RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 EYA1Q99502 592 aa20.69■□□□□ 0.9
SMG6-220ENST00000576218 PCDH11XQ9BZA7 1347 aa20.69■□□□□ 0.9
SMG6-220ENST00000576218 PCDH11YQ9BZA8 1340 aa20.69■□□□□ 0.9
SMG6-220ENST00000576218 PER1O15534 1290 aaPredicted RBP20.68■□□□□ 0.9
SMG6-220ENST00000576218 NBPF14Q5TI25 921 aa20.68■□□□□ 0.9
SMG6-220ENST00000576218 KAT6BQ8WYB5 2073 aa20.68■□□□□ 0.9
SMG6-220ENST00000576218 PSDA5PKW4 1024 aaPredicted RBP20.67■□□□□ 0.9
SMG6-220ENST00000576218 KCNQ2O43526 872 aa20.67■□□□□ 0.9
SMG6-220ENST00000576218 PTF1AQ7RTS3 328 aa20.67■□□□□ 0.9
SMG6-220ENST00000576218 SPG7Q9UQ90 795 aa20.66■□□□□ 0.9
SMG6-220ENST00000576218 NHSQ6T4R5 1651 aa20.66■□□□□ 0.9
SMG6-220ENST00000576218 PLSCR1O15162 318 aa20.65■□□□□ 0.9
SMG6-220ENST00000576218 R3HDM1Q15032 1099 aaKnown RBP20.64■□□□□ 0.89
SMG6-220ENST00000576218 NPC1L1Q9UHC9 1359 aa20.63■□□□□ 0.89
SMG6-220ENST00000576218 ZEB1P37275 1124 aaPredicted RBP20.63■□□□□ 0.89
SMG6-220ENST00000576218 MTHFSP49914 203 aa20.63■□□□□ 0.89
SMG6-220ENST00000576218 RREB1Q92766 1687 aa20.62■□□□□ 0.89
SMG6-220ENST00000576218 RGPD3A6NKT7 1758 aaPredicted RBP20.62■□□□□ 0.89
SMG6-220ENST00000576218 RGPD4Q7Z3J3 1758 aa20.62■□□□□ 0.89
SMG6-220ENST00000576218 IGSF1Q8N6C5 1336 aa20.61■□□□□ 0.89
SMG6-220ENST00000576218 PRIM1P49642 420 aaKnown RBP20.61■□□□□ 0.89
SMG6-220ENST00000576218 DOT1LQ8TEK3 1739 aa20.61■□□□□ 0.89
SMG6-220ENST00000576218 SHANK3Q9BYB0 1731 aa20.61■□□□□ 0.89
SMG6-220ENST00000576218 NCAPD2Q15021 1401 aa20.61■□□□□ 0.89
SMG6-220ENST00000576218 NUP188Q5SRE5 1749 aa20.6■□□□□ 0.89
SMG6-220ENST00000576218 TXNRD1Q16881 649 aa20.59■□□□□ 0.89
SMG6-220ENST00000576218 BTAF1O14981 1849 aa20.58■□□□□ 0.89
SMG6-220ENST00000576218 CYP27B1O15528 508 aa20.57■□□□□ 0.88
SMG6-220ENST00000576218 DIAPH1O60610 1272 aaKnown RBP20.57■□□□□ 0.88
SMG6-220ENST00000576218 PLEKHO1Q53GL0 409 aaPredicted RBP20.57■□□□□ 0.88
SMG6-220ENST00000576218 SULT6B1Q6IMI4 303 aa20.57■□□□□ 0.88
SMG6-220ENST00000576218 PKD1L3Q7Z443 1732 aa20.57■□□□□ 0.88
SMG6-220ENST00000576218 CFAP53Q96M91 514 aa20.57■□□□□ 0.88
SMG6-220ENST00000576218 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.57■□□□□ 0.88
SMG6-220ENST00000576218 IL13P35225 146 aa20.56■□□□□ 0.88
SMG6-220ENST00000576218 IFNL2Q8IZJ0 200 aa20.56■□□□□ 0.88
SMG6-220ENST00000576218 STK32BQ9NY57 414 aa20.56■□□□□ 0.88
SMG6-220ENST00000576218 MPRIPQ6WCQ1 1025 aa20.55■□□□□ 0.88
SMG6-220ENST00000576218 AEBP1Q8IUX7 1158 aa20.55■□□□□ 0.88
SMG6-220ENST00000576218 AMOTQ4VCS5 1084 aa20.54■□□□□ 0.88
SMG6-220ENST00000576218 U2SURPO15042 1029 aaKnown RBP20.53■□□□□ 0.88
SMG6-220ENST00000576218 C1orf141Q5JVX7 400 aa20.53■□□□□ 0.88
SMG6-220ENST00000576218 ZNF530Q6P9A1 599 aaPredicted RBP20.53■□□□□ 0.88
SMG6-220ENST00000576218 PLEKHG2Q9H7P9 1386 aa20.53■□□□□ 0.88
SMG6-220ENST00000576218 HMOX1P09601 288 aa20.52■□□□□ 0.88
SMG6-220ENST00000576218 PHKG2P15735 406 aa20.52■□□□□ 0.88
SMG6-220ENST00000576218 PROM2Q8N271 834 aa20.52■□□□□ 0.88
SMG6-220ENST00000576218 HSP90AB1P08238 724 aaKnown RBP20.51■□□□□ 0.87
SMG6-220ENST00000576218 SLC27A3Q5K4L6 730 aa20.5■□□□□ 0.87
SMG6-220ENST00000576218 ANO8Q9HCE9 1232 aaPredicted RBP20.5■□□□□ 0.87
SMG6-220ENST00000576218 TMOD3Q9NYL9 352 aa20.5■□□□□ 0.87
SMG6-220ENST00000576218 DDX10Q13206 875 aaKnown RBP20.49■□□□□ 0.87
SMG6-220ENST00000576218 CCNL1Q9UK58 526 aaPredicted RBP20.49■□□□□ 0.87
SMG6-220ENST00000576218 PPP2R1AP30153 589 aa20.48■□□□□ 0.87
SMG6-220ENST00000576218 NKX1-1Q15270 411 aaPredicted RBP20.48■□□□□ 0.87
SMG6-220ENST00000576218 NUDCQ9Y266 331 aa20.48■□□□□ 0.87
SMG6-220ENST00000576218 KDRP35968 1356 aa20.47■□□□□ 0.87
SMG6-220ENST00000576218 SMARCC1Q92922 1105 aaPredicted RBP20.47■□□□□ 0.87
SMG6-220ENST00000576218 PALLDQ8WX93 1383 aa20.46■□□□□ 0.87
SMG6-220ENST00000576218 SLC15A2Q16348 729 aa20.46■□□□□ 0.87
SMG6-220ENST00000576218 DCAF5Q96JK2 942 aa20.46■□□□□ 0.87
SMG6-220ENST00000576218 TOGARAM1Q9Y4F4 1720 aa20.46■□□□□ 0.87
SMG6-220ENST00000576218 KCNQ4P56696 695 aa20.45■□□□□ 0.86
SMG6-220ENST00000576218 COL3A1P02461 1466 aaPredicted RBP20.44■□□□□ 0.86
SMG6-220ENST00000576218 PIGBQ92521 554 aa20.44■□□□□ 0.86
SMG6-220ENST00000576218 LRRC4BQ9NT99 713 aa20.44■□□□□ 0.86
SMG6-220ENST00000576218 HMGB2P26583 209 aaKnown RBP20.43■□□□□ 0.86
SMG6-220ENST00000576218 CABP4P57796 275 aa20.43■□□□□ 0.86
SMG6-220ENST00000576218 ITGB4P16144 1822 aa20.42■□□□□ 0.86
SMG6-220ENST00000576218 TFCP2L1Q9NZI6 479 aa20.42■□□□□ 0.86
SMG6-220ENST00000576218 LRP5O75197 1615 aa20.42■□□□□ 0.86
SMG6-220ENST00000576218 ERVV-2B6SEH9 535 aa20.41■□□□□ 0.86
SMG6-220ENST00000576218 U2AF1L5P0DN76 240 aaPredicted RBP20.41■□□□□ 0.86
SMG6-220ENST00000576218 U2AF1Q01081 240 aaKnown RBP eCLIP20.41■□□□□ 0.86
SMG6-220ENST00000576218 AKAP4Q5JQC9 854 aa20.41■□□□□ 0.86
SMG6-220ENST00000576218 SPON1Q9HCB6 807 aa20.41■□□□□ 0.86
SMG6-220ENST00000576218 PPP1R1BQ9UD71 204 aaPredicted RBP20.41■□□□□ 0.86
SMG6-220ENST00000576218 LY75O60449 1722 aa20.4■□□□□ 0.86
SMG6-220ENST00000576218 ZNF827Q17R98 1081 aa20.4■□□□□ 0.86
SMG6-220ENST00000576218 PAPPAQ13219 1627 aa20.39■□□□□ 0.86
SMG6-220ENST00000576218 MSH5O43196 834 aa20.38■□□□□ 0.85
SMG6-220ENST00000576218 ZBTB7AO95365 584 aa20.38■□□□□ 0.85
SMG6-220ENST00000576218 RALBP1Q15311 655 aa20.38■□□□□ 0.85
SMG6-220ENST00000576218 KDM6AO15550 1401 aaPredicted RBP20.37■□□□□ 0.85
SMG6-220ENST00000576218 GAS2L2Q8NHY3 880 aa20.37■□□□□ 0.85
SMG6-220ENST00000576218 ASAP1Q9ULH1 1129 aa20.37■□□□□ 0.85
SMG6-220ENST00000576218 SRCAPQ6ZRS2 3230 aa20.36■□□□□ 0.85
SMG6-220ENST00000576218 NEFMP07197 916 aa20.36■□□□□ 0.85
SMG6-220ENST00000576218 PRKAR2BP31323 418 aa20.36■□□□□ 0.85
SMG6-220ENST00000576218 MTHFSDQ2M296 383 aaKnown RBP20.36■□□□□ 0.85
SMG6-220ENST00000576218 RBM42Q9BTD8 480 aaKnown RBP20.36■□□□□ 0.85
SMG6-220ENST00000576218 LOC102724428A0A0B4J2F2 783 aa20.35■□□□□ 0.85
SMG6-220ENST00000576218 SIK1P57059 783 aa20.35■□□□□ 0.85
SMG6-220ENST00000576218 AKT1S1Q96B36 256 aa20.35■□□□□ 0.85
SMG6-220ENST00000576218 AK7Q96M32 723 aa20.35■□□□□ 0.85
SMG6-220ENST00000576218 PDGFDQ9GZP0 370 aaPredicted RBP20.35■□□□□ 0.85
SMG6-220ENST00000576218 ATP6V1AP38606 617 aa20.34■□□□□ 0.85
SMG6-220ENST00000576218 NFATC2IPQ8NCF5 419 aa20.34■□□□□ 0.85
SMG6-220ENST00000576218 ATG3Q9NT62 314 aa20.34■□□□□ 0.85
SMG6-220ENST00000576218 ATF5Q9Y2D1 282 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms