RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SYTL4Q96C24 671 aaPredicted RBP16.92■□□□□ 0.3
SS18-225ENST00000585121 MEGF6O75095 1541 aa16.92■□□□□ 0.3
SS18-225ENST00000585121 PROM2Q8N271 834 aa16.91■□□□□ 0.3
SS18-225ENST00000585121 STK32BQ9NY57 414 aa16.91■□□□□ 0.3
SS18-225ENST00000585121 PCDH11XQ9BZA7 1347 aa16.9■□□□□ 0.3
SS18-225ENST00000585121 PCDH11YQ9BZA8 1340 aa16.9■□□□□ 0.3
SS18-225ENST00000585121 RGPD3A6NKT7 1758 aaPredicted RBP16.9■□□□□ 0.3
SS18-225ENST00000585121 RGPD4Q7Z3J3 1758 aa16.9■□□□□ 0.3
SS18-225ENST00000585121 PRIM1P49642 420 aaKnown RBP16.9■□□□□ 0.3
SS18-225ENST00000585121 NUP188Q5SRE5 1749 aa16.9■□□□□ 0.3
SS18-225ENST00000585121 KAT6BQ8WYB5 2073 aa16.89■□□□□ 0.29
SS18-225ENST00000585121 SPG7Q9UQ90 795 aa16.89■□□□□ 0.29
SS18-225ENST00000585121 NHSQ6T4R5 1651 aa16.88■□□□□ 0.29
SS18-225ENST00000585121 EYA1Q99502 592 aa16.88■□□□□ 0.29
SS18-225ENST00000585121 RGPD2P0DJD1 1756 aa16.88■□□□□ 0.29
SS18-225ENST00000585121 EIF4A2Q14240 407 aaKnown RBP16.87■□□□□ 0.29
SS18-225ENST00000585121 ANO8Q9HCE9 1232 aaPredicted RBP16.87■□□□□ 0.29
SS18-225ENST00000585121 LRP5O75197 1615 aa16.86■□□□□ 0.29
SS18-225ENST00000585121 MAP2P11137 1827 aaKnown RBP16.86■□□□□ 0.29
SS18-225ENST00000585121 SLC15A2Q16348 729 aa16.86■□□□□ 0.29
SS18-225ENST00000585121 SLC27A3Q5K4L6 730 aa16.86■□□□□ 0.29
SS18-225ENST00000585121 SPON1Q9HCB6 807 aa16.86■□□□□ 0.29
SS18-225ENST00000585121 AMER1Q5JTC6 1135 aaPredicted RBP16.85■□□□□ 0.29
SS18-225ENST00000585121 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.85■□□□□ 0.293e-7■■□□□ 13.5
SS18-225ENST00000585121 ANKRD26Q9UPS8 1709 aa16.85■□□□□ 0.29
SS18-225ENST00000585121 CYP27B1O15528 508 aa16.83■□□□□ 0.28
SS18-225ENST00000585121 PPP1R1BQ9UD71 204 aaPredicted RBP16.83■□□□□ 0.28
SS18-225ENST00000585121 NCAPD2Q15021 1401 aa16.82■□□□□ 0.28
SS18-225ENST00000585121 HMGB2P26583 209 aaKnown RBP16.81■□□□□ 0.28
SS18-225ENST00000585121 BTAF1O14981 1849 aa16.81■□□□□ 0.28
SS18-225ENST00000585121 IGSF1Q8N6C5 1336 aa16.81■□□□□ 0.28
SS18-225ENST00000585121 PER1O15534 1290 aaPredicted RBP16.8■□□□□ 0.28
SS18-225ENST00000585121 CC2D1BQ5T0F9 858 aaKnown RBP16.8■□□□□ 0.28
SS18-225ENST00000585121 MPRIPQ6WCQ1 1025 aa16.8■□□□□ 0.28
SS18-225ENST00000585121 IFNL2Q8IZJ0 200 aa16.8■□□□□ 0.28
SS18-225ENST00000585121 LRRC4BQ9NT99 713 aa16.8■□□□□ 0.28
SS18-225ENST00000585121 CCNL1Q9UK58 526 aaPredicted RBP16.8■□□□□ 0.28
SS18-225ENST00000585121 NKX1-1Q15270 411 aaPredicted RBP16.79■□□□□ 0.28
SS18-225ENST00000585121 PLEKHO1Q53GL0 409 aaPredicted RBP16.79■□□□□ 0.28
SS18-225ENST00000585121 PLEKHG2Q9H7P9 1386 aa16.78■□□□□ 0.28
SS18-225ENST00000585121 ZBTB7AO95365 584 aa16.78■□□□□ 0.28
SS18-225ENST00000585121 SMARCC1Q92922 1105 aaPredicted RBP16.78■□□□□ 0.28
SS18-225ENST00000585121 SHANK3Q9BYB0 1731 aa16.78■□□□□ 0.28
SS18-225ENST00000585121 MTHFSP49914 203 aa16.77■□□□□ 0.28
SS18-225ENST00000585121 AMOTQ4VCS5 1084 aa16.77■□□□□ 0.28
SS18-225ENST00000585121 DOT1LQ8TEK3 1739 aa16.77■□□□□ 0.28
SS18-225ENST00000585121 HSP90AB1P08238 724 aaKnown RBP16.76■□□□□ 0.27
SS18-225ENST00000585121 PHKG2P15735 406 aa16.76■□□□□ 0.27
SS18-225ENST00000585121 CNGB1Q14028 1251 aaPredicted RBP16.76■□□□□ 0.27
SS18-225ENST00000585121 TFCP2L1Q9NZI6 479 aa16.76■□□□□ 0.27
SS18-225ENST00000585121 ZNF827Q17R98 1081 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 AKT1S1Q96B36 256 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 PDGFDQ9GZP0 370 aaPredicted RBP16.75■□□□□ 0.27
SS18-225ENST00000585121 MTFR1LQ9H019 292 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 TMOD3Q9NYL9 352 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 ATF5Q9Y2D1 282 aaPredicted RBP16.75■□□□□ 0.27
SS18-225ENST00000585121 NPC1L1Q9UHC9 1359 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 IL13P35225 146 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 KCNQ4P56696 695 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 SULT6B1Q6IMI4 303 aa16.75■□□□□ 0.27
SS18-225ENST00000585121 PKD1L3Q7Z443 1732 aa16.74■□□□□ 0.27
SS18-225ENST00000585121 ZNF530Q6P9A1 599 aaPredicted RBP16.74■□□□□ 0.27
SS18-225ENST00000585121 PIGBQ92521 554 aa16.74■□□□□ 0.27
SS18-225ENST00000585121 PALLDQ8WX93 1383 aa16.74■□□□□ 0.27
SS18-225ENST00000585121 C1orf141Q5JVX7 400 aa16.73■□□□□ 0.27
SS18-225ENST00000585121 DIAPH1O60610 1272 aaKnown RBP16.72■□□□□ 0.27
SS18-225ENST00000585121 AEBP1Q8IUX7 1158 aa16.72■□□□□ 0.27
SS18-225ENST00000585121 SLC16A10Q8TF71 515 aa16.72■□□□□ 0.27
SS18-225ENST00000585121 DCAF8L1A6NGE4 600 aa16.71■□□□□ 0.27
SS18-225ENST00000585121 ERVV-2B6SEH9 535 aa16.71■□□□□ 0.27
SS18-225ENST00000585121 DCAF5Q96JK2 942 aa16.71■□□□□ 0.27
SS18-225ENST00000585121 PAPPAQ13219 1627 aa16.71■□□□□ 0.27
SS18-225ENST00000585121 CASZ1Q86V15 1759 aa16.7■□□□□ 0.26
SS18-225ENST00000585121 MSH5O43196 834 aa16.7■□□□□ 0.26
SS18-225ENST00000585121 PTGER2P43116 358 aa16.7■□□□□ 0.26
SS18-225ENST00000585121 PNPLA7Q6ZV29 1317 aa16.69■□□□□ 0.26
SS18-225ENST00000585121 KDRP35968 1356 aa16.68■□□□□ 0.26
SS18-225ENST00000585121 POLD1P28340 1107 aa16.68■□□□□ 0.26
SS18-225ENST00000585121 CABP4P57796 275 aa16.68■□□□□ 0.26
SS18-225ENST00000585121 FLAD1Q8NFF5 587 aa16.68■□□□□ 0.26
SS18-225ENST00000585121 LY75O60449 1722 aa16.67■□□□□ 0.26
SS18-225ENST00000585121 LOC102724428A0A0B4J2F2 783 aa16.67■□□□□ 0.26
SS18-225ENST00000585121 HMOX1P09601 288 aa16.67■□□□□ 0.26
SS18-225ENST00000585121 SIK1P57059 783 aa16.67■□□□□ 0.26
SS18-225ENST00000585121 AK7Q96M32 723 aa16.67■□□□□ 0.26
SS18-225ENST00000585121 CFAP53Q96M91 514 aa16.67■□□□□ 0.26
SS18-225ENST00000585121 ASAP1Q9ULH1 1129 aa16.67■□□□□ 0.26
SS18-225ENST00000585121 ARXQ96QS3 562 aa16.66■□□□□ 0.26
SS18-225ENST00000585121 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
SS18-225ENST00000585121 AKAP4Q5JQC9 854 aa16.65■□□□□ 0.26
SS18-225ENST00000585121 TOGARAM1Q9Y4F4 1720 aa16.65■□□□□ 0.26
SS18-225ENST00000585121 ATP6V1AP38606 617 aa16.65■□□□□ 0.26
SS18-225ENST00000585121 SGIP1Q9BQI5 828 aa16.65■□□□□ 0.26
SS18-225ENST00000585121 ATG3Q9NT62 314 aa16.65■□□□□ 0.26
SS18-225ENST00000585121 COL23A1Q86Y22 540 aaPredicted RBP16.64■□□□□ 0.25
SS18-225ENST00000585121 RBM42Q9BTD8 480 aaKnown RBP16.64■□□□□ 0.25
SS18-225ENST00000585121 ITGB4P16144 1822 aa16.64■□□□□ 0.25
SS18-225ENST00000585121 FHDC1Q9C0D6 1143 aaPredicted RBP16.63■□□□□ 0.25
SS18-225ENST00000585121 NUDCQ9Y266 331 aa16.63■□□□□ 0.25
SS18-225ENST00000585121 NFATC2IPQ8NCF5 419 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms