RNA–Protein interactions for RNA: ENST00000586558.5

DDX39A-204, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 1,127 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-204ENST00000586558 BRWD3Q6RI45 1802 aa25.65■■□□□ 1.7
DDX39A-204ENST00000586558 AEBP1Q8IUX7 1158 aa25.64■■□□□ 1.7
DDX39A-204ENST00000586558 ZCRB1Q8TBF4 217 aaKnown RBP25.63■■□□□ 1.69
DDX39A-204ENST00000586558 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.63■■□□□ 1.69
DDX39A-204ENST00000586558 U2AF1L5P0DN76 240 aaPredicted RBP25.6■■□□□ 1.69
DDX39A-204ENST00000586558 U2AF1Q01081 240 aaKnown RBP eCLIP25.6■■□□□ 1.692e-6■□□□□ 11
DDX39A-204ENST00000586558 SPG7Q9UQ90 795 aa25.6■■□□□ 1.69
DDX39A-204ENST00000586558 PKD1L3Q7Z443 1732 aa25.6■■□□□ 1.69
DDX39A-204ENST00000586558 HMOX1P09601 288 aa25.59■■□□□ 1.69
DDX39A-204ENST00000586558 PCDH11XQ9BZA7 1347 aa25.59■■□□□ 1.69
DDX39A-204ENST00000586558 PCDH11YQ9BZA8 1340 aa25.59■■□□□ 1.69
DDX39A-204ENST00000586558 DIEXFQ68CQ4 756 aaKnown RBP25.58■■□□□ 1.69
DDX39A-204ENST00000586558 BCL9O00512 1426 aa25.57■■□□□ 1.68
DDX39A-204ENST00000586558 AMOTQ4VCS5 1084 aa25.57■■□□□ 1.68
DDX39A-204ENST00000586558 FAM196AQ6ZSG2 479 aa25.57■■□□□ 1.68
DDX39A-204ENST00000586558 MARCH10Q8NA82 808 aaPredicted RBP25.57■■□□□ 1.68
DDX39A-204ENST00000586558 FCHSD2O94868 740 aa25.56■■□□□ 1.68
DDX39A-204ENST00000586558 PLEKHO1Q53GL0 409 aaPredicted RBP25.56■■□□□ 1.68
DDX39A-204ENST00000586558 DDX54Q8TDD1 881 aaKnown RBP25.54■■□□□ 1.68
DDX39A-204ENST00000586558 RSPH6AQ9H0K4 717 aa25.54■■□□□ 1.68
DDX39A-204ENST00000586558 SHANK3Q9BYB0 1731 aa25.54■■□□□ 1.68
DDX39A-204ENST00000586558 WDR43Q15061 677 aaKnown RBP eCLIP25.52■■□□□ 1.68
DDX39A-204ENST00000586558 FAM182BQ5T319 152 aa25.52■■□□□ 1.68
DDX39A-204ENST00000586558 CYP27B1O15528 508 aa25.51■■□□□ 1.67
DDX39A-204ENST00000586558 PRKAR2BP31323 418 aa25.51■■□□□ 1.67
DDX39A-204ENST00000586558 PNNQ9H307 717 aaKnown RBP25.51■■□□□ 1.67
DDX39A-204ENST00000586558 MRS2Q9HD23 443 aa25.5■■□□□ 1.67
DDX39A-204ENST00000586558 ZNF530Q6P9A1 599 aaPredicted RBP25.49■■□□□ 1.67
DDX39A-204ENST00000586558 IFNL2Q8IZJ0 200 aa25.49■■□□□ 1.67
DDX39A-204ENST00000586558 NEFMP07197 916 aa25.47■■□□□ 1.67
DDX39A-204ENST00000586558 PHKG2P15735 406 aa25.47■■□□□ 1.67
DDX39A-204ENST00000586558 NKX1-1Q15270 411 aaPredicted RBP25.47■■□□□ 1.67
DDX39A-204ENST00000586558 CCDC184Q52MB2 194 aa25.47■■□□□ 1.67
DDX39A-204ENST00000586558 HSP90AB1P08238 724 aaKnown RBP25.46■■□□□ 1.67
DDX39A-204ENST00000586558 C1orf141Q5JVX7 400 aa25.46■■□□□ 1.67
DDX39A-204ENST00000586558 CCDC125Q86Z20 511 aa25.45■■□□□ 1.66
DDX39A-204ENST00000586558 GAS2L2Q8NHY3 880 aa25.45■■□□□ 1.66
DDX39A-204ENST00000586558 MTHFSDQ2M296 383 aaKnown RBP25.44■■□□□ 1.66
DDX39A-204ENST00000586558 AKAP4Q5JQC9 854 aa25.43■■□□□ 1.66
DDX39A-204ENST00000586558 PHACTR3Q96KR7 559 aa25.43■■□□□ 1.66
DDX39A-204ENST00000586558 PLEKHF1Q96S99 279 aa25.43■■□□□ 1.66
DDX39A-204ENST00000586558 ADAMTS8Q9UP79 889 aa25.43■■□□□ 1.66
DDX39A-204ENST00000586558 EP400Q96L91 3159 aa25.42■■□□□ 1.66
DDX39A-204ENST00000586558 CCER2I3L3R5 266 aa25.42■■□□□ 1.66
DDX39A-204ENST00000586558 PNISRQ8TF01 805 aaKnown RBP25.42■■□□□ 1.66
DDX39A-204ENST00000586558 UPF1Q92900 1129 aaKnown RBP eCLIP25.42■■□□□ 1.66
DDX39A-204ENST00000586558 MAPK8IP3Q9UPT6 1336 aa25.41■■□□□ 1.66
DDX39A-204ENST00000586558 DCAF5Q96JK2 942 aa25.41■■□□□ 1.66
DDX39A-204ENST00000586558 BCL11BQ9C0K0 894 aaPredicted RBP25.41■■□□□ 1.66
DDX39A-204ENST00000586558 NHSQ6T4R5 1651 aa25.4■■□□□ 1.66
DDX39A-204ENST00000586558 TRIM37O94972 964 aa25.4■■□□□ 1.66
DDX39A-204ENST00000586558 SBF2Q86WG5 1849 aa25.38■■□□□ 1.65
DDX39A-204ENST00000586558 SF3B2Q13435 895 aaKnown RBP25.38■■□□□ 1.65
DDX39A-204ENST00000586558 MAP3K5Q99683 1374 aa25.38■■□□□ 1.65
DDX39A-204ENST00000586558 DOT1LQ8TEK3 1739 aa25.37■■□□□ 1.65
DDX39A-204ENST00000586558 RUNDC1Q96C34 613 aa25.37■■□□□ 1.65
DDX39A-204ENST00000586558 ACSBG1Q96GR2 724 aa25.37■■□□□ 1.65
DDX39A-204ENST00000586558 KDM6AO15550 1401 aaPredicted RBP25.37■■□□□ 1.65
DDX39A-204ENST00000586558 GNAT3A8MTJ3 354 aa25.36■■□□□ 1.65
DDX39A-204ENST00000586558 TNS1Q9HBL0 1735 aaKnown RBP25.35■■□□□ 1.65
DDX39A-204ENST00000586558 ERVV-2B6SEH9 535 aa25.35■■□□□ 1.65
DDX39A-204ENST00000586558 KCNQ2O43526 872 aa25.35■■□□□ 1.65
DDX39A-204ENST00000586558 PRIM1P49642 420 aaKnown RBP25.35■■□□□ 1.65
DDX39A-204ENST00000586558 NFE2L2Q16236 605 aa25.34■■□□□ 1.65
DDX39A-204ENST00000586558 TOGARAM1Q9Y4F4 1720 aa25.34■■□□□ 1.65
DDX39A-204ENST00000586558 MPRIPQ6WCQ1 1025 aa25.33■■□□□ 1.65
DDX39A-204ENST00000586558 MIER1Q8N108 512 aa25.33■■□□□ 1.65
DDX39A-204ENST00000586558 SYTL4Q96C24 671 aaPredicted RBP25.33■■□□□ 1.65
DDX39A-204ENST00000586558 ADAMTS7Q9UKP4 1686 aa25.32■■□□□ 1.64
DDX39A-204ENST00000586558 HTATSF1O43719 755 aaKnown RBP25.32■■□□□ 1.64
DDX39A-204ENST00000586558 CCDC146Q8IYE0 955 aa25.32■■□□□ 1.64
DDX39A-204ENST00000586558 BAG6P46379 1132 aa25.31■■□□□ 1.64
DDX39A-204ENST00000586558 RNMTO43148 476 aaKnown RBP25.3■■□□□ 1.64
DDX39A-204ENST00000586558 APBA3O96018 575 aa25.3■■□□□ 1.64
DDX39A-204ENST00000586558 PTF1AQ7RTS3 328 aa25.3■■□□□ 1.64
DDX39A-204ENST00000586558 RTF1Q92541 710 aaKnown RBP25.3■■□□□ 1.64
DDX39A-204ENST00000586558 TMOD3Q9NYL9 352 aa25.3■■□□□ 1.64
DDX39A-204ENST00000586558 MRC1P22897 1456 aa25.29■■□□□ 1.64
DDX39A-204ENST00000586558 SCN11AQ9UI33 1791 aa25.28■■□□□ 1.64
DDX39A-204ENST00000586558 TMPOP42166 694 aaKnown RBP25.28■■□□□ 1.64
DDX39A-204ENST00000586558 CABP4P57796 275 aa25.28■■□□□ 1.64
DDX39A-204ENST00000586558 CEMIPQ8WUJ3 1361 aa25.28■■□□□ 1.64
DDX39A-204ENST00000586558 PLSCR1O15162 318 aa25.27■■□□□ 1.64
DDX39A-204ENST00000586558 LGR6Q9HBX8 967 aa25.27■■□□□ 1.64
DDX39A-204ENST00000586558 BTAF1O14981 1849 aa25.27■■□□□ 1.64
DDX39A-204ENST00000586558 LMOD3Q0VAK6 560 aa25.26■■□□□ 1.63
DDX39A-204ENST00000586558 FAM9BQ8IZU0 186 aa25.26■■□□□ 1.63
DDX39A-204ENST00000586558 IL17REQ8NFR9 667 aa25.26■■□□□ 1.63
DDX39A-204ENST00000586558 PIGBQ92521 554 aa25.26■■□□□ 1.63
DDX39A-204ENST00000586558 SLC52A2Q9HAB3 445 aa25.26■■□□□ 1.63
DDX39A-204ENST00000586558 RGPD3A6NKT7 1758 aaPredicted RBP25.26■■□□□ 1.63
DDX39A-204ENST00000586558 RGPD4Q7Z3J3 1758 aa25.26■■□□□ 1.63
DDX39A-204ENST00000586558 ITGB4P16144 1822 aa25.25■■□□□ 1.63
DDX39A-204ENST00000586558 RIPK4P57078 832 aa25.24■■□□□ 1.63
DDX39A-204ENST00000586558 TEFQ10587 303 aa25.24■■□□□ 1.63
DDX39A-204ENST00000586558 SMARCC1Q92922 1105 aaPredicted RBP25.23■■□□□ 1.63
DDX39A-204ENST00000586558 KAT6BQ8WYB5 2073 aa25.23■■□□□ 1.63
DDX39A-204ENST00000586558 APAF1O14727 1248 aa25.22■■□□□ 1.63
DDX39A-204ENST00000586558 DEFB132Q7Z7B7 95 aa25.22■■□□□ 1.63
DDX39A-204ENST00000586558 NFATC2IPQ8NCF5 419 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms