RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 IGSF1Q8N6C5 1336 aa11.6□□□□□ -0.55
UBR1-204ENST00000563239 RGPD1P0DJD0 1748 aa11.6□□□□□ -0.55
UBR1-204ENST00000563239 COL3A1P02461 1466 aaPredicted RBP11.6□□□□□ -0.55
UBR1-204ENST00000563239 SBF2Q86WG5 1849 aa11.59□□□□□ -0.55
UBR1-204ENST00000563239 PPP2R1AP30153 589 aa11.59□□□□□ -0.55
UBR1-204ENST00000563239 ZCRB1Q8TBF4 217 aaKnown RBP11.59□□□□□ -0.55
UBR1-204ENST00000563239 PARD3Q8TEW0 1356 aa11.58□□□□□ -0.56
UBR1-204ENST00000563239 TATP17735 454 aaPredicted RBP11.58□□□□□ -0.56
UBR1-204ENST00000563239 AEBP1Q8IUX7 1158 aa11.58□□□□□ -0.56
UBR1-204ENST00000563239 DDX54Q8TDD1 881 aaKnown RBP11.58□□□□□ -0.56
UBR1-204ENST00000563239 RAPGEF4Q8WZA2 1011 aa11.58□□□□□ -0.56
UBR1-204ENST00000563239 CYP27B1O15528 508 aa11.57□□□□□ -0.56
UBR1-204ENST00000563239 KCNQ2O43526 872 aa11.57□□□□□ -0.56
UBR1-204ENST00000563239 PKD1L3Q7Z443 1732 aa11.57□□□□□ -0.56
UBR1-204ENST00000563239 KDRP35968 1356 aa11.56□□□□□ -0.56
UBR1-204ENST00000563239 MSH5O43196 834 aa11.56□□□□□ -0.56
UBR1-204ENST00000563239 EN1Q05925 392 aaPredicted RBP11.56□□□□□ -0.56
UBR1-204ENST00000563239 CAMKK2Q96RR4 588 aa11.56□□□□□ -0.56
UBR1-204ENST00000563239 BCL11BQ9C0K0 894 aaPredicted RBP11.56□□□□□ -0.56
UBR1-204ENST00000563239 ZNF316A6NFI3 1004 aaPredicted RBP11.55□□□□□ -0.56
UBR1-204ENST00000563239 DIAPH1O60610 1272 aaKnown RBP11.55□□□□□ -0.56
UBR1-204ENST00000563239 APBA3O96018 575 aa11.55□□□□□ -0.56
UBR1-204ENST00000563239 SF3B2Q13435 895 aaKnown RBP11.55□□□□□ -0.56
UBR1-204ENST00000563239 SULT6B1Q6IMI4 303 aa11.55□□□□□ -0.56
UBR1-204ENST00000563239 ACSBG1Q96GR2 724 aa11.55□□□□□ -0.56
UBR1-204ENST00000563239 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.55□□□□□ -0.566e-7■■■■□ 24.3
UBR1-204ENST00000563239 NHSQ6T4R5 1651 aa11.55□□□□□ -0.56
UBR1-204ENST00000563239 PLEKHG2Q9H7P9 1386 aa11.54□□□□□ -0.56
UBR1-204ENST00000563239 BAG6P46379 1132 aa11.54□□□□□ -0.56
UBR1-204ENST00000563239 EZH2Q15910 746 aaKnown RBP11.54□□□□□ -0.56
UBR1-204ENST00000563239 PCDH11XQ9BZA7 1347 aa11.54□□□□□ -0.56
UBR1-204ENST00000563239 PCDH11YQ9BZA8 1340 aa11.54□□□□□ -0.56
UBR1-204ENST00000563239 NKX1-1Q15270 411 aaPredicted RBP11.53□□□□□ -0.56
UBR1-204ENST00000563239 SPG7Q9UQ90 795 aa11.53□□□□□ -0.56
UBR1-204ENST00000563239 PLSCR1O15162 318 aa11.52□□□□□ -0.57
UBR1-204ENST00000563239 HMOX1P09601 288 aa11.52□□□□□ -0.57
UBR1-204ENST00000563239 PHKG2P15735 406 aa11.52□□□□□ -0.57
UBR1-204ENST00000563239 PRIM1P49642 420 aaKnown RBP11.52□□□□□ -0.57
UBR1-204ENST00000563239 PROM2Q8N271 834 aa11.52□□□□□ -0.57
UBR1-204ENST00000563239 DOT1LQ8TEK3 1739 aa11.52□□□□□ -0.57
UBR1-204ENST00000563239 TOGARAM1Q9Y4F4 1720 aa11.52□□□□□ -0.57
UBR1-204ENST00000563239 RALBP1Q15311 655 aa11.51□□□□□ -0.57
UBR1-204ENST00000563239 RREB1Q92766 1687 aa11.51□□□□□ -0.57
UBR1-204ENST00000563239 RGPD3A6NKT7 1758 aaPredicted RBP11.5□□□□□ -0.57
UBR1-204ENST00000563239 RGPD4Q7Z3J3 1758 aa11.5□□□□□ -0.57
UBR1-204ENST00000563239 PLEKHO1Q53GL0 409 aaPredicted RBP11.5□□□□□ -0.57
UBR1-204ENST00000563239 CFAP53Q96M91 514 aa11.5□□□□□ -0.57
UBR1-204ENST00000563239 BTAF1O14981 1849 aa11.5□□□□□ -0.57
UBR1-204ENST00000563239 U2SURPO15042 1029 aaKnown RBP11.49□□□□□ -0.57
UBR1-204ENST00000563239 AMOTQ4VCS5 1084 aa11.49□□□□□ -0.57
UBR1-204ENST00000563239 NCBP3Q53F19 620 aaKnown RBP11.49□□□□□ -0.57
UBR1-204ENST00000563239 IFNL2Q8IZJ0 200 aa11.49□□□□□ -0.57
UBR1-204ENST00000563239 ZNF530Q6P9A1 599 aaPredicted RBP11.48□□□□□ -0.57
UBR1-204ENST00000563239 RSPH6AQ9H0K4 717 aa11.48□□□□□ -0.57
UBR1-204ENST00000563239 PRKRIP1Q9H875 184 aaPredicted RBP11.48□□□□□ -0.57
UBR1-204ENST00000563239 NUP188Q5SRE5 1749 aa11.48□□□□□ -0.57
UBR1-204ENST00000563239 KDM6AO15550 1401 aaPredicted RBP11.47□□□□□ -0.57
UBR1-204ENST00000563239 MYBBP1AQ9BQG0 1328 aaKnown RBP11.47□□□□□ -0.57
UBR1-204ENST00000563239 TXNRD1Q16881 649 aa11.47□□□□□ -0.57
UBR1-204ENST00000563239 MTHFSDQ2M296 383 aaKnown RBP11.47□□□□□ -0.57
UBR1-204ENST00000563239 SYTL4Q96C24 671 aaPredicted RBP11.47□□□□□ -0.57
UBR1-204ENST00000563239 PHACTR3Q96KR7 559 aa11.47□□□□□ -0.57
UBR1-204ENST00000563239 PIGBQ92521 554 aa11.46□□□□□ -0.57
UBR1-204ENST00000563239 NUDCQ9Y266 331 aa11.46□□□□□ -0.57
UBR1-204ENST00000563239 ITGB4P16144 1822 aa11.46□□□□□ -0.58
UBR1-204ENST00000563239 U2AF1L5P0DN76 240 aaPredicted RBP11.45□□□□□ -0.58
UBR1-204ENST00000563239 PRKAR2BP31323 418 aa11.45□□□□□ -0.58
UBR1-204ENST00000563239 U2AF1Q01081 240 aaKnown RBP eCLIP11.45□□□□□ -0.58
UBR1-204ENST00000563239 MPRIPQ6WCQ1 1025 aa11.45□□□□□ -0.58
UBR1-204ENST00000563239 DCAF5Q96JK2 942 aa11.45□□□□□ -0.58
UBR1-204ENST00000563239 LRRC4BQ9NT99 713 aa11.45□□□□□ -0.58
UBR1-204ENST00000563239 LY75O60449 1722 aa11.44□□□□□ -0.58
UBR1-204ENST00000563239 ERVV-2B6SEH9 535 aa11.44□□□□□ -0.58
UBR1-204ENST00000563239 FCHSD2O94868 740 aa11.44□□□□□ -0.58
UBR1-204ENST00000563239 AKAP4Q5JQC9 854 aa11.44□□□□□ -0.58
UBR1-204ENST00000563239 LGR6Q9HBX8 967 aa11.44□□□□□ -0.58
UBR1-204ENST00000563239 ANO8Q9HCE9 1232 aaPredicted RBP11.44□□□□□ -0.58
UBR1-204ENST00000563239 KAT6BQ8WYB5 2073 aa11.44□□□□□ -0.58
UBR1-204ENST00000563239 ADAMTS7Q9UKP4 1686 aa11.43□□□□□ -0.58
UBR1-204ENST00000563239 PAPPAQ13219 1627 aa11.43□□□□□ -0.58
UBR1-204ENST00000563239 PSDA5PKW4 1024 aaPredicted RBP11.43□□□□□ -0.58
UBR1-204ENST00000563239 HSP90AB1P08238 724 aaKnown RBP11.43□□□□□ -0.58
UBR1-204ENST00000563239 KCNQ4P56696 695 aa11.43□□□□□ -0.58
UBR1-204ENST00000563239 C1orf141Q5JVX7 400 aa11.43□□□□□ -0.58
UBR1-204ENST00000563239 PLEKHF1Q96S99 279 aa11.43□□□□□ -0.58
UBR1-204ENST00000563239 RNMTO43148 476 aaKnown RBP11.42□□□□□ -0.58
UBR1-204ENST00000563239 R3HDM1Q15032 1099 aaKnown RBP11.42□□□□□ -0.58
UBR1-204ENST00000563239 ATG3Q9NT62 314 aa11.42□□□□□ -0.58
UBR1-204ENST00000563239 TMOD3Q9NYL9 352 aa11.42□□□□□ -0.58
UBR1-204ENST00000563239 ASAP1Q9ULH1 1129 aa11.42□□□□□ -0.58
UBR1-204ENST00000563239 PALLDQ8WX93 1383 aa11.41□□□□□ -0.58
UBR1-204ENST00000563239 SCN11AQ9UI33 1791 aa11.41□□□□□ -0.58
UBR1-204ENST00000563239 CCDC184Q52MB2 194 aa11.41□□□□□ -0.58
UBR1-204ENST00000563239 SLC27A3Q5K4L6 730 aa11.41□□□□□ -0.58
UBR1-204ENST00000563239 MRC1P22897 1456 aa11.4□□□□□ -0.58
UBR1-204ENST00000563239 ZNF827Q17R98 1081 aa11.4□□□□□ -0.58
UBR1-204ENST00000563239 NBPF14Q5TI25 921 aa11.4□□□□□ -0.58
UBR1-204ENST00000563239 NFATC2IPQ8NCF5 419 aa11.4□□□□□ -0.58
UBR1-204ENST00000563239 IL17REQ8NFR9 667 aa11.4□□□□□ -0.58
UBR1-204ENST00000563239 GAS2L2Q8NHY3 880 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms