RNA–Protein interactions for RNA: ENST00000590454.2

R3HDM4-206, Transcript of R3H domain containing 4, humanhuman

TSL 3

Gene R3HDM4, Length 1,006 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-206ENST00000590454 NHSQ6T4R5 1651 aa29.34■■■□□ 2.29
R3HDM4-206ENST00000590454 SENP3-EIF4A1A0A087X0R7 540 aa29.33■■■□□ 2.29
R3HDM4-206ENST00000590454 IL2RBP14784 551 aa29.33■■■□□ 2.29
R3HDM4-206ENST00000590454 C1QTNF8P60827 252 aa29.33■■■□□ 2.29
R3HDM4-206ENST00000590454 CNGB1Q14028 1251 aaPredicted RBP29.33■■■□□ 2.29
R3HDM4-206ENST00000590454 ERBB3P21860 1342 aa29.32■■■□□ 2.28
R3HDM4-206ENST00000590454 LTN1O94822 1766 aa29.31■■■□□ 2.28
R3HDM4-206ENST00000590454 CC2D1BQ5T0F9 858 aaKnown RBP29.31■■■□□ 2.28
R3HDM4-206ENST00000590454 NSD2O96028 1365 aa29.3■■■□□ 2.28
R3HDM4-206ENST00000590454 TNNT2P45379 298 aaPredicted RBP29.3■■■□□ 2.28
R3HDM4-206ENST00000590454 RRS1Q15050 365 aaKnown RBP29.29■■■□□ 2.28
R3HDM4-206ENST00000590454 GPR162Q16538 588 aa29.29■■■□□ 2.28
R3HDM4-206ENST00000590454 ZNF827Q17R98 1081 aa29.29■■■□□ 2.28
R3HDM4-206ENST00000590454 PAPPAQ13219 1627 aa29.27■■■□□ 2.28
R3HDM4-206ENST00000590454 MAP3K19Q56UN5 1328 aa29.27■■■□□ 2.28
R3HDM4-206ENST00000590454 MORC1Q86VD1 984 aa29.27■■■□□ 2.28
R3HDM4-206ENST00000590454 LRRC4BQ9NT99 713 aa29.27■■■□□ 2.28
R3HDM4-206ENST00000590454 CHD4Q14839 1912 aa29.26■■■□□ 2.27
R3HDM4-206ENST00000590454 SLC16A10Q8TF71 515 aa29.26■■■□□ 2.27
R3HDM4-206ENST00000590454 ANKRD24Q8TF21 1146 aa29.25■■■□□ 2.27
R3HDM4-206ENST00000590454 NPC1L1Q9UHC9 1359 aa29.25■■■□□ 2.27
R3HDM4-206ENST00000590454 UTRNP46939 3433 aa29.24■■■□□ 2.27
R3HDM4-206ENST00000590454 AKT1S1Q96B36 256 aa29.23■■■□□ 2.27
R3HDM4-206ENST00000590454 POLD1P28340 1107 aa29.22■■■□□ 2.27
R3HDM4-206ENST00000590454 SLC27A3Q5K4L6 730 aa29.22■■■□□ 2.27
R3HDM4-206ENST00000590454 EMILIN1Q9Y6C2 1016 aa29.22■■■□□ 2.27
R3HDM4-206ENST00000590454 MAP2P11137 1827 aaKnown RBP29.21■■■□□ 2.27
R3HDM4-206ENST00000590454 KLHL34Q8N239 644 aa29.2■■■□□ 2.26
R3HDM4-206ENST00000590454 BTAF1O14981 1849 aa29.2■■■□□ 2.26
R3HDM4-206ENST00000590454 POLKQ9UBT6 870 aa29.19■■■□□ 2.26
R3HDM4-206ENST00000590454 HOXC9P31274 260 aa29.18■■■□□ 2.26
R3HDM4-206ENST00000590454 AMPHP49418 695 aa29.18■■■□□ 2.26
R3HDM4-206ENST00000590454 IP6K1Q92551 441 aa29.18■■■□□ 2.26
R3HDM4-206ENST00000590454 DDX54Q8TDD1 881 aaKnown RBP29.17■■■□□ 2.26
R3HDM4-206ENST00000590454 GIGYF1O75420 1035 aaPredicted RBP29.16■■■□□ 2.26
R3HDM4-206ENST00000590454 PPM1GO15355 546 aaPredicted RBP29.15■■■□□ 2.26
R3HDM4-206ENST00000590454 PELP1Q8IZL8 1130 aaKnown RBP29.15■■■□□ 2.26
R3HDM4-206ENST00000590454 TFCP2L1Q9NZI6 479 aa29.15■■■□□ 2.26
R3HDM4-206ENST00000590454 PNPLA7Q6ZV29 1317 aa29.15■■■□□ 2.26
R3HDM4-206ENST00000590454 HSP90AB2PQ58FF8 381 aa29.13■■■□□ 2.25
R3HDM4-206ENST00000590454 RTL1A6NKG5 1358 aa29.13■■■□□ 2.25
R3HDM4-206ENST00000590454 LTV1Q96GA3 475 aaPredicted RBP29.11■■■□□ 2.25
R3HDM4-206ENST00000590454 FLT4P35916 1363 aa29.11■■■□□ 2.25
R3HDM4-206ENST00000590454 SYTL4Q96C24 671 aaPredicted RBP29.1■■■□□ 2.25
R3HDM4-206ENST00000590454 SMG6Q86US8 1419 aaKnown RBP29.1■■■□□ 2.25
R3HDM4-206ENST00000590454 PRIM1P49642 420 aaKnown RBP29.08■■■□□ 2.25
R3HDM4-206ENST00000590454 KCNQ4P56696 695 aa29.08■■■□□ 2.25
R3HDM4-206ENST00000590454 NLGN2Q8NFZ4 835 aa29.08■■■□□ 2.25
R3HDM4-206ENST00000590454 QSER1Q2KHR3 1735 aa29.08■■■□□ 2.25
R3HDM4-206ENST00000590454 KAT6BQ8WYB5 2073 aa29.08■■■□□ 2.25
R3HDM4-206ENST00000590454 KIF24Q5T7B8 1368 aa29.07■■■□□ 2.24
R3HDM4-206ENST00000590454 INSRP06213 1382 aa29.06■■■□□ 2.24
R3HDM4-206ENST00000590454 MTHFSP49914 203 aa29.06■■■□□ 2.24
R3HDM4-206ENST00000590454 GRIN3BO60391 1043 aa29.05■■■□□ 2.24
R3HDM4-206ENST00000590454 RGPD2P0DJD1 1756 aa29.04■■■□□ 2.24
R3HDM4-206ENST00000590454 COL24A1Q17RW2 1714 aa29.04■■■□□ 2.24
R3HDM4-206ENST00000590454 PPP2R1AP30153 589 aa29.04■■■□□ 2.24
R3HDM4-206ENST00000590454 ZCRB1Q8TBF4 217 aaKnown RBP29.01■■■□□ 2.23
R3HDM4-206ENST00000590454 CCNL1Q9UK58 526 aaPredicted RBP29.01■■■□□ 2.23
R3HDM4-206ENST00000590454 MSH5O43196 834 aa29■■■□□ 2.23
R3HDM4-206ENST00000590454 YBX3P16989 372 aaKnown RBP eCLIP28.99■■■□□ 2.232e-6■□□□□ 8.5
R3HDM4-206ENST00000590454 EIF4A2Q14240 407 aaKnown RBP28.99■■■□□ 2.23
R3HDM4-206ENST00000590454 IFFO2Q5TF58 517 aa28.99■■■□□ 2.23
R3HDM4-206ENST00000590454 NBPF6Q5VWK0 638 aa28.98■■■□□ 2.23
R3HDM4-206ENST00000590454 NBPF4Q96M43 638 aa28.98■■■□□ 2.23
R3HDM4-206ENST00000590454 FAM208AQ9UK61 1670 aaKnown RBP28.98■■■□□ 2.23
R3HDM4-206ENST00000590454 COL23A1Q86Y22 540 aaPredicted RBP28.97■■■□□ 2.23
R3HDM4-206ENST00000590454 RALBP1Q15311 655 aa28.96■■■□□ 2.23
R3HDM4-206ENST00000590454 USHBP1Q8N6Y0 703 aa28.96■■■□□ 2.23
R3HDM4-206ENST00000590454 SHANK3Q9BYB0 1731 aa28.96■■■□□ 2.23
R3HDM4-206ENST00000590454 PRKRIP1Q9H875 184 aaPredicted RBP28.95■■■□□ 2.22
R3HDM4-206ENST00000590454 COL3A1P02461 1466 aaPredicted RBP28.94■■■□□ 2.22
R3HDM4-206ENST00000590454 TUBGCP6Q96RT7 1819 aa28.94■■■□□ 2.22
R3HDM4-206ENST00000590454 LY75O60449 1722 aa28.94■■■□□ 2.22
R3HDM4-206ENST00000590454 DOT1LQ8TEK3 1739 aa28.92■■■□□ 2.22
R3HDM4-206ENST00000590454 HMGB2P26583 209 aaKnown RBP28.92■■■□□ 2.22
R3HDM4-206ENST00000590454 EYA1Q99502 592 aa28.92■■■□□ 2.22
R3HDM4-206ENST00000590454 IL13P35225 146 aa28.91■■■□□ 2.22
R3HDM4-206ENST00000590454 MSL1Q68DK7 614 aa28.9■■■□□ 2.22
R3HDM4-206ENST00000590454 MEGF6O75095 1541 aa28.89■■■□□ 2.22
R3HDM4-206ENST00000590454 CD2APQ9Y5K6 639 aa28.89■■■□□ 2.22
R3HDM4-206ENST00000590454 FLAD1Q8NFF5 587 aa28.87■■■□□ 2.21
R3HDM4-206ENST00000590454 MYBBP1AQ9BQG0 1328 aaKnown RBP28.87■■■□□ 2.21
R3HDM4-206ENST00000590454 ATP10DQ9P241 1426 aa28.86■■■□□ 2.21
R3HDM4-206ENST00000590454 DIAPH1O60610 1272 aaKnown RBP28.85■■■□□ 2.21
R3HDM4-206ENST00000590454 RAPGEF4Q8WZA2 1011 aa28.85■■■□□ 2.21
R3HDM4-206ENST00000590454 NCAPD2Q15021 1401 aa28.85■■■□□ 2.21
R3HDM4-206ENST00000590454 GPBP1L1Q9HC44 474 aaPredicted RBP28.84■■■□□ 2.21
R3HDM4-206ENST00000590454 IGSF1Q8N6C5 1336 aa28.84■■■□□ 2.21
R3HDM4-206ENST00000590454 GOLGB1Q14789 3259 aaKnown RBP28.82■■■□□ 2.2
R3HDM4-206ENST00000590454 AEBP1Q8IUX7 1158 aa28.82■■■□□ 2.2
R3HDM4-206ENST00000590454 CFAP53Q96M91 514 aa28.82■■■□□ 2.2
R3HDM4-206ENST00000590454 TATP17735 454 aaPredicted RBP28.81■■■□□ 2.2
R3HDM4-206ENST00000590454 ANP32CO43423 234 aa28.8■■■□□ 2.2
R3HDM4-206ENST00000590454 PALLDQ8WX93 1383 aa28.78■■■□□ 2.2
R3HDM4-206ENST00000590454 PCDH11XQ9BZA7 1347 aa28.77■■■□□ 2.2
R3HDM4-206ENST00000590454 PCDH11YQ9BZA8 1340 aa28.77■■■□□ 2.2
R3HDM4-206ENST00000590454 SULT6B1Q6IMI4 303 aa28.77■■■□□ 2.2
R3HDM4-206ENST00000590454 MPRIPQ6WCQ1 1025 aa28.77■■■□□ 2.2
R3HDM4-206ENST00000590454 U2SURPO15042 1029 aaKnown RBP28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 219.6 ms