RNA–Protein interactions for RNA: ENST00000576921.1

HCFC1R1-209, Transcript of host cell factor C1 regulator 1, human

TSL 1 (best)

Gene HCFC1R1, Length 1,199 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCFC1R1-209	ENST00000576921	KCNQ2	O43526	872 aa		29.03	■■■□□ 2.24
HCFC1R1-209	ENST00000576921	NSD2	O96028	1365 aa		29.02	■■■□□ 2.24
HCFC1R1-209	ENST00000576921	PLSCR1	O15162	318 aa		29.02	■■■□□ 2.24
HCFC1R1-209	ENST00000576921	RAPGEF4	Q8WZA2	1011 aa		29.01	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	LRP5	O75197	1615 aa		29.01	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	ZCRB1	Q8TBF4	217 aa	Known RBP	29	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	POLK	Q9UBT6	870 aa		29	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	NBPF14	Q5TI25	921 aa		28.99	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	KNSTRN	Q9Y448	316 aa		28.99	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	WASHC2A	Q641Q2	1341 aa		28.97	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	TAT	P17735	454 aa	Predicted RBP	28.96	■■■□□ 2.23
HCFC1R1-209	ENST00000576921	MORC1	Q86VD1	984 aa		28.94	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	PKD1L3	Q7Z443	1732 aa		28.94	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	TXNRD1	Q16881	649 aa		28.92	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	SYTL4	Q96C24	671 aa	Predicted RBP	28.92	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	NCAPD2	Q15021	1401 aa		28.91	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	PROM2	Q8N271	834 aa		28.9	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	EYA1	Q99502	592 aa		28.89	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	ANO8	Q9HCE9	1232 aa	Predicted RBP	28.89	■■■□□ 2.22
HCFC1R1-209	ENST00000576921	PCDH11X	Q9BZA7	1347 aa		28.89	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	PCDH11Y	Q9BZA8	1340 aa		28.89	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	EIF4A2	Q14240	407 aa	Known RBP	28.88	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	PRIM1	P49642	420 aa	Known RBP	28.86	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	AMER1	Q5JTC6	1135 aa	Predicted RBP	28.86	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	TOGARAM1	Q9Y4F4	1720 aa		28.84	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	PAPPA	Q13219	1627 aa		28.83	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	LY75	O60449	1722 aa		28.83	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	CASZ1	Q86V15	1759 aa		28.83	■■■□□ 2.21
HCFC1R1-209	ENST00000576921	ITGB4	P16144	1822 aa		28.82	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	CC2D1B	Q5T0F9	858 aa	Known RBP	28.81	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	STK32B	Q9NY57	414 aa		28.81	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	CYP27B1	O15528	508 aa		28.79	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	CNGB1	Q14028	1251 aa	Predicted RBP	28.79	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	SPG7	Q9UQ90	795 aa		28.79	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	PER1	O15534	1290 aa	Predicted RBP	28.78	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	IGSF1	Q8N6C5	1336 aa		28.77	■■■□□ 2.2
HCFC1R1-209	ENST00000576921	SLC15A2	Q16348	729 aa		28.75	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	LRRC4B	Q9NT99	713 aa		28.75	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	SLC27A3	Q5K4L6	730 aa		28.72	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	PDGFD	Q9GZP0	370 aa	Predicted RBP	28.72	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	KCNQ4	P56696	695 aa		28.71	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	MPRIP	Q6WCQ1	1025 aa		28.71	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	28.71	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	TUBGCP6	Q96RT7	1819 aa		28.71	■■■□□ 2.19
HCFC1R1-209	ENST00000576921	MTHFS	P49914	203 aa		28.7	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	SPON1	Q9HCB6	807 aa		28.7	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	ZNF827	Q17R98	1081 aa		28.69	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	C5	P01031	1676 aa		28.68	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	PLEKHG2	Q9H7P9	1386 aa		28.68	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	NPC1L1	Q9UHC9	1359 aa		28.68	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	AEBP1	Q8IUX7	1158 aa		28.68	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	IFNL2	Q8IZJ0	200 aa		28.68	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	QSER1	Q2KHR3	1735 aa		28.68	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	ZBTB7A	O95365	584 aa		28.67	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	PHKG2	P15735	406 aa		28.67	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	CCNL1	Q9UK58	526 aa	Predicted RBP	28.67	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	IL13	P35225	146 aa		28.66	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	NKX1-1	Q15270	411 aa	Predicted RBP	28.66	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	PALLD	Q8WX93	1383 aa		28.65	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	TAF1L	Q8IZX4	1826 aa		28.65	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	SULT6B1	Q6IMI4	303 aa		28.65	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	PPP1R1B	Q9UD71	204 aa	Predicted RBP	28.65	■■■□□ 2.18
HCFC1R1-209	ENST00000576921	PLEKHO1	Q53GL0	409 aa	Predicted RBP	28.63	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	AKT1S1	Q96B36	256 aa		28.62	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	ZNF530	Q6P9A1	599 aa	Predicted RBP	28.61	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	PIGB	Q92521	554 aa		28.61	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	TMOD3	Q9NYL9	352 aa		28.61	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	ATF5	Q9Y2D1	282 aa	Predicted RBP	28.61	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	KDR	P35968	1356 aa		28.61	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	AMOT	Q4VCS5	1084 aa		28.59	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	TFCP2L1	Q9NZI6	479 aa		28.59	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	DIAPH1	O60610	1272 aa	Known RBP	28.58	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	SMARCC1	Q92922	1105 aa	Predicted RBP	28.58	■■■□□ 2.17
HCFC1R1-209	ENST00000576921	COL3A1	P02461	1466 aa	Predicted RBP	28.57	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	HMOX1	P09601	288 aa		28.56	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	C1orf141	Q5JVX7	400 aa		28.56	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	VIRMA	Q69YN4	1812 aa	Known RBP	28.56	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	MTFR1L	Q9H019	292 aa		28.56	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	KDM6A	O15550	1401 aa	Predicted RBP	28.55	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	HSP90AB1	P08238	724 aa	Known RBP	28.55	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	C4B	P0C0L5	1744 aa		28.55	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	PNPLA7	Q6ZV29	1317 aa		28.54	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	SCN11A	Q9UI33	1791 aa		28.53	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	DCAF5	Q96JK2	942 aa		28.53	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	PTGER2	P43116	358 aa		28.52	■■■□□ 2.16
HCFC1R1-209	ENST00000576921	ASAP1	Q9ULH1	1129 aa		28.51	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	ERVV-2	B6SEH9	535 aa		28.49	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	U2SURP	O15042	1029 aa	Known RBP	28.49	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	LOC102724428	A0A0B4J2F2	783 aa		28.48	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	MSH5	O43196	834 aa		28.48	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	SIK1	P57059	783 aa		28.48	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	UBR3	Q6ZT12	1888 aa		28.47	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	CABP4	P57796	275 aa		28.47	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	ATG3	Q9NT62	314 aa		28.47	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	HMGB2	P26583	209 aa	Known RBP	28.46	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	CFAP53	Q96M91	514 aa		28.46	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	COL24A1	Q17RW2	1714 aa		28.46	■■■□□ 2.15
HCFC1R1-209	ENST00000576921	SLC16A10	Q8TF71	515 aa		28.45	■■■□□ 2.14
HCFC1R1-209	ENST00000576921	AK7	Q96M32	723 aa		28.45	■■■□□ 2.14
HCFC1R1-209	ENST00000576921	SGIP1	Q9BQI5	828 aa		28.44	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms