RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 AMER1Q5JTC6 1135 aaPredicted RBP20.3■□□□□ 0.84
SS18-212ENST00000579061 PTF1AQ7RTS3 328 aa20.3■□□□□ 0.84
SS18-212ENST00000579061 MORC1Q86VD1 984 aa20.3■□□□□ 0.84
SS18-212ENST00000579061 USHBP1Q8N6Y0 703 aa20.3■□□□□ 0.84
SS18-212ENST00000579061 PER1O15534 1290 aaPredicted RBP20.29■□□□□ 0.84
SS18-212ENST00000579061 DDX54Q8TDD1 881 aaKnown RBP20.29■□□□□ 0.84
SS18-212ENST00000579061 KCNQ2O43526 872 aa20.28■□□□□ 0.84
SS18-212ENST00000579061 NBPF14Q5TI25 921 aa20.28■□□□□ 0.84
SS18-212ENST00000579061 BTAF1O14981 1849 aa20.27■□□□□ 0.84
SS18-212ENST00000579061 ACSBG1Q96GR2 724 aa20.27■□□□□ 0.84
SS18-212ENST00000579061 PSDA5PKW4 1024 aaPredicted RBP20.26■□□□□ 0.83
SS18-212ENST00000579061 EYA1Q99502 592 aa20.26■□□□□ 0.83
SS18-212ENST00000579061 PKD1L3Q7Z443 1732 aa20.25■□□□□ 0.83
SS18-212ENST00000579061 EIF4A2Q14240 407 aaKnown RBP20.25■□□□□ 0.83
SS18-212ENST00000579061 R3HDM1Q15032 1099 aaKnown RBP20.25■□□□□ 0.83
SS18-212ENST00000579061 PLEKHG2Q9H7P9 1386 aa20.24■□□□□ 0.83
SS18-212ENST00000579061 NPC1L1Q9UHC9 1359 aa20.24■□□□□ 0.83
SS18-212ENST00000579061 DOT1LQ8TEK3 1739 aa20.24■□□□□ 0.83
SS18-212ENST00000579061 PCDH11XQ9BZA7 1347 aa20.24■□□□□ 0.83
SS18-212ENST00000579061 PCDH11YQ9BZA8 1340 aa20.24■□□□□ 0.83
SS18-212ENST00000579061 SRCAPQ6ZRS2 3230 aa20.23■□□□□ 0.83
SS18-212ENST00000579061 PROM2Q8N271 834 aa20.23■□□□□ 0.83
SS18-212ENST00000579061 LRP5O75197 1615 aa20.23■□□□□ 0.83
SS18-212ENST00000579061 TXNRD1Q16881 649 aa20.22■□□□□ 0.83
SS18-212ENST00000579061 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.21■□□□□ 0.833e-7■■□□□ 13.5
SS18-212ENST00000579061 IGSF1Q8N6C5 1336 aa20.21■□□□□ 0.83
SS18-212ENST00000579061 SPG7Q9UQ90 795 aa20.19■□□□□ 0.82
SS18-212ENST00000579061 CYP27B1O15528 508 aa20.18■□□□□ 0.82
SS18-212ENST00000579061 PRIM1P49642 420 aaKnown RBP20.18■□□□□ 0.82
SS18-212ENST00000579061 CC2D1BQ5T0F9 858 aaKnown RBP20.17■□□□□ 0.82
SS18-212ENST00000579061 NKX1-1Q15270 411 aaPredicted RBP20.16■□□□□ 0.82
SS18-212ENST00000579061 SYTL4Q96C24 671 aaPredicted RBP20.16■□□□□ 0.82
SS18-212ENST00000579061 ANO8Q9HCE9 1232 aaPredicted RBP20.15■□□□□ 0.82
SS18-212ENST00000579061 LY75O60449 1722 aa20.15■□□□□ 0.82
SS18-212ENST00000579061 ITGB4P16144 1822 aa20.14■□□□□ 0.81
SS18-212ENST00000579061 MTHFSP49914 203 aa20.14■□□□□ 0.81
SS18-212ENST00000579061 SLC27A3Q5K4L6 730 aa20.14■□□□□ 0.81
SS18-212ENST00000579061 PAPPAQ13219 1627 aa20.13■□□□□ 0.81
SS18-212ENST00000579061 IL13P35225 146 aa20.13■□□□□ 0.81
SS18-212ENST00000579061 STK32BQ9NY57 414 aa20.13■□□□□ 0.81
SS18-212ENST00000579061 TOGARAM1Q9Y4F4 1720 aa20.13■□□□□ 0.81
SS18-212ENST00000579061 SLC15A2Q16348 729 aa20.12■□□□□ 0.81
SS18-212ENST00000579061 IFNL2Q8IZJ0 200 aa20.12■□□□□ 0.81
SS18-212ENST00000579061 CASZ1Q86V15 1759 aa20.11■□□□□ 0.81
SS18-212ENST00000579061 KDRP35968 1356 aa20.11■□□□□ 0.81
SS18-212ENST00000579061 PHKG2P15735 406 aa20.1■□□□□ 0.81
SS18-212ENST00000579061 AMOTQ4VCS5 1084 aa20.1■□□□□ 0.81
SS18-212ENST00000579061 PLEKHO1Q53GL0 409 aaPredicted RBP20.1■□□□□ 0.81
SS18-212ENST00000579061 LRRC4BQ9NT99 713 aa20.1■□□□□ 0.81
SS18-212ENST00000579061 HMGB2P26583 209 aaKnown RBP20.08■□□□□ 0.81
SS18-212ENST00000579061 SULT6B1Q6IMI4 303 aa20.08■□□□□ 0.81
SS18-212ENST00000579061 MPRIPQ6WCQ1 1025 aa20.07■□□□□ 0.8
SS18-212ENST00000579061 AEBP1Q8IUX7 1158 aa20.07■□□□□ 0.8
SS18-212ENST00000579061 QSER1Q2KHR3 1735 aa20.07■□□□□ 0.8
SS18-212ENST00000579061 DIAPH1O60610 1272 aaKnown RBP20.06■□□□□ 0.8
SS18-212ENST00000579061 HSP90AB1P08238 724 aaKnown RBP20.06■□□□□ 0.8
SS18-212ENST00000579061 SMARCC1Q92922 1105 aaPredicted RBP20.06■□□□□ 0.8
SS18-212ENST00000579061 SPON1Q9HCB6 807 aa20.06■□□□□ 0.8
SS18-212ENST00000579061 COL3A1P02461 1466 aaPredicted RBP20.05■□□□□ 0.8
SS18-212ENST00000579061 PIGBQ92521 554 aa20.04■□□□□ 0.8
SS18-212ENST00000579061 AKT1S1Q96B36 256 aa20.04■□□□□ 0.8
SS18-212ENST00000579061 CCNL1Q9UK58 526 aaPredicted RBP20.04■□□□□ 0.8
SS18-212ENST00000579061 ZNF530Q6P9A1 599 aaPredicted RBP20.03■□□□□ 0.8
SS18-212ENST00000579061 DCAF5Q96JK2 942 aa20.03■□□□□ 0.8
SS18-212ENST00000579061 TMOD3Q9NYL9 352 aa20.03■□□□□ 0.8
SS18-212ENST00000579061 PALLDQ8WX93 1383 aa20.03■□□□□ 0.8
SS18-212ENST00000579061 TAF1LQ8IZX4 1826 aa20.02■□□□□ 0.8
SS18-212ENST00000579061 ERVV-2B6SEH9 535 aa20.02■□□□□ 0.8
SS18-212ENST00000579061 CNGB1Q14028 1251 aaPredicted RBP20.02■□□□□ 0.8
SS18-212ENST00000579061 ZNF827Q17R98 1081 aa20.02■□□□□ 0.8
SS18-212ENST00000579061 C5P01031 1676 aa20■□□□□ 0.79
SS18-212ENST00000579061 TUBGCP6Q96RT7 1819 aa20■□□□□ 0.79
SS18-212ENST00000579061 C1orf141Q5JVX7 400 aa20■□□□□ 0.79
SS18-212ENST00000579061 PDGFDQ9GZP0 370 aaPredicted RBP20■□□□□ 0.79
SS18-212ENST00000579061 KCNQ4P56696 695 aa19.99■□□□□ 0.79
SS18-212ENST00000579061 CFAP53Q96M91 514 aa19.99■□□□□ 0.79
SS18-212ENST00000579061 KDM6AO15550 1401 aaPredicted RBP19.99■□□□□ 0.79
SS18-212ENST00000579061 SCN11AQ9UI33 1791 aa19.98■□□□□ 0.79
SS18-212ENST00000579061 HMOX1P09601 288 aa19.98■□□□□ 0.79
SS18-212ENST00000579061 PPP2R1AP30153 589 aa19.98■□□□□ 0.79
SS18-212ENST00000579061 MTFR1LQ9H019 292 aa19.98■□□□□ 0.79
SS18-212ENST00000579061 SLC16A10Q8TF71 515 aa19.97■□□□□ 0.79
SS18-212ENST00000579061 TFCP2L1Q9NZI6 479 aa19.97■□□□□ 0.79
SS18-212ENST00000579061 ZBTB7AO95365 584 aa19.96■□□□□ 0.79
SS18-212ENST00000579061 AKAP4Q5JQC9 854 aa19.96■□□□□ 0.79
SS18-212ENST00000579061 VIRMAQ69YN4 1812 aaKnown RBP19.96■□□□□ 0.79
SS18-212ENST00000579061 ASAP1Q9ULH1 1129 aa19.95■□□□□ 0.78
SS18-212ENST00000579061 PNPLA7Q6ZV29 1317 aa19.95■□□□□ 0.78
SS18-212ENST00000579061 ZNF831Q5JPB2 1677 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 C4BP0C0L5 1744 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 LOC102724428A0A0B4J2F2 783 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 U2SURPO15042 1029 aaKnown RBP19.94■□□□□ 0.78
SS18-212ENST00000579061 PTGER2P43116 358 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 SIK1P57059 783 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 CABP4P57796 275 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 ATG3Q9NT62 314 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 PPP1R1BQ9UD71 204 aaPredicted RBP19.94■□□□□ 0.78
SS18-212ENST00000579061 NUDCQ9Y266 331 aa19.94■□□□□ 0.78
SS18-212ENST00000579061 COL24A1Q17RW2 1714 aa19.93■□□□□ 0.78
SS18-212ENST00000579061 ZEB1P37275 1124 aaPredicted RBP19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms