RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 THSD7AQ9UPZ6 1657 aa12.06□□□□□ -0.48
SS18-220ENST00000582092 RRS1Q15050 365 aaKnown RBP12.06□□□□□ -0.48
SS18-220ENST00000582092 CCDC27Q2M243 656 aa12.06□□□□□ -0.48
SS18-220ENST00000582092 CDCA7Q9BWT1 371 aaPredicted RBP12.06□□□□□ -0.48
SS18-220ENST00000582092 WDR17Q8IZU2 1322 aa12.06□□□□□ -0.48
SS18-220ENST00000582092 FBLN1P23142 703 aa12.05□□□□□ -0.48
SS18-220ENST00000582092 BAG6P46379 1132 aa12.05□□□□□ -0.48
SS18-220ENST00000582092 CALD1Q05682 793 aaKnown RBP12.05□□□□□ -0.48
SS18-220ENST00000582092 DUSP27Q5VZP5 1158 aa12.05□□□□□ -0.48
SS18-220ENST00000582092 FAM196AQ6ZSG2 479 aa12.05□□□□□ -0.48
SS18-220ENST00000582092 RGPD1P0DJD0 1748 aa12.05□□□□□ -0.48
SS18-220ENST00000582092 MAP2P11137 1827 aaKnown RBP12.04□□□□□ -0.48
SS18-220ENST00000582092 CANXP27824 592 aaKnown RBP12.04□□□□□ -0.48
SS18-220ENST00000582092 TMPOP42166 694 aaKnown RBP12.04□□□□□ -0.48
SS18-220ENST00000582092 RIPK4P57078 832 aa12.04□□□□□ -0.48
SS18-220ENST00000582092 LMOD3Q0VAK6 560 aa12.04□□□□□ -0.48
SS18-220ENST00000582092 CCDC136Q96JN2 1154 aa12.04□□□□□ -0.48
SS18-220ENST00000582092 NFAT5O94916 1531 aa12.04□□□□□ -0.48
SS18-220ENST00000582092 ZNF521Q96K83 1311 aa12.04□□□□□ -0.48
SS18-220ENST00000582092 PARP4Q9UKK3 1724 aaKnown RBP12.03□□□□□ -0.48
SS18-220ENST00000582092 KAT6BQ8WYB5 2073 aa12.03□□□□□ -0.48
SS18-220ENST00000582092 HMOX1P09601 288 aa12.03□□□□□ -0.48
SS18-220ENST00000582092 PRKAR2BP31323 418 aa12.03□□□□□ -0.48
SS18-220ENST00000582092 RNF123Q5XPI4 1314 aa12.03□□□□□ -0.48
SS18-220ENST00000582092 IL13P35225 146 aa12.02□□□□□ -0.49
SS18-220ENST00000582092 DDB1Q16531 1140 aa12.02□□□□□ -0.49
SS18-220ENST00000582092 CARD10Q9BWT7 1032 aa12.02□□□□□ -0.49
SS18-220ENST00000582092 AXIN2Q9Y2T1 843 aa12.02□□□□□ -0.49
SS18-220ENST00000582092 WNK3Q9BYP7 1800 aa12.02□□□□□ -0.49
SS18-220ENST00000582092 OVOS2A0A0J9YW53 1432 aa12.02□□□□□ -0.49
SS18-220ENST00000582092 OVOS2Q6IE36 1432 aa12.02□□□□□ -0.49
SS18-220ENST00000582092 FAM208AQ9UK61 1670 aaKnown RBP12.01□□□□□ -0.49
SS18-220ENST00000582092 PLEKHF1Q96S99 279 aa12.01□□□□□ -0.49
SS18-220ENST00000582092 NFE2L2Q16236 605 aa12□□□□□ -0.49
SS18-220ENST00000582092 TRMT2AQ8IZ69 625 aaKnown RBP12□□□□□ -0.49
SS18-220ENST00000582092 RSPH6AQ9H0K4 717 aa12□□□□□ -0.49
SS18-220ENST00000582092 NLRP2Q9NX02 1062 aa12□□□□□ -0.49
SS18-220ENST00000582092 COL3A1P02461 1466 aaPredicted RBP12□□□□□ -0.49
SS18-220ENST00000582092 EXOC5O00471 708 aa11.99□□□□□ -0.49
SS18-220ENST00000582092 IP6K1Q92551 441 aa11.99□□□□□ -0.49
SS18-220ENST00000582092 ERBB3P21860 1342 aa11.99□□□□□ -0.49
SS18-220ENST00000582092 IL16Q14005 1332 aa11.98□□□□□ -0.49
SS18-220ENST00000582092 CT47B1P0C2W7 299 aaPredicted RBP11.98□□□□□ -0.49
SS18-220ENST00000582092 EIF4A2Q14240 407 aaKnown RBP11.98□□□□□ -0.49
SS18-220ENST00000582092 FAM182BQ5T319 152 aa11.98□□□□□ -0.49
SS18-220ENST00000582092 ANKRD24Q8TF21 1146 aa11.98□□□□□ -0.49
SS18-220ENST00000582092 LAS1LQ9Y4W2 734 aaKnown RBP11.98□□□□□ -0.49
SS18-220ENST00000582092 OVOS2A0A0G2JMS6 1433 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 RTL1A6NKG5 1358 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 FLT4P35916 1363 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 PLIN1O60240 522 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 TRIM37O94972 964 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 HSP90AB2PQ58FF8 381 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 SULT6B1Q6IMI4 303 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 B4GALNT3Q6L9W6 998 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 DEFB132Q7Z7B7 95 aa11.97□□□□□ -0.49
SS18-220ENST00000582092 MAP3K19Q56UN5 1328 aa11.96□□□□□ -0.49
SS18-220ENST00000582092 MS4A1P11836 297 aa11.96□□□□□ -0.49
SS18-220ENST00000582092 IL2RBP14784 551 aa11.96□□□□□ -0.49
SS18-220ENST00000582092 LTV1Q96GA3 475 aaPredicted RBP11.96□□□□□ -0.49
SS18-220ENST00000582092 SPINK5Q9NQ38 1064 aaPredicted RBP11.96□□□□□ -0.49
SS18-220ENST00000582092 LRRC37A3O60309 1634 aa11.96□□□□□ -0.5
SS18-220ENST00000582092 EP400Q96L91 3159 aa11.95□□□□□ -0.5
SS18-220ENST00000582092 SBF2Q86WG5 1849 aa11.95□□□□□ -0.5
SS18-220ENST00000582092 KIF24Q5T7B8 1368 aa11.95□□□□□ -0.5
SS18-220ENST00000582092 TNS1Q9HBL0 1735 aaKnown RBP11.95□□□□□ -0.5
SS18-220ENST00000582092 APBA3O96018 575 aa11.95□□□□□ -0.5
SS18-220ENST00000582092 HOXC9P31274 260 aa11.95□□□□□ -0.5
SS18-220ENST00000582092 GNAI1P63096 354 aa11.95□□□□□ -0.5
SS18-220ENST00000582092 EXOC6Q8TAG9 804 aa11.95□□□□□ -0.5
SS18-220ENST00000582092 RTF1Q92541 710 aaKnown RBP11.94□□□□□ -0.5
SS18-220ENST00000582092 FRAT1Q92837 279 aaPredicted RBP11.94□□□□□ -0.5
SS18-220ENST00000582092 TRIM35Q9UPQ4 493 aa11.94□□□□□ -0.5
SS18-220ENST00000582092 DISP2A7MBM2 1401 aa11.94□□□□□ -0.5
SS18-220ENST00000582092 EN1Q05925 392 aaPredicted RBP11.93□□□□□ -0.5
SS18-220ENST00000582092 PHACTR3Q96KR7 559 aa11.93□□□□□ -0.5
SS18-220ENST00000582092 CRBNQ96SW2 442 aa11.92□□□□□ -0.5
SS18-220ENST00000582092 TNS2Q63HR2 1409 aa11.92□□□□□ -0.5
SS18-220ENST00000582092 RGPD2P0DJD1 1756 aa11.92□□□□□ -0.5
SS18-220ENST00000582092 BCAR3O75815 825 aa11.91□□□□□ -0.5
SS18-220ENST00000582092 EXOSC9Q06265 439 aaKnown RBP11.91□□□□□ -0.5
SS18-220ENST00000582092 PDE3AQ14432 1141 aa11.91□□□□□ -0.5
SS18-220ENST00000582092 NBPF14Q5TI25 921 aa11.91□□□□□ -0.5
SS18-220ENST00000582092 GAS2L2Q8NHY3 880 aa11.91□□□□□ -0.5
SS18-220ENST00000582092 TSR2Q969E8 191 aaKnown RBP11.91□□□□□ -0.5
SS18-220ENST00000582092 FANCIQ9NVI1 1328 aa11.9□□□□□ -0.5
SS18-220ENST00000582092 BCL9O00512 1426 aa11.9□□□□□ -0.5
SS18-220ENST00000582092 IPO8O15397 1037 aaKnown RBP11.9□□□□□ -0.5
SS18-220ENST00000582092 RARSP54136 660 aaKnown RBP11.9□□□□□ -0.5
SS18-220ENST00000582092 MARCH10Q8NA82 808 aaPredicted RBP11.9□□□□□ -0.5
SS18-220ENST00000582092 RAPGEF4Q8WZA2 1011 aa11.9□□□□□ -0.5
SS18-220ENST00000582092 BCL11BQ9C0K0 894 aaPredicted RBP11.9□□□□□ -0.5
SS18-220ENST00000582092 PEAK1Q9H792 1746 aa11.9□□□□□ -0.5
SS18-220ENST00000582092 SMC4Q9NTJ3 1288 aa11.9□□□□□ -0.5
SS18-220ENST00000582092 IFT57Q9NWB7 429 aa11.9□□□□□ -0.5
SS18-220ENST00000582092 EZH2Q15910 746 aaKnown RBP11.89□□□□□ -0.51
SS18-220ENST00000582092 AEBP1Q8IUX7 1158 aa11.89□□□□□ -0.51
SS18-220ENST00000582092 FTSJ3Q8IY81 847 aaKnown RBP11.89□□□□□ -0.51
SS18-220ENST00000582092 ZNF428Q96B54 188 aa11.89□□□□□ -0.51
SS18-220ENST00000582092 EYA1Q99502 592 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms