RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 FYB1O15117 783 aa18.13■□□□□ 0.49
SF3B3-202ENST00000562722 KCNQ4P56696 695 aa18.13■□□□□ 0.49
SF3B3-202ENST00000562722 USHBP1Q8N6Y0 703 aa18.13■□□□□ 0.49
SF3B3-202ENST00000562722 AKT1S1Q96B36 256 aa18.13■□□□□ 0.49
SF3B3-202ENST00000562722 TFCP2L1Q9NZI6 479 aa18.13■□□□□ 0.49
SF3B3-202ENST00000562722 TRIM26Q12899 539 aaPredicted RBP18.12■□□□□ 0.49
SF3B3-202ENST00000562722 CDCA8Q53HL2 280 aa18.12■□□□□ 0.49
SF3B3-202ENST00000562722 RAPGEF4Q8WZA2 1011 aa18.12■□□□□ 0.49
SF3B3-202ENST00000562722 DOT1LQ8TEK3 1739 aa18.12■□□□□ 0.49
SF3B3-202ENST00000562722 POLD1P28340 1107 aa18.11■□□□□ 0.49
SF3B3-202ENST00000562722 NBPF6Q5VWK0 638 aa18.11■□□□□ 0.49
SF3B3-202ENST00000562722 NBPF4Q96M43 638 aa18.11■□□□□ 0.49
SF3B3-202ENST00000562722 TATP17735 454 aaPredicted RBP18.1■□□□□ 0.49
SF3B3-202ENST00000562722 CCNL1Q9UK58 526 aaPredicted RBP18.1■□□□□ 0.49
SF3B3-202ENST00000562722 RGPD2P0DJD1 1756 aa18.09■□□□□ 0.49
SF3B3-202ENST00000562722 CGNL1Q0VF96 1302 aa18.09■□□□□ 0.49
SF3B3-202ENST00000562722 PNPLA7Q6ZV29 1317 aa18.09■□□□□ 0.49
SF3B3-202ENST00000562722 SLC16A10Q8TF71 515 aa18.09■□□□□ 0.49
SF3B3-202ENST00000562722 NSD2O96028 1365 aa18.08■□□□□ 0.49
SF3B3-202ENST00000562722 MSH5O43196 834 aa18.08■□□□□ 0.48
SF3B3-202ENST00000562722 HSP90AB2PQ58FF8 381 aa18.08■□□□□ 0.48
SF3B3-202ENST00000562722 GPR162Q16538 588 aa18.07■□□□□ 0.48
SF3B3-202ENST00000562722 SHANK3Q9BYB0 1731 aa18.06■□□□□ 0.48
SF3B3-202ENST00000562722 INSRP06213 1382 aa18.06■□□□□ 0.48
SF3B3-202ENST00000562722 FLT4P35916 1363 aa18.06■□□□□ 0.48
SF3B3-202ENST00000562722 MAP3K5Q99683 1374 aa18.06■□□□□ 0.48
SF3B3-202ENST00000562722 PELP1Q8IZL8 1130 aaKnown RBP18.06■□□□□ 0.48
SF3B3-202ENST00000562722 KIF20BQ96Q89 1820 aa18.05■□□□□ 0.48
SF3B3-202ENST00000562722 PCDH11XQ9BZA7 1347 aa18.05■□□□□ 0.48
SF3B3-202ENST00000562722 PCDH11YQ9BZA8 1340 aa18.05■□□□□ 0.48
SF3B3-202ENST00000562722 ZNF784Q8NCA9 323 aaPredicted RBP18.05■□□□□ 0.48
SF3B3-202ENST00000562722 PPM1GO15355 546 aaPredicted RBP18.04■□□□□ 0.48
SF3B3-202ENST00000562722 NSD3Q9BZ95 1437 aa18.04■□□□□ 0.48
SF3B3-202ENST00000562722 QSER1Q2KHR3 1735 aa18.03■□□□□ 0.48
SF3B3-202ENST00000562722 LY75O60449 1722 aa18.03■□□□□ 0.48
SF3B3-202ENST00000562722 KIF24Q5T7B8 1368 aa18.03■□□□□ 0.48
SF3B3-202ENST00000562722 MPRIPQ6WCQ1 1025 aa18.02■□□□□ 0.48
SF3B3-202ENST00000562722 CARD14Q9BXL6 1004 aa18.02■□□□□ 0.48
SF3B3-202ENST00000562722 EMILIN1Q9Y6C2 1016 aa18.02■□□□□ 0.48
SF3B3-202ENST00000562722 UTRNP46939 3433 aa18.01■□□□□ 0.47
SF3B3-202ENST00000562722 POLR3GLQ9BT43 218 aa18.01■□□□□ 0.47
SF3B3-202ENST00000562722 TUBGCP6Q96RT7 1819 aa18■□□□□ 0.47
SF3B3-202ENST00000562722 MSL1Q68DK7 614 aa18■□□□□ 0.47
SF3B3-202ENST00000562722 PALLDQ8WX93 1383 aa18■□□□□ 0.47
SF3B3-202ENST00000562722 COL23A1Q86Y22 540 aaPredicted RBP17.99■□□□□ 0.47
SF3B3-202ENST00000562722 CYP27B1O15528 508 aa17.98■□□□□ 0.47
SF3B3-202ENST00000562722 HMGB2P26583 209 aaKnown RBP17.98■□□□□ 0.47
SF3B3-202ENST00000562722 NLGN2Q8NFZ4 835 aa17.98■□□□□ 0.47
SF3B3-202ENST00000562722 SMARCC1Q92922 1105 aaPredicted RBP17.96■□□□□ 0.47
SF3B3-202ENST00000562722 PCGF6Q9BYE7 350 aa17.96■□□□□ 0.47
SF3B3-202ENST00000562722 SPG7Q9UQ90 795 aa17.96■□□□□ 0.47
SF3B3-202ENST00000562722 FLAD1Q8NFF5 587 aa17.95■□□□□ 0.46
SF3B3-202ENST00000562722 AK7Q96M32 723 aa17.95■□□□□ 0.46
SF3B3-202ENST00000562722 TIMELESSQ9UNS1 1208 aa17.95■□□□□ 0.46
SF3B3-202ENST00000562722 CHD4Q14839 1912 aa17.95■□□□□ 0.46
SF3B3-202ENST00000562722 C5P01031 1676 aa17.95■□□□□ 0.46
SF3B3-202ENST00000562722 TNNT2P45379 298 aaPredicted RBP17.94■□□□□ 0.46
SF3B3-202ENST00000562722 COL24A1Q17RW2 1714 aa17.94■□□□□ 0.46
SF3B3-202ENST00000562722 WASHC2AQ641Q2 1341 aa17.93■□□□□ 0.46
SF3B3-202ENST00000562722 PHF14O94880 888 aa17.92■□□□□ 0.46
SF3B3-202ENST00000562722 PIGBQ92521 554 aa17.92■□□□□ 0.46
SF3B3-202ENST00000562722 EYA1Q99502 592 aa17.92■□□□□ 0.46
SF3B3-202ENST00000562722 TMOD3Q9NYL9 352 aa17.91■□□□□ 0.46
SF3B3-202ENST00000562722 PKD1L3Q7Z443 1732 aa17.91■□□□□ 0.46
SF3B3-202ENST00000562722 TOGARAM1Q9Y4F4 1720 aa17.91■□□□□ 0.46
SF3B3-202ENST00000562722 GRIN3BO60391 1043 aa17.9■□□□□ 0.46
SF3B3-202ENST00000562722 POLKQ9UBT6 870 aa17.9■□□□□ 0.46
SF3B3-202ENST00000562722 NCAPD2Q15021 1401 aa17.89■□□□□ 0.46
SF3B3-202ENST00000562722 SENP3-EIF4A1A0A087X0R7 540 aa17.89■□□□□ 0.45
SF3B3-202ENST00000562722 YBX3P16989 372 aaKnown RBP eCLIP17.89■□□□□ 0.456e-15■■□□□ 14.5
SF3B3-202ENST00000562722 NKX1-1Q15270 411 aaPredicted RBP17.89■□□□□ 0.45
SF3B3-202ENST00000562722 C4BP0C0L5 1744 aa17.89■□□□□ 0.45
SF3B3-202ENST00000562722 ANKRD26Q9UPS8 1709 aa17.89■□□□□ 0.45
SF3B3-202ENST00000562722 C1QTNF8P60827 252 aa17.88■□□□□ 0.45
SF3B3-202ENST00000562722 IFNL2Q8IZJ0 200 aa17.88■□□□□ 0.45
SF3B3-202ENST00000562722 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.88■□□□□ 0.451e-8■□□□□ 9.6
SF3B3-202ENST00000562722 CLSPNQ9HAW4 1339 aa17.88■□□□□ 0.45
SF3B3-202ENST00000562722 ITGB4P16144 1822 aa17.88■□□□□ 0.45
SF3B3-202ENST00000562722 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.87■□□□□ 0.45
SF3B3-202ENST00000562722 LOC102724428A0A0B4J2F2 783 aa17.87■□□□□ 0.45
SF3B3-202ENST00000562722 GIGYF1O75420 1035 aaPredicted RBP17.87■□□□□ 0.45
SF3B3-202ENST00000562722 PHKG2P15735 406 aa17.87■□□□□ 0.45
SF3B3-202ENST00000562722 SIK1P57059 783 aa17.87■□□□□ 0.45
SF3B3-202ENST00000562722 EIF4A2Q14240 407 aaKnown RBP17.87■□□□□ 0.45
SF3B3-202ENST00000562722 CD2APQ9Y5K6 639 aa17.87■□□□□ 0.45
SF3B3-202ENST00000562722 TAF1LQ8IZX4 1826 aa17.86■□□□□ 0.45
SF3B3-202ENST00000562722 SMIM5Q71RC9 77 aa17.86■□□□□ 0.45
SF3B3-202ENST00000562722 MAP2P11137 1827 aaKnown RBP17.85■□□□□ 0.45
SF3B3-202ENST00000562722 ATP6V1AP38606 617 aa17.85■□□□□ 0.45
SF3B3-202ENST00000562722 EIF4G2P78344 907 aaKnown RBP eCLIP17.85■□□□□ 0.45
SF3B3-202ENST00000562722 AMIGO3Q86WK7 504 aa17.85■□□□□ 0.45
SF3B3-202ENST00000562722 LINC00116Q8NCU8 138 aa17.85■□□□□ 0.45
SF3B3-202ENST00000562722 ASAP1Q9ULH1 1129 aa17.85■□□□□ 0.45
SF3B3-202ENST00000562722 GNPATO15228 680 aa17.84■□□□□ 0.45
SF3B3-202ENST00000562722 SSFA2P28290 1259 aa17.84■□□□□ 0.45
SF3B3-202ENST00000562722 HSPA5P11021 654 aaKnown RBP17.83■□□□□ 0.44
SF3B3-202ENST00000562722 PANK3Q9H999 370 aa17.83■□□□□ 0.44
SF3B3-202ENST00000562722 WWC3Q9ULE0 1092 aa17.83■□□□□ 0.44
SF3B3-202ENST00000562722 ITPK1Q13572 414 aa17.82■□□□□ 0.44
SF3B3-202ENST00000562722 GOLGB1Q14789 3259 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 191 ms