RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CLUAP1Q96AJ1 413 aa16.51■□□□□ 0.23
CLK3-206ENST00000562078 NCLP19338 710 aaKnown RBP16.5■□□□□ 0.23
CLK3-206ENST00000562078 TMPOP42166 694 aaKnown RBP16.5■□□□□ 0.23
CLK3-206ENST00000562078 NGDNQ8NEJ9 315 aaKnown RBP16.5■□□□□ 0.23
CLK3-206ENST00000562078 C22orf23Q9BZE7 217 aa16.5■□□□□ 0.23
CLK3-206ENST00000562078 TMEM51Q9NW97 253 aa16.5■□□□□ 0.23
CLK3-206ENST00000562078 ZNF500O60304 480 aaPredicted RBP16.5■□□□□ 0.23
CLK3-206ENST00000562078 EMILIN1Q9Y6C2 1016 aa16.5■□□□□ 0.23
CLK3-206ENST00000562078 CDK12Q9NYV4 1490 aaPredicted RBP16.49■□□□□ 0.23
CLK3-206ENST00000562078 DLG5Q8TDM6 1919 aa16.49■□□□□ 0.23
CLK3-206ENST00000562078 NOL7Q9UMY1 257 aaKnown RBP16.49■□□□□ 0.23
CLK3-206ENST00000562078 COG6Q9Y2V7 657 aa16.49■□□□□ 0.23
CLK3-206ENST00000562078 DDIT3P35638 169 aa16.48■□□□□ 0.23
CLK3-206ENST00000562078 MFAP1P55081 439 aaKnown RBP16.48■□□□□ 0.23
CLK3-206ENST00000562078 USP6P35125 1406 aa16.48■□□□□ 0.23
CLK3-206ENST00000562078 HSCBQ8IWL3 235 aa16.48■□□□□ 0.23
CLK3-206ENST00000562078 VGLL3A8MV65 326 aa16.47■□□□□ 0.23
CLK3-206ENST00000562078 RARSP54136 660 aaKnown RBP16.47■□□□□ 0.23
CLK3-206ENST00000562078 PANK1Q8TE04 598 aa16.47■□□□□ 0.23
CLK3-206ENST00000562078 TRIM35Q9UPQ4 493 aa16.47■□□□□ 0.23
CLK3-206ENST00000562078 SKOR2Q2VWA4 1001 aaPredicted RBP16.47■□□□□ 0.23
CLK3-206ENST00000562078 JARID2Q92833 1246 aaPredicted RBP16.47■□□□□ 0.23
CLK3-206ENST00000562078 TSR2Q969E8 191 aaKnown RBP16.47■□□□□ 0.23
CLK3-206ENST00000562078 COG3Q96JB2 828 aa16.47■□□□□ 0.23
CLK3-206ENST00000562078 CBX1P83916 185 aa16.46■□□□□ 0.23
CLK3-206ENST00000562078 IPO4Q8TEX9 1081 aaKnown RBP16.46■□□□□ 0.23
CLK3-206ENST00000562078 GBP4Q96PP9 640 aa16.46■□□□□ 0.23
CLK3-206ENST00000562078 BCL2L13Q9BXK5 485 aa16.46■□□□□ 0.23
CLK3-206ENST00000562078 TTC21BQ7Z4L5 1316 aa16.46■□□□□ 0.23
CLK3-206ENST00000562078 PDZRN3Q9UPQ7 1066 aa16.45■□□□□ 0.22
CLK3-206ENST00000562078 AATKQ6ZMQ8 1374 aa16.45■□□□□ 0.22
CLK3-206ENST00000562078 PDE3AQ14432 1141 aa16.45■□□□□ 0.22
CLK3-206ENST00000562078 TMEM94Q12767 1356 aa16.45■□□□□ 0.22
CLK3-206ENST00000562078 KIF20AO95235 890 aa16.44■□□□□ 0.22
CLK3-206ENST00000562078 PRKAR2BP31323 418 aa16.44■□□□□ 0.22
CLK3-206ENST00000562078 RRS1Q15050 365 aaKnown RBP16.44■□□□□ 0.22
CLK3-206ENST00000562078 SASS6Q6UVJ0 657 aa16.44■□□□□ 0.22
CLK3-206ENST00000562078 FCHSD2O94868 740 aa16.44■□□□□ 0.22
CLK3-206ENST00000562078 HMOX1P09601 288 aa16.43■□□□□ 0.22
CLK3-206ENST00000562078 ESCO1Q5FWF5 840 aa16.43■□□□□ 0.22
CLK3-206ENST00000562078 GTPBP4Q9BZE4 634 aaKnown RBP16.43■□□□□ 0.22
CLK3-206ENST00000562078 PHF8Q9UPP1 1060 aa16.43■□□□□ 0.22
CLK3-206ENST00000562078 NCOA3Q9Y6Q9 1424 aa16.43■□□□□ 0.22
CLK3-206ENST00000562078 RAB3GAP1Q15042 981 aa16.43■□□□□ 0.22
CLK3-206ENST00000562078 HS1BP3Q53T59 392 aa16.43■□□□□ 0.22
CLK3-206ENST00000562078 PLCD3Q8N3E9 789 aa16.42■□□□□ 0.22
CLK3-206ENST00000562078 TSC1Q92574 1164 aa16.42■□□□□ 0.22
CLK3-206ENST00000562078 ZNF830Q96NB3 372 aaPredicted RBP16.42■□□□□ 0.22
CLK3-206ENST00000562078 C19orf44Q9H6X5 657 aa16.42■□□□□ 0.22
CLK3-206ENST00000562078 PCDHB15Q9Y5E8 787 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 TTC21AQ8NDW8 1320 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 ZBTB7CA1YPR0 619 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 IL13P35225 146 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 CSPP1Q1MSJ5 1256 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 FOXD4L1Q9NU39 408 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 TNNQ9UQP3 1299 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 ZKSCAN5Q9Y2L8 839 aa16.41■□□□□ 0.22
CLK3-206ENST00000562078 OVOS2A0A0J9YW53 1432 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 OVOS2Q6IE36 1432 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 SSH2Q76I76 1423 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 PEAK1Q9H792 1746 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 ATF3P18847 181 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 EXOSC9Q06265 439 aaKnown RBP16.4■□□□□ 0.22
CLK3-206ENST00000562078 XIRP1Q702N8 1843 aaKnown RBP16.4■□□□□ 0.22
CLK3-206ENST00000562078 IL16Q14005 1332 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 ZBTB22O15209 634 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 LETM1O95202 739 aaPredicted RBP16.4■□□□□ 0.22
CLK3-206ENST00000562078 PIK3C2AO00443 1686 aa16.4■□□□□ 0.22
CLK3-206ENST00000562078 RLBP1P12271 317 aa16.39■□□□□ 0.21
CLK3-206ENST00000562078 ATP2B3Q16720 1220 aa16.39■□□□□ 0.21
CLK3-206ENST00000562078 PHACTR3Q96KR7 559 aa16.39■□□□□ 0.21
CLK3-206ENST00000562078 ZNF335Q9H4Z2 1342 aaPredicted RBP16.39■□□□□ 0.21
CLK3-206ENST00000562078 ZNF710Q8N1W2 664 aa16.39■□□□□ 0.21
CLK3-206ENST00000562078 PDLIM2Q96JY6 352 aa16.38■□□□□ 0.21
CLK3-206ENST00000562078 DDX49Q9Y6V7 483 aaKnown RBP16.38■□□□□ 0.21
CLK3-206ENST00000562078 PAXIP1Q6ZW49 1069 aaPredicted RBP16.38■□□□□ 0.21
CLK3-206ENST00000562078 SMC5Q8IY18 1101 aa16.38■□□□□ 0.21
CLK3-206ENST00000562078 ORAI2Q96SN7 254 aa16.38■□□□□ 0.21
CLK3-206ENST00000562078 MSH6P52701 1360 aa16.38■□□□□ 0.21
CLK3-206ENST00000562078 RBSNQ9H1K0 784 aa16.37■□□□□ 0.21
CLK3-206ENST00000562078 KIF1AQ12756 1690 aa16.37■□□□□ 0.21
CLK3-206ENST00000562078 CT47B1P0C2W7 299 aaPredicted RBP16.37■□□□□ 0.21
CLK3-206ENST00000562078 PSME1Q06323 249 aa16.37■□□□□ 0.21
CLK3-206ENST00000562078 NFE2L2Q16236 605 aa16.37■□□□□ 0.21
CLK3-206ENST00000562078 C1orf167Q5SNV9 1468 aa16.36■□□□□ 0.21
CLK3-206ENST00000562078 DCCP43146 1447 aa16.36■□□□□ 0.21
CLK3-206ENST00000562078 IGSF3O75054 1194 aa16.36■□□□□ 0.21
CLK3-206ENST00000562078 HSP90AB1P08238 724 aaKnown RBP16.36■□□□□ 0.21
CLK3-206ENST00000562078 SMC4Q9NTJ3 1288 aa16.36■□□□□ 0.21
CLK3-206ENST00000562078 CIZ1Q9ULV3 898 aaPredicted RBP16.36■□□□□ 0.21
CLK3-206ENST00000562078 SOX12O15370 315 aa16.36■□□□□ 0.21
CLK3-206ENST00000562078 PTMSP20962 102 aa16.36■□□□□ 0.21
CLK3-206ENST00000562078 KLHL40Q2TBA0 621 aa16.36■□□□□ 0.21
CLK3-206ENST00000562078 IBTKQ9P2D0 1353 aaPredicted RBP16.35■□□□□ 0.21
CLK3-206ENST00000562078 SSFA2P28290 1259 aa16.35■□□□□ 0.21
CLK3-206ENST00000562078 THUMPD2Q9BTF0 503 aaKnown RBP16.35■□□□□ 0.21
CLK3-206ENST00000562078 RGPD1P0DJD0 1748 aa16.35■□□□□ 0.21
CLK3-206ENST00000562078 NUTM2GQ5VZR2 741 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 CADPS2Q86UW7 1296 aa16.34■□□□□ 0.21
CLK3-206ENST00000562078 ABTB2Q8N961 1025 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms