RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 ARHGEF25Q86VW2 580 aa13.39□□□□□ -0.27
BRCA1-226ENST00000591534 EXOC5O00471 708 aa13.38□□□□□ -0.27
BRCA1-226ENST00000591534 CARD10Q9BWT7 1032 aa13.38□□□□□ -0.27
BRCA1-226ENST00000591534 SLIT3O75094 1523 aa13.38□□□□□ -0.27
BRCA1-226ENST00000591534 KCNQ2O43526 872 aa13.37□□□□□ -0.27
BRCA1-226ENST00000591534 CPSF1Q10570 1443 aaKnown RBP13.37□□□□□ -0.27
BRCA1-226ENST00000591534 QRICH2Q9H0J4 1663 aa13.37□□□□□ -0.27
BRCA1-226ENST00000591534 KTN1Q86UP2 1357 aaKnown RBP13.36□□□□□ -0.27
BRCA1-226ENST00000591534 SOX12O15370 315 aa13.36□□□□□ -0.27
BRCA1-226ENST00000591534 SIN3AQ96ST3 1273 aa13.36□□□□□ -0.27
BRCA1-226ENST00000591534 AXIN2Q9Y2T1 843 aa13.36□□□□□ -0.27
BRCA1-226ENST00000591534 CCDC7Q96M83 1385 aa13.35□□□□□ -0.27
BRCA1-226ENST00000591534 PDAP1Q13442 181 aaKnown RBP13.35□□□□□ -0.27
BRCA1-226ENST00000591534 HDGFL2Q7Z4V5 671 aaPredicted RBP13.35□□□□□ -0.27
BRCA1-226ENST00000591534 BCL9O00512 1426 aa13.35□□□□□ -0.27
BRCA1-226ENST00000591534 PARP4Q9UKK3 1724 aaKnown RBP13.35□□□□□ -0.27
BRCA1-226ENST00000591534 TRPM1Q7Z4N2 1603 aa13.34□□□□□ -0.27
BRCA1-226ENST00000591534 MAP3K13O43283 966 aa13.33□□□□□ -0.28
BRCA1-226ENST00000591534 PSEN1P49768 467 aa13.33□□□□□ -0.28
BRCA1-226ENST00000591534 MARCH10Q8NA82 808 aaPredicted RBP13.33□□□□□ -0.28
BRCA1-226ENST00000591534 CARD11Q9BXL7 1154 aa13.33□□□□□ -0.28
BRCA1-226ENST00000591534 STK32BQ9NY57 414 aa13.33□□□□□ -0.28
BRCA1-226ENST00000591534 SBNO2Q9Y2G9 1366 aa13.32□□□□□ -0.28
BRCA1-226ENST00000591534 NINLQ9Y2I6 1382 aa13.32□□□□□ -0.28
BRCA1-226ENST00000591534 IFNL1Q8IU54 200 aa13.32□□□□□ -0.28
BRCA1-226ENST00000591534 ZNF579Q8NAF0 562 aaKnown RBP13.32□□□□□ -0.28
BRCA1-226ENST00000591534 TMC1Q8TDI8 760 aa13.32□□□□□ -0.28
BRCA1-226ENST00000591534 TERF2IPQ9NYB0 399 aa13.32□□□□□ -0.28
BRCA1-226ENST00000591534 RREB1Q92766 1687 aa13.31□□□□□ -0.28
BRCA1-226ENST00000591534 YY1P25490 414 aa13.31□□□□□ -0.28
BRCA1-226ENST00000591534 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.31□□□□□ -0.28
BRCA1-226ENST00000591534 NLRP2Q9NX02 1062 aa13.31□□□□□ -0.28
BRCA1-226ENST00000591534 ABCC6O95255 1503 aa13.3□□□□□ -0.28
BRCA1-226ENST00000591534 GABBR2O75899 941 aa13.3□□□□□ -0.28
BRCA1-226ENST00000591534 KIF12Q96FN5 646 aa13.3□□□□□ -0.28
BRCA1-226ENST00000591534 PUS7Q96PZ0 661 aaKnown RBP13.3□□□□□ -0.28
BRCA1-226ENST00000591534 PIK3C2AO00443 1686 aa13.3□□□□□ -0.28
BRCA1-226ENST00000591534 USP31Q70CQ4 1352 aa13.3□□□□□ -0.28
BRCA1-226ENST00000591534 IL2RBP14784 551 aa13.29□□□□□ -0.28
BRCA1-226ENST00000591534 TXNRD1Q16881 649 aa13.29□□□□□ -0.28
BRCA1-226ENST00000591534 NUP188Q5SRE5 1749 aa13.29□□□□□ -0.28
BRCA1-226ENST00000591534 LRRC37A3O60309 1634 aa13.28□□□□□ -0.28
BRCA1-226ENST00000591534 PRKCSHP14314 528 aaPredicted RBP13.28□□□□□ -0.28
BRCA1-226ENST00000591534 TONSLQ96HA7 1378 aa13.28□□□□□ -0.28
BRCA1-226ENST00000591534 SLC15A2Q16348 729 aa13.27□□□□□ -0.29
BRCA1-226ENST00000591534 ERBB3P21860 1342 aa13.27□□□□□ -0.29
BRCA1-226ENST00000591534 PEAK1Q9H792 1746 aa13.27□□□□□ -0.29
BRCA1-226ENST00000591534 RGPD3A6NKT7 1758 aaPredicted RBP13.27□□□□□ -0.29
BRCA1-226ENST00000591534 RGPD4Q7Z3J3 1758 aa13.27□□□□□ -0.29
BRCA1-226ENST00000591534 CD44P16070 742 aaKnown RBP13.26□□□□□ -0.29
BRCA1-226ENST00000591534 COL18A1P39060 1754 aa13.26□□□□□ -0.29
BRCA1-226ENST00000591534 TNS2Q63HR2 1409 aa13.26□□□□□ -0.29
BRCA1-226ENST00000591534 EDC4Q6P2E9 1401 aaKnown RBP13.26□□□□□ -0.29
BRCA1-226ENST00000591534 NME9Q86XW9 330 aa13.26□□□□□ -0.29
BRCA1-226ENST00000591534 ANKRD24Q8TF21 1146 aa13.26□□□□□ -0.29
BRCA1-226ENST00000591534 ANO8Q9HCE9 1232 aaPredicted RBP13.26□□□□□ -0.29
BRCA1-226ENST00000591534 NFAT5O94916 1531 aa13.25□□□□□ -0.29
BRCA1-226ENST00000591534 ZBTB7AO95365 584 aa13.25□□□□□ -0.29
BRCA1-226ENST00000591534 PTF1AQ7RTS3 328 aa13.25□□□□□ -0.29
BRCA1-226ENST00000591534 MTFR1LQ9H019 292 aa13.25□□□□□ -0.29
BRCA1-226ENST00000591534 SLC12A5Q9H2X9 1139 aa13.25□□□□□ -0.29
BRCA1-226ENST00000591534 PHF12Q96QT6 1004 aa13.24□□□□□ -0.29
BRCA1-226ENST00000591534 AKAP12Q02952 1782 aa13.23□□□□□ -0.29
BRCA1-226ENST00000591534 IP6K1Q92551 441 aa13.23□□□□□ -0.29
BRCA1-226ENST00000591534 ACSBG1Q96GR2 724 aa13.23□□□□□ -0.29
BRCA1-226ENST00000591534 COG3Q96JB2 828 aa13.23□□□□□ -0.29
BRCA1-226ENST00000591534 HMGB2P26583 209 aaKnown RBP13.22□□□□□ -0.29
BRCA1-226ENST00000591534 PCGF6Q9BYE7 350 aa13.22□□□□□ -0.29
BRCA1-226ENST00000591534 RYDENQ9NUL5 291 aaKnown RBP13.22□□□□□ -0.29
BRCA1-226ENST00000591534 SLC27A3Q5K4L6 730 aa13.21□□□□□ -0.29
BRCA1-226ENST00000591534 A0A1W2PP64 1363 aa13.2□□□□□ -0.3
BRCA1-226ENST00000591534 PTGER2P43116 358 aa13.2□□□□□ -0.3
BRCA1-226ENST00000591534 AMPHP49418 695 aa13.2□□□□□ -0.3
BRCA1-226ENST00000591534 MFRPQ9BY79 579 aa13.2□□□□□ -0.3
BRCA1-226ENST00000591534 CD163L1Q9NR16 1453 aa13.2□□□□□ -0.3
BRCA1-226ENST00000591534 SBF2Q86WG5 1849 aa13.2□□□□□ -0.3
BRCA1-226ENST00000591534 EFCAB3Q8N7B9 438 aa13.19□□□□□ -0.3
BRCA1-226ENST00000591534 DDX54Q8TDD1 881 aaKnown RBP13.19□□□□□ -0.3
BRCA1-226ENST00000591534 LTV1Q96GA3 475 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-226ENST00000591534 PDGFDQ9GZP0 370 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-226ENST00000591534 MON2Q7Z3U7 1717 aa13.19□□□□□ -0.3
BRCA1-226ENST00000591534 WNK3Q9BYP7 1800 aa13.18□□□□□ -0.3
BRCA1-226ENST00000591534 CDCA8Q53HL2 280 aa13.18□□□□□ -0.3
BRCA1-226ENST00000591534 SLC16A10Q8TF71 515 aa13.18□□□□□ -0.3
BRCA1-226ENST00000591534 ARXQ96QS3 562 aa13.18□□□□□ -0.3
BRCA1-226ENST00000591534 SYT17Q9BSW7 474 aa13.18□□□□□ -0.3
BRCA1-226ENST00000591534 FHDC1Q9C0D6 1143 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-226ENST00000591534 ST20-MTHFSA0A0A6YYL1 179 aa13.17□□□□□ -0.3
BRCA1-226ENST00000591534 POLD1P28340 1107 aa13.17□□□□□ -0.3
BRCA1-226ENST00000591534 SYTL4Q96C24 671 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-226ENST00000591534 USP54Q70EL1 1684 aa13.16□□□□□ -0.3
BRCA1-226ENST00000591534 TMF1P82094 1093 aa13.16□□□□□ -0.3
BRCA1-226ENST00000591534 CGNL1Q0VF96 1302 aa13.15□□□□□ -0.3
BRCA1-226ENST00000591534 CASZ1Q86V15 1759 aa13.15□□□□□ -0.3
BRCA1-226ENST00000591534 RGPD5Q99666 1765 aa13.15□□□□□ -0.3
BRCA1-226ENST00000591534 HOXC9P31274 260 aa13.15□□□□□ -0.3
BRCA1-226ENST00000591534 ZCRB1Q8TBF4 217 aaKnown RBP13.15□□□□□ -0.3
BRCA1-226ENST00000591534 TESK2Q96S53 571 aa13.15□□□□□ -0.3
BRCA1-226ENST00000591534 TFCP2L1Q9NZI6 479 aa13.15□□□□□ -0.3
BRCA1-226ENST00000591534 NHSQ6T4R5 1651 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms