
SHKBP1-202ENST00000593764 ATG3Q9NT62 314 aa24.9■■□□□ 1.58
SHKBP1-202ENST00000593764 U2SURPO15042 1029 aaKnown RBP24.89■■□□□ 1.58
SHKBP1-202ENST00000593764 TFCP2L1Q9NZI6 479 aa24.89■■□□□ 1.58
SHKBP1-202ENST00000593764 ATF5Q9Y2D1 282 aaPredicted RBP24.89■■□□□ 1.58
SHKBP1-202ENST00000593764 PNPLA7Q6ZV29 1317 aa24.88■■□□□ 1.57
SHKBP1-202ENST00000593764 PTGER2P43116 358 aa24.88■■□□□ 1.57
SHKBP1-202ENST00000593764 LOC102724428A0A0B4J2F2 783 aa24.87■■□□□ 1.57
SHKBP1-202ENST00000593764 SIK1P57059 783 aa24.87■■□□□ 1.57
SHKBP1-202ENST00000593764 MTHFSDQ2M296 383 aaKnown RBP24.87■■□□□ 1.57
SHKBP1-202ENST00000593764 AKAP4Q5JQC9 854 aa24.87■■□□□ 1.57
SHKBP1-202ENST00000593764 CFAP53Q96M91 514 aa24.87■■□□□ 1.57
SHKBP1-202ENST00000593764 MTFR1LQ9H019 292 aa24.87■■□□□ 1.57
SHKBP1-202ENST00000593764 CABP4P57796 275 aa24.85■■□□□ 1.57
SHKBP1-202ENST00000593764 DDX10Q13206 875 aaKnown RBP24.85■■□□□ 1.57
SHKBP1-202ENST00000593764 SGIP1Q9BQI5 828 aa24.85■■□□□ 1.57
SHKBP1-202ENST00000593764 TAF1LQ8IZX4 1826 aa24.84■■□□□ 1.57
SHKBP1-202ENST00000593764 TUBGCP6Q96RT7 1819 aa24.84■■□□□ 1.57
SHKBP1-202ENST00000593764 QSER1Q2KHR3 1735 aa24.84■■□□□ 1.57
SHKBP1-202ENST00000593764 NFATC2IPQ8NCF5 419 aa24.84■■□□□ 1.57
SHKBP1-202ENST00000593764 C5P01031 1676 aa24.83■■□□□ 1.57
SHKBP1-202ENST00000593764 LGR6Q9HBX8 967 aa24.83■■□□□ 1.57
SHKBP1-202ENST00000593764 HMGB2P26583 209 aaKnown RBP24.82■■□□□ 1.56
SHKBP1-202ENST00000593764 ITPK1Q13572 414 aa24.82■■□□□ 1.56
SHKBP1-202ENST00000593764 SLC16A10Q8TF71 515 aa24.82■■□□□ 1.56
SHKBP1-202ENST00000593764 SLC4A9Q96Q91 983 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms