RNA–Protein interactions for RNA: ENST00000590704.5

CIRBP-229, Transcript of cold inducible RNA binding protein, human

TSL 2

Gene CIRBP, Length 1,456 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-229	ENST00000590704	ZCRB1	Q8TBF4	217 aa	Known RBP	28.36	■■■□□ 2.13
CIRBP-229	ENST00000590704	RAPGEF4	Q8WZA2	1011 aa		28.36	■■■□□ 2.13
CIRBP-229	ENST00000590704	TAT	P17735	454 aa	Predicted RBP	28.35	■■■□□ 2.13
CIRBP-229	ENST00000590704	BCL9	O00512	1426 aa		28.35	■■■□□ 2.13
CIRBP-229	ENST00000590704	PKD1L3	Q7Z443	1732 aa		28.34	■■■□□ 2.13
CIRBP-229	ENST00000590704	HMOX1	P09601	288 aa		28.34	■■■□□ 2.13
CIRBP-229	ENST00000590704	CYP27B1	O15528	508 aa		28.33	■■■□□ 2.13
CIRBP-229	ENST00000590704	CCDC184	Q52MB2	194 aa		28.33	■■■□□ 2.13
CIRBP-229	ENST00000590704	PTF1A	Q7RTS3	328 aa		28.32	■■■□□ 2.12
CIRBP-229	ENST00000590704	CFAP53	Q96M91	514 aa		28.32	■■■□□ 2.12
CIRBP-229	ENST00000590704	FAM196A	Q6ZSG2	479 aa		28.31	■■■□□ 2.12
CIRBP-229	ENST00000590704	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	28.31	■■■□□ 2.12	4e-13	■□□□□ 8.8
CIRBP-229	ENST00000590704	SBF2	Q86WG5	1849 aa		28.29	■■■□□ 2.12
CIRBP-229	ENST00000590704	DDX54	Q8TDD1	881 aa	Known RBP	28.29	■■■□□ 2.12
CIRBP-229	ENST00000590704	U2SURP	O15042	1029 aa	Known RBP	28.28	■■■□□ 2.12
CIRBP-229	ENST00000590704	PLEKHG2	Q9H7P9	1386 aa		28.28	■■■□□ 2.12
CIRBP-229	ENST00000590704	RSPH6A	Q9H0K4	717 aa		28.27	■■■□□ 2.12
CIRBP-229	ENST00000590704	NKX1-1	Q15270	411 aa	Predicted RBP	28.24	■■■□□ 2.11
CIRBP-229	ENST00000590704	KCNQ2	O43526	872 aa		28.23	■■■□□ 2.11
CIRBP-229	ENST00000590704	TRIM37	O94972	964 aa		28.23	■■■□□ 2.11
CIRBP-229	ENST00000590704	PHACTR3	Q96KR7	559 aa		28.22	■■■□□ 2.11
CIRBP-229	ENST00000590704	SPG7	Q9UQ90	795 aa		28.22	■■■□□ 2.11
CIRBP-229	ENST00000590704	NUDC	Q9Y266	331 aa		28.22	■■■□□ 2.11
CIRBP-229	ENST00000590704	ANP32C	O43423	234 aa		28.21	■■■□□ 2.11
CIRBP-229	ENST00000590704	U2AF1L5	P0DN76	240 aa	Predicted RBP	28.21	■■■□□ 2.11
CIRBP-229	ENST00000590704	PHKG2	P15735	406 aa		28.21	■■■□□ 2.11
CIRBP-229	ENST00000590704	U2AF1	Q01081	240 aa	Known RBP eCLIP	28.21	■■■□□ 2.11
CIRBP-229	ENST00000590704	PCDH11X	Q9BZA7	1347 aa		28.21	■■■□□ 2.11
CIRBP-229	ENST00000590704	PCDH11Y	Q9BZA8	1340 aa		28.21	■■■□□ 2.11
CIRBP-229	ENST00000590704	FCHSD2	O94868	740 aa		28.2	■■■□□ 2.1
CIRBP-229	ENST00000590704	MTHFSD	Q2M296	383 aa	Known RBP	28.2	■■■□□ 2.1
CIRBP-229	ENST00000590704	PLEKHO1	Q53GL0	409 aa	Predicted RBP	28.2	■■■□□ 2.1
CIRBP-229	ENST00000590704	PLEKHF1	Q96S99	279 aa		28.2	■■■□□ 2.1
CIRBP-229	ENST00000590704	TNS1	Q9HBL0	1735 aa	Known RBP	28.2	■■■□□ 2.1
CIRBP-229	ENST00000590704	PRKAR2B	P31323	418 aa		28.18	■■■□□ 2.1
CIRBP-229	ENST00000590704	AMOT	Q4VCS5	1084 aa		28.18	■■■□□ 2.1
CIRBP-229	ENST00000590704	ACSBG1	Q96GR2	724 aa		28.18	■■■□□ 2.1
CIRBP-229	ENST00000590704	CCDC125	Q86Z20	511 aa		28.17	■■■□□ 2.1
CIRBP-229	ENST00000590704	TOGARAM1	Q9Y4F4	1720 aa		28.16	■■■□□ 2.1
CIRBP-229	ENST00000590704	IFNL2	Q8IZJ0	200 aa		28.16	■■■□□ 2.1
CIRBP-229	ENST00000590704	DEFB132	Q7Z7B7	95 aa		28.15	■■■□□ 2.1
CIRBP-229	ENST00000590704	BCL11B	Q9C0K0	894 aa	Predicted RBP	28.15	■■■□□ 2.1
CIRBP-229	ENST00000590704	KAT6B	Q8WYB5	2073 aa		28.15	■■■□□ 2.1
CIRBP-229	ENST00000590704	PRIM1	P49642	420 aa	Known RBP	28.14	■■■□□ 2.09
CIRBP-229	ENST00000590704	ZNF530	Q6P9A1	599 aa	Predicted RBP	28.14	■■■□□ 2.09
CIRBP-229	ENST00000590704	NHS	Q6T4R5	1651 aa		28.14	■■■□□ 2.09
CIRBP-229	ENST00000590704	KDM6A	O15550	1401 aa	Predicted RBP	28.13	■■■□□ 2.09
CIRBP-229	ENST00000590704	ADAMTS8	Q9UP79	889 aa		28.13	■■■□□ 2.09
CIRBP-229	ENST00000590704	DOT1L	Q8TEK3	1739 aa		28.12	■■■□□ 2.09
CIRBP-229	ENST00000590704	AKAP4	Q5JQC9	854 aa		28.09	■■■□□ 2.09
CIRBP-229	ENST00000590704	PNISR	Q8TF01	805 aa	Known RBP	28.09	■■■□□ 2.09
CIRBP-229	ENST00000590704	CAMKK2	Q96RR4	588 aa		28.09	■■■□□ 2.09
CIRBP-229	ENST00000590704	LGR6	Q9HBX8	967 aa		28.08	■■■□□ 2.09
CIRBP-229	ENST00000590704	APBA3	O96018	575 aa		28.08	■■■□□ 2.09
CIRBP-229	ENST00000590704	EN1	Q05925	392 aa	Predicted RBP	28.08	■■■□□ 2.09
CIRBP-229	ENST00000590704	PROM2	Q8N271	834 aa		28.08	■■■□□ 2.09
CIRBP-229	ENST00000590704	ITGB4	P16144	1822 aa		28.08	■■■□□ 2.08
CIRBP-229	ENST00000590704	ADAMTS7	Q9UKP4	1686 aa		28.07	■■■□□ 2.08
CIRBP-229	ENST00000590704	MPRIP	Q6WCQ1	1025 aa		28.07	■■■□□ 2.08
CIRBP-229	ENST00000590704	DCAF5	Q96JK2	942 aa		28.06	■■■□□ 2.08
CIRBP-229	ENST00000590704	BTAF1	O14981	1849 aa		28.06	■■■□□ 2.08
CIRBP-229	ENST00000590704	PLSCR1	O15162	318 aa		28.05	■■■□□ 2.08
CIRBP-229	ENST00000590704	DIEXF	Q68CQ4	756 aa	Known RBP	28.05	■■■□□ 2.08
CIRBP-229	ENST00000590704	PIGB	Q92521	554 aa		28.05	■■■□□ 2.08
CIRBP-229	ENST00000590704	IL17RE	Q8NFR9	667 aa		28.04	■■■□□ 2.08
CIRBP-229	ENST00000590704	EZH2	Q15910	746 aa	Known RBP	28.03	■■■□□ 2.08
CIRBP-229	ENST00000590704	GAS2L2	Q8NHY3	880 aa		28.03	■■■□□ 2.08
CIRBP-229	ENST00000590704	SCN11A	Q9UI33	1791 aa		28.03	■■■□□ 2.08
CIRBP-229	ENST00000590704	RNMT	O43148	476 aa	Known RBP	28.02	■■■□□ 2.08
CIRBP-229	ENST00000590704	C1orf141	Q5JVX7	400 aa		28.02	■■■□□ 2.08
CIRBP-229	ENST00000590704	ERVV-2	B6SEH9	535 aa		28.02	■■■□□ 2.08
CIRBP-229	ENST00000590704	HSP90AB1	P08238	724 aa	Known RBP	28.02	■■■□□ 2.08
CIRBP-229	ENST00000590704	MRS2	Q9HD23	443 aa		28.02	■■■□□ 2.08
CIRBP-229	ENST00000590704	SYTL4	Q96C24	671 aa	Predicted RBP	28.01	■■■□□ 2.07
CIRBP-229	ENST00000590704	BAG6	P46379	1132 aa		28	■■■□□ 2.07
CIRBP-229	ENST00000590704	SF3B2	Q13435	895 aa	Known RBP	28	■■■□□ 2.07
CIRBP-229	ENST00000590704	CCDC146	Q8IYE0	955 aa		28	■■■□□ 2.07
CIRBP-229	ENST00000590704	VIRMA	Q69YN4	1812 aa	Known RBP	28	■■■□□ 2.07
CIRBP-229	ENST00000590704	WDR43	Q15061	677 aa	Known RBP eCLIP	27.99	■■■□□ 2.07
CIRBP-229	ENST00000590704	MAP3K5	Q99683	1374 aa		27.98	■■■□□ 2.07
CIRBP-229	ENST00000590704	GNAT3	A8MTJ3	354 aa		27.98	■■■□□ 2.07
CIRBP-229	ENST00000590704	DLG5	Q8TDM6	1919 aa		27.97	■■■□□ 2.07
CIRBP-229	ENST00000590704	CEMIP	Q8WUJ3	1361 aa		27.97	■■■□□ 2.07
CIRBP-229	ENST00000590704	NFATC2IP	Q8NCF5	419 aa		27.96	■■■□□ 2.07
CIRBP-229	ENST00000590704	MRC1	P22897	1456 aa		27.96	■■■□□ 2.07
CIRBP-229	ENST00000590704	NFE2L2	Q16236	605 aa		27.95	■■■□□ 2.07
CIRBP-229	ENST00000590704	MIER1	Q8N108	512 aa		27.95	■■■□□ 2.07
CIRBP-229	ENST00000590704	RUNDC1	Q96C34	613 aa		27.95	■■■□□ 2.07
CIRBP-229	ENST00000590704	ASAP1	Q9ULH1	1129 aa		27.95	■■■□□ 2.07
CIRBP-229	ENST00000590704	RGPD3	A6NKT7	1758 aa	Predicted RBP	27.95	■■■□□ 2.07
CIRBP-229	ENST00000590704	RGPD4	Q7Z3J3	1758 aa		27.95	■■■□□ 2.07
CIRBP-229	ENST00000590704	ATG3	Q9NT62	314 aa		27.95	■■■□□ 2.06
CIRBP-229	ENST00000590704	TMPO	P42166	694 aa	Known RBP	27.94	■■■□□ 2.06
CIRBP-229	ENST00000590704	DCTN1	Q14203	1278 aa		27.94	■■■□□ 2.06
CIRBP-229	ENST00000590704	PNN	Q9H307	717 aa	Known RBP	27.94	■■■□□ 2.06
CIRBP-229	ENST00000590704	SLC52A2	Q9HAB3	445 aa		27.94	■■■□□ 2.06
CIRBP-229	ENST00000590704	LRRC4B	Q9NT99	713 aa		27.94	■■■□□ 2.06
CIRBP-229	ENST00000590704	RREB1	Q92766	1687 aa		27.93	■■■□□ 2.06
CIRBP-229	ENST00000590704	LY75	O60449	1722 aa		27.92	■■■□□ 2.06
CIRBP-229	ENST00000590704	TXNRD1	Q16881	649 aa		27.92	■■■□□ 2.06

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms