RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PSDA5PKW4 1024 aaPredicted RBP32.69■■■□□ 2.82
SHMT1-206ENST00000579558 PLSCR1O15162 318 aa32.69■■■□□ 2.82
SHMT1-206ENST00000579558 ZCRB1Q8TBF4 217 aaKnown RBP32.69■■■□□ 2.82
SHMT1-206ENST00000579558 KCNQ2O43526 872 aa32.68■■■□□ 2.82
SHMT1-206ENST00000579558 TATP17735 454 aaPredicted RBP32.67■■■□□ 2.82
SHMT1-206ENST00000579558 SHANK3Q9BYB0 1731 aa32.67■■■□□ 2.82
SHMT1-206ENST00000579558 AMER1Q5JTC6 1135 aaPredicted RBP32.66■■■□□ 2.82
SHMT1-206ENST00000579558 R3HDM1Q15032 1099 aaKnown RBP32.64■■■□□ 2.82
SHMT1-206ENST00000579558 KAT6BQ8WYB5 2073 aa32.64■■■□□ 2.82
SHMT1-206ENST00000579558 NCAPD2Q15021 1401 aa32.62■■■□□ 2.81
SHMT1-206ENST00000579558 NBPF14Q5TI25 921 aa32.61■■■□□ 2.81
SHMT1-206ENST00000579558 EYA1Q99502 592 aa32.61■■■□□ 2.81
SHMT1-206ENST00000579558 PER1O15534 1290 aaPredicted RBP32.6■■■□□ 2.81
SHMT1-206ENST00000579558 EIF4A2Q14240 407 aaKnown RBP32.6■■■□□ 2.81
SHMT1-206ENST00000579558 BTAF1O14981 1849 aa32.58■■■□□ 2.81
SHMT1-206ENST00000579558 DOT1LQ8TEK3 1739 aa32.57■■■□□ 2.81
SHMT1-206ENST00000579558 PCDH11XQ9BZA7 1347 aa32.55■■■□□ 2.8
SHMT1-206ENST00000579558 PCDH11YQ9BZA8 1340 aa32.55■■■□□ 2.8
SHMT1-206ENST00000579558 PROM2Q8N271 834 aa32.55■■■□□ 2.8
SHMT1-206ENST00000579558 TXNRD1Q16881 649 aa32.54■■■□□ 2.8
SHMT1-206ENST00000579558 CC2D1BQ5T0F9 858 aaKnown RBP32.54■■■□□ 2.8
SHMT1-206ENST00000579558 PKD1L3Q7Z443 1732 aa32.54■■■□□ 2.8
SHMT1-206ENST00000579558 SYTL4Q96C24 671 aaPredicted RBP32.53■■■□□ 2.8
SHMT1-206ENST00000579558 PRIM1P49642 420 aaKnown RBP32.52■■■□□ 2.8
SHMT1-206ENST00000579558 IGSF1Q8N6C5 1336 aa32.5■■■□□ 2.79
SHMT1-206ENST00000579558 NPC1L1Q9UHC9 1359 aa32.48■■■□□ 2.79
SHMT1-206ENST00000579558 SPG7Q9UQ90 795 aa32.48■■■□□ 2.79
SHMT1-206ENST00000579558 CYP27B1O15528 508 aa32.47■■■□□ 2.79
SHMT1-206ENST00000579558 CNGB1Q14028 1251 aaPredicted RBP32.47■■■□□ 2.79
SHMT1-206ENST00000579558 ANO8Q9HCE9 1232 aaPredicted RBP32.47■■■□□ 2.79
SHMT1-206ENST00000579558 LRP5O75197 1615 aa32.47■■■□□ 2.79
SHMT1-206ENST00000579558 MTHFSP49914 203 aa32.44■■■□□ 2.78
SHMT1-206ENST00000579558 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.44■■■□□ 2.78
SHMT1-206ENST00000579558 STK32BQ9NY57 414 aa32.4■■■□□ 2.78
SHMT1-206ENST00000579558 PLEKHG2Q9H7P9 1386 aa32.4■■■□□ 2.78
SHMT1-206ENST00000579558 IL13P35225 146 aa32.39■■■□□ 2.78
SHMT1-206ENST00000579558 TOGARAM1Q9Y4F4 1720 aa32.39■■■□□ 2.78
SHMT1-206ENST00000579558 NKX1-1Q15270 411 aaPredicted RBP32.37■■■□□ 2.77
SHMT1-206ENST00000579558 PAPPAQ13219 1627 aa32.37■■■□□ 2.77
SHMT1-206ENST00000579558 AEBP1Q8IUX7 1158 aa32.36■■■□□ 2.77
SHMT1-206ENST00000579558 IFNL2Q8IZJ0 200 aa32.36■■■□□ 2.77
SHMT1-206ENST00000579558 LRRC4BQ9NT99 713 aa32.36■■■□□ 2.77
SHMT1-206ENST00000579558 LY75O60449 1722 aa32.35■■■□□ 2.77
SHMT1-206ENST00000579558 PHKG2P15735 406 aa32.35■■■□□ 2.77
SHMT1-206ENST00000579558 SLC15A2Q16348 729 aa32.35■■■□□ 2.77
SHMT1-206ENST00000579558 SLC27A3Q5K4L6 730 aa32.35■■■□□ 2.77
SHMT1-206ENST00000579558 SULT6B1Q6IMI4 303 aa32.35■■■□□ 2.77
SHMT1-206ENST00000579558 MPRIPQ6WCQ1 1025 aa32.34■■■□□ 2.77
SHMT1-206ENST00000579558 ITGB4P16144 1822 aa32.34■■■□□ 2.77
SHMT1-206ENST00000579558 PLEKHO1Q53GL0 409 aaPredicted RBP32.33■■■□□ 2.77
SHMT1-206ENST00000579558 CASZ1Q86V15 1759 aa32.31■■■□□ 2.76
SHMT1-206ENST00000579558 KDRP35968 1356 aa32.31■■■□□ 2.76
SHMT1-206ENST00000579558 AMOTQ4VCS5 1084 aa32.3■■■□□ 2.76
SHMT1-206ENST00000579558 DIAPH1O60610 1272 aaKnown RBP32.29■■■□□ 2.76
SHMT1-206ENST00000579558 KCNQ4P56696 695 aa32.29■■■□□ 2.76
SHMT1-206ENST00000579558 CCNL1Q9UK58 526 aaPredicted RBP32.28■■■□□ 2.76
SHMT1-206ENST00000579558 ZNF530Q6P9A1 599 aaPredicted RBP32.27■■■□□ 2.76
SHMT1-206ENST00000579558 PDGFDQ9GZP0 370 aaPredicted RBP32.27■■■□□ 2.76
SHMT1-206ENST00000579558 ZNF827Q17R98 1081 aa32.26■■■□□ 2.75
SHMT1-206ENST00000579558 PIGBQ92521 554 aa32.26■■■□□ 2.75
SHMT1-206ENST00000579558 SPON1Q9HCB6 807 aa32.26■■■□□ 2.75
SHMT1-206ENST00000579558 COL3A1P02461 1466 aaPredicted RBP32.25■■■□□ 2.75
SHMT1-206ENST00000579558 PALLDQ8WX93 1383 aa32.25■■■□□ 2.75
SHMT1-206ENST00000579558 HSP90AB1P08238 724 aaKnown RBP32.24■■■□□ 2.75
SHMT1-206ENST00000579558 TMOD3Q9NYL9 352 aa32.24■■■□□ 2.75
SHMT1-206ENST00000579558 HMOX1P09601 288 aa32.23■■■□□ 2.75
SHMT1-206ENST00000579558 SMARCC1Q92922 1105 aaPredicted RBP32.23■■■□□ 2.75
SHMT1-206ENST00000579558 AKT1S1Q96B36 256 aa32.23■■■□□ 2.75
SHMT1-206ENST00000579558 C1orf141Q5JVX7 400 aa32.21■■■□□ 2.75
SHMT1-206ENST00000579558 DCAF5Q96JK2 942 aa32.21■■■□□ 2.75
SHMT1-206ENST00000579558 ZBTB7AO95365 584 aa32.2■■■□□ 2.75
SHMT1-206ENST00000579558 CFAP53Q96M91 514 aa32.18■■■□□ 2.74
SHMT1-206ENST00000579558 KDM6AO15550 1401 aaPredicted RBP32.17■■■□□ 2.74
SHMT1-206ENST00000579558 ERVV-2B6SEH9 535 aa32.17■■■□□ 2.74
SHMT1-206ENST00000579558 U2SURPO15042 1029 aaKnown RBP32.17■■■□□ 2.74
SHMT1-206ENST00000579558 PPP2R1AP30153 589 aa32.17■■■□□ 2.74
SHMT1-206ENST00000579558 C5P01031 1676 aa32.17■■■□□ 2.74
SHMT1-206ENST00000579558 QSER1Q2KHR3 1735 aa32.17■■■□□ 2.74
SHMT1-206ENST00000579558 TFCP2L1Q9NZI6 479 aa32.16■■■□□ 2.74
SHMT1-206ENST00000579558 TUBGCP6Q96RT7 1819 aa32.15■■■□□ 2.74
SHMT1-206ENST00000579558 PPP1R1BQ9UD71 204 aaPredicted RBP32.14■■■□□ 2.74
SHMT1-206ENST00000579558 ASAP1Q9ULH1 1129 aa32.14■■■□□ 2.74
SHMT1-206ENST00000579558 ATF5Q9Y2D1 282 aaPredicted RBP32.14■■■□□ 2.74
SHMT1-206ENST00000579558 TAF1LQ8IZX4 1826 aa32.13■■■□□ 2.73
SHMT1-206ENST00000579558 HMGB2P26583 209 aaKnown RBP32.12■■■□□ 2.73
SHMT1-206ENST00000579558 MTFR1LQ9H019 292 aa32.12■■■□□ 2.73
SHMT1-206ENST00000579558 PNPLA7Q6ZV29 1317 aa32.11■■■□□ 2.73
SHMT1-206ENST00000579558 CABP4P57796 275 aa32.11■■■□□ 2.73
SHMT1-206ENST00000579558 AKAP4Q5JQC9 854 aa32.11■■■□□ 2.73
SHMT1-206ENST00000579558 ATG3Q9NT62 314 aa32.1■■■□□ 2.73
SHMT1-206ENST00000579558 LOC102724428A0A0B4J2F2 783 aa32.09■■■□□ 2.73
SHMT1-206ENST00000579558 SIK1P57059 783 aa32.09■■■□□ 2.73
SHMT1-206ENST00000579558 SCN11AQ9UI33 1791 aa32.08■■■□□ 2.73
SHMT1-206ENST00000579558 MTHFSDQ2M296 383 aaKnown RBP32.07■■■□□ 2.72
SHMT1-206ENST00000579558 NUDCQ9Y266 331 aa32.07■■■□□ 2.72
SHMT1-206ENST00000579558 C4BP0C0L5 1744 aa32.06■■■□□ 2.72
SHMT1-206ENST00000579558 PTGER2P43116 358 aa32.06■■■□□ 2.72
SHMT1-206ENST00000579558 ZEB1P37275 1124 aaPredicted RBP32.04■■■□□ 2.72
SHMT1-206ENST00000579558 DDX10Q13206 875 aaKnown RBP32.04■■■□□ 2.72
SHMT1-206ENST00000579558 SLC16A10Q8TF71 515 aa32.04■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms