RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 PRIM1P49642 420 aaKnown RBP33.37■■■□□ 2.93
LSM4-202ENST00000593564 SHANK3Q9BYB0 1731 aa33.36■■■□□ 2.93
LSM4-202ENST00000593564 CGNL1Q0VF96 1302 aa33.36■■■□□ 2.93
LSM4-202ENST00000593564 SYTL4Q96C24 671 aaPredicted RBP33.36■■■□□ 2.93
LSM4-202ENST00000593564 TIMELESSQ9UNS1 1208 aa33.36■■■□□ 2.93
LSM4-202ENST00000593564 AKT1S1Q96B36 256 aa33.35■■■□□ 2.93
LSM4-202ENST00000593564 NSD2O96028 1365 aa33.34■■■□□ 2.93
LSM4-202ENST00000593564 KIF24Q5T7B8 1368 aa33.34■■■□□ 2.93
LSM4-202ENST00000593564 FHDC1Q9C0D6 1143 aaPredicted RBP33.34■■■□□ 2.93
LSM4-202ENST00000593564 INSRP06213 1382 aa33.34■■■□□ 2.93
LSM4-202ENST00000593564 DOT1LQ8TEK3 1739 aa33.33■■■□□ 2.93
LSM4-202ENST00000593564 KIF20BQ96Q89 1820 aa33.33■■■□□ 2.93
LSM4-202ENST00000593564 FLT4P35916 1363 aa33.33■■■□□ 2.93
LSM4-202ENST00000593564 USHBP1Q8N6Y0 703 aa33.32■■■□□ 2.92
LSM4-202ENST00000593564 SYT17Q9BSW7 474 aa33.32■■■□□ 2.92
LSM4-202ENST00000593564 HSP90AB2PQ58FF8 381 aa33.31■■■□□ 2.92
LSM4-202ENST00000593564 RAPGEF4Q8WZA2 1011 aa33.31■■■□□ 2.92
LSM4-202ENST00000593564 CARD14Q9BXL6 1004 aa33.31■■■□□ 2.92
LSM4-202ENST00000593564 ARXQ96QS3 562 aa33.29■■■□□ 2.92
LSM4-202ENST00000593564 NSD3Q9BZ95 1437 aa33.28■■■□□ 2.92
LSM4-202ENST00000593564 SLC16A10Q8TF71 515 aa33.27■■■□□ 2.92
LSM4-202ENST00000593564 CLSPNQ9HAW4 1339 aa33.27■■■□□ 2.92
LSM4-202ENST00000593564 QSER1Q2KHR3 1735 aa33.26■■■□□ 2.92
LSM4-202ENST00000593564 TATP17735 454 aaPredicted RBP33.26■■■□□ 2.91
LSM4-202ENST00000593564 LY75O60449 1722 aa33.25■■■□□ 2.91
LSM4-202ENST00000593564 MAP3K5Q99683 1374 aa33.25■■■□□ 2.91
LSM4-202ENST00000593564 PNPLA7Q6ZV29 1317 aa33.25■■■□□ 2.91
LSM4-202ENST00000593564 KCNQ4P56696 695 aa33.24■■■□□ 2.91
LSM4-202ENST00000593564 TFCP2L1Q9NZI6 479 aa33.23■■■□□ 2.91
LSM4-202ENST00000593564 CCNL1Q9UK58 526 aaPredicted RBP33.22■■■□□ 2.91
LSM4-202ENST00000593564 PCDH11XQ9BZA7 1347 aa33.22■■■□□ 2.91
LSM4-202ENST00000593564 PCDH11YQ9BZA8 1340 aa33.22■■■□□ 2.91
LSM4-202ENST00000593564 EMILIN1Q9Y6C2 1016 aa33.21■■■□□ 2.91
LSM4-202ENST00000593564 UTRNP46939 3433 aa33.21■■■□□ 2.91
LSM4-202ENST00000593564 TUBGCP6Q96RT7 1819 aa33.16■■■□□ 2.9
LSM4-202ENST00000593564 POLD1P28340 1107 aa33.16■■■□□ 2.9
LSM4-202ENST00000593564 NCAPD2Q15021 1401 aa33.16■■■□□ 2.9
LSM4-202ENST00000593564 COL24A1Q17RW2 1714 aa33.15■■■□□ 2.9
LSM4-202ENST00000593564 CYP27B1O15528 508 aa33.14■■■□□ 2.9
LSM4-202ENST00000593564 PCGF6Q9BYE7 350 aa33.14■■■□□ 2.9
LSM4-202ENST00000593564 ANKRD26Q9UPS8 1709 aa33.13■■■□□ 2.89
LSM4-202ENST00000593564 PPM1GO15355 546 aaPredicted RBP33.12■■■□□ 2.89
LSM4-202ENST00000593564 WASHC2AQ641Q2 1341 aa33.11■■■□□ 2.89
LSM4-202ENST00000593564 PKD1L3Q7Z443 1732 aa33.09■■■□□ 2.89
LSM4-202ENST00000593564 HMGB2P26583 209 aaKnown RBP33.08■■■□□ 2.89
LSM4-202ENST00000593564 PALLDQ8WX93 1383 aa33.08■■■□□ 2.89
LSM4-202ENST00000593564 MPRIPQ6WCQ1 1025 aa33.07■■■□□ 2.88
LSM4-202ENST00000593564 COL23A1Q86Y22 540 aaPredicted RBP33.06■■■□□ 2.88
LSM4-202ENST00000593564 NKX1-1Q15270 411 aaPredicted RBP33.05■■■□□ 2.88
LSM4-202ENST00000593564 POLKQ9UBT6 870 aa33.05■■■□□ 2.88
LSM4-202ENST00000593564 KLHL34Q8N239 644 aa33.04■■■□□ 2.88
LSM4-202ENST00000593564 EYA1Q99502 592 aa33.04■■■□□ 2.88
LSM4-202ENST00000593564 POLR3GLQ9BT43 218 aa33.04■■■□□ 2.88
LSM4-202ENST00000593564 SPG7Q9UQ90 795 aa33.04■■■□□ 2.88
LSM4-202ENST00000593564 TOGARAM1Q9Y4F4 1720 aa33.04■■■□□ 2.88
LSM4-202ENST00000593564 MSH5O43196 834 aa33.03■■■□□ 2.88
LSM4-202ENST00000593564 SMARCC1Q92922 1105 aaPredicted RBP33.03■■■□□ 2.88
LSM4-202ENST00000593564 C5P01031 1676 aa33.03■■■□□ 2.88
LSM4-202ENST00000593564 MAP2P11137 1827 aaKnown RBP33.02■■■□□ 2.88
LSM4-202ENST00000593564 ZNF784Q8NCA9 323 aaPredicted RBP33.02■■■□□ 2.88
LSM4-202ENST00000593564 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.02■■■□□ 2.88
LSM4-202ENST00000593564 GPR162Q16538 588 aa33.01■■■□□ 2.87
LSM4-202ENST00000593564 EIF4G2P78344 907 aaKnown RBP eCLIP33■■■□□ 2.87
LSM4-202ENST00000593564 CHD4Q14839 1912 aa32.99■■■□□ 2.87
LSM4-202ENST00000593564 PIGBQ92521 554 aa32.99■■■□□ 2.87
LSM4-202ENST00000593564 ITGB4P16144 1822 aa32.98■■■□□ 2.87
LSM4-202ENST00000593564 FLAD1Q8NFF5 587 aa32.98■■■□□ 2.87
LSM4-202ENST00000593564 HSPA5P11021 654 aaKnown RBP32.97■■■□□ 2.87
LSM4-202ENST00000593564 TAF1LQ8IZX4 1826 aa32.96■■■□□ 2.87
LSM4-202ENST00000593564 NLGN2Q8NFZ4 835 aa32.96■■■□□ 2.87
LSM4-202ENST00000593564 TNNT2P45379 298 aaPredicted RBP32.95■■■□□ 2.87
LSM4-202ENST00000593564 EIF4A2Q14240 407 aaKnown RBP32.95■■■□□ 2.87
LSM4-202ENST00000593564 GOLGB1Q14789 3259 aaKnown RBP32.94■■■□□ 2.86
LSM4-202ENST00000593564 PLEKHG2Q9H7P9 1386 aa32.94■■■□□ 2.86
LSM4-202ENST00000593564 MSL1Q68DK7 614 aa32.93■■■□□ 2.86
LSM4-202ENST00000593564 IFNL2Q8IZJ0 200 aa32.93■■■□□ 2.86
LSM4-202ENST00000593564 C4BP0C0L5 1744 aa32.93■■■□□ 2.86
LSM4-202ENST00000593564 PHKG2P15735 406 aa32.92■■■□□ 2.86
LSM4-202ENST00000593564 PANK3Q9H999 370 aa32.92■■■□□ 2.86
LSM4-202ENST00000593564 AK7Q96M32 723 aa32.91■■■□□ 2.86
LSM4-202ENST00000593564 TMOD3Q9NYL9 352 aa32.91■■■□□ 2.86
LSM4-202ENST00000593564 PELP1Q8IZL8 1130 aaKnown RBP32.89■■■□□ 2.86
LSM4-202ENST00000593564 IGSF1Q8N6C5 1336 aa32.88■■■□□ 2.85
LSM4-202ENST00000593564 LOC102724428A0A0B4J2F2 783 aa32.88■■■□□ 2.85
LSM4-202ENST00000593564 SIK1P57059 783 aa32.88■■■□□ 2.85
LSM4-202ENST00000593564 AMIGO3Q86WK7 504 aa32.87■■■□□ 2.85
LSM4-202ENST00000593564 ASAP1Q9ULH1 1129 aa32.85■■■□□ 2.85
LSM4-202ENST00000593564 CCER1Q8TC90 406 aaPredicted RBP32.84■■■□□ 2.85
LSM4-202ENST00000593564 CD2APQ9Y5K6 639 aa32.84■■■□□ 2.85
LSM4-202ENST00000593564 UBR3Q6ZT12 1888 aa32.83■■■□□ 2.85
LSM4-202ENST00000593564 LINC00116Q8NCU8 138 aa32.83■■■□□ 2.85
LSM4-202ENST00000593564 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP32.82■■■□□ 2.84
LSM4-202ENST00000593564 SSFA2P28290 1259 aa32.82■■■□□ 2.84
LSM4-202ENST00000593564 GRIN3BO60391 1043 aa32.81■■■□□ 2.84
LSM4-202ENST00000593564 PHF14O94880 888 aa32.81■■■□□ 2.84
LSM4-202ENST00000593564 YBX3P16989 372 aaKnown RBP eCLIP32.81■■■□□ 2.842e-10■■■□□ 17.9
LSM4-202ENST00000593564 ATG3Q9NT62 314 aa32.8■■■□□ 2.84
LSM4-202ENST00000593564 ITPK1Q13572 414 aa32.79■■■□□ 2.84
LSM4-202ENST00000593564 ATP6V1AP38606 617 aa32.78■■■□□ 2.84
LSM4-202ENST00000593564 SMIM5Q71RC9 77 aa32.78■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms