RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PPP4R2Q9NY27 417 aa27.5■■□□□ 1.99
CLN3-209ENST00000561689 CT47B1P0C2W7 299 aaPredicted RBP27.49■■□□□ 1.99
CLN3-209ENST00000561689 ABCC6O95255 1503 aa27.49■■□□□ 1.99
CLN3-209ENST00000561689 MAP3K5Q99683 1374 aa27.49■■□□□ 1.99
CLN3-209ENST00000561689 HTATSF1O43719 755 aaKnown RBP27.48■■□□□ 1.99
CLN3-209ENST00000561689 EXOC6Q8TAG9 804 aa27.48■■□□□ 1.99
CLN3-209ENST00000561689 CRB1P82279 1406 aa27.48■■□□□ 1.99
CLN3-209ENST00000561689 PLEKHO1Q53GL0 409 aaPredicted RBP27.48■■□□□ 1.99
CLN3-209ENST00000561689 UBAP1LF5GYI3 381 aa27.46■■□□□ 1.99
CLN3-209ENST00000561689 CAMTA1Q9Y6Y1 1673 aa27.46■■□□□ 1.99
CLN3-209ENST00000561689 CHL1O00533 1208 aa27.46■■□□□ 1.99
CLN3-209ENST00000561689 IL17REQ8NFR9 667 aa27.46■■□□□ 1.99
CLN3-209ENST00000561689 ABCA3Q99758 1704 aa27.46■■□□□ 1.99
CLN3-209ENST00000561689 AMOTQ4VCS5 1084 aa27.45■■□□□ 1.98
CLN3-209ENST00000561689 ZNF530Q6P9A1 599 aaPredicted RBP27.45■■□□□ 1.98
CLN3-209ENST00000561689 TSPYL6Q8N831 410 aa27.44■■□□□ 1.98
CLN3-209ENST00000561689 FRAT1Q92837 279 aaPredicted RBP27.44■■□□□ 1.98
CLN3-209ENST00000561689 MIS18AQ9NYP9 233 aa27.44■■□□□ 1.98
CLN3-209ENST00000561689 RAPGEF4Q8WZA2 1011 aa27.44■■□□□ 1.98
CLN3-209ENST00000561689 CRBNQ96SW2 442 aa27.44■■□□□ 1.98
CLN3-209ENST00000561689 LMO7Q8WWI1 1683 aa27.44■■□□□ 1.98
CLN3-209ENST00000561689 ELL2O00472 640 aaPredicted RBP27.43■■□□□ 1.98
CLN3-209ENST00000561689 CANXP27824 592 aaKnown RBP27.43■■□□□ 1.98
CLN3-209ENST00000561689 B4GALNT3Q6L9W6 998 aa27.42■■□□□ 1.98
CLN3-209ENST00000561689 C8orf58Q8NAV2 365 aa27.42■■□□□ 1.98
CLN3-209ENST00000561689 SSH1Q8WYL5 1049 aa27.42■■□□□ 1.98
CLN3-209ENST00000561689 SMC4Q9NTJ3 1288 aa27.41■■□□□ 1.98
CLN3-209ENST00000561689 WDR17Q8IZU2 1322 aa27.41■■□□□ 1.98
CLN3-209ENST00000561689 AKAP4Q5JQC9 854 aa27.4■■□□□ 1.98
CLN3-209ENST00000561689 COL5A2P05997 1499 aaPredicted RBP27.4■■□□□ 1.98
CLN3-209ENST00000561689 VAMP4O75379 141 aa27.4■■□□□ 1.98
CLN3-209ENST00000561689 TOM1L2Q6ZVM7 507 aa27.4■■□□□ 1.98
CLN3-209ENST00000561689 STRN4Q9NRL3 753 aa27.4■■□□□ 1.98
CLN3-209ENST00000561689 TATP17735 454 aaPredicted RBP27.39■■□□□ 1.98
CLN3-209ENST00000561689 TWISTNBQ3B726 338 aaPredicted RBP27.39■■□□□ 1.97
CLN3-209ENST00000561689 C1orf141Q5JVX7 400 aa27.39■■□□□ 1.97
CLN3-209ENST00000561689 LGR6Q9HBX8 967 aa27.39■■□□□ 1.97
CLN3-209ENST00000561689 TSPYL4Q9UJ04 414 aa27.39■■□□□ 1.97
CLN3-209ENST00000561689 EVA1CP58658 441 aa27.38■■□□□ 1.97
CLN3-209ENST00000561689 KRT24Q2M2I5 525 aa27.37■■□□□ 1.97
CLN3-209ENST00000561689 FAM208AQ9UK61 1670 aaKnown RBP27.37■■□□□ 1.97
CLN3-209ENST00000561689 MEGF6O75095 1541 aa27.37■■□□□ 1.97
CLN3-209ENST00000561689 PHLPP1O60346 1717 aa27.37■■□□□ 1.97
CLN3-209ENST00000561689 MPRIPQ6WCQ1 1025 aa27.37■■□□□ 1.97
CLN3-209ENST00000561689 LARP1Q6PKG0 1096 aaKnown RBP27.35■■□□□ 1.97
CLN3-209ENST00000561689 COL16A1Q07092 1604 aaPredicted RBP27.35■■□□□ 1.97
CLN3-209ENST00000561689 BTG4Q9NY30 223 aa27.35■■□□□ 1.97
CLN3-209ENST00000561689 CEMIPQ8WUJ3 1361 aa27.34■■□□□ 1.97
CLN3-209ENST00000561689 TAF7Q15545 349 aaPredicted RBP27.34■■□□□ 1.97
CLN3-209ENST00000561689 ALDH1L2Q3SY69 923 aa27.34■■□□□ 1.97
CLN3-209ENST00000561689 ZNF428Q96B54 188 aa27.34■■□□□ 1.97
CLN3-209ENST00000561689 PDE3AQ14432 1141 aa27.33■■□□□ 1.97
CLN3-209ENST00000561689 PANK1Q8TE04 598 aa27.33■■□□□ 1.97
CLN3-209ENST00000561689 TNNQ9UQP3 1299 aa27.33■■□□□ 1.97
CLN3-209ENST00000561689 COL22A1Q8NFW1 1626 aaPredicted RBP27.33■■□□□ 1.97
CLN3-209ENST00000561689 CCDC136Q96JN2 1154 aa27.33■■□□□ 1.97
CLN3-209ENST00000561689 SPG7Q9UQ90 795 aa27.33■■□□□ 1.97
CLN3-209ENST00000561689 LRRC37A3O60309 1634 aa27.32■■□□□ 1.96
CLN3-209ENST00000561689 TCERG1O14776 1098 aaKnown RBP27.31■■□□□ 1.96
CLN3-209ENST00000561689 CERKQ8TCT0 537 aa27.31■■□□□ 1.96
CLN3-209ENST00000561689 CARD10Q9BWT7 1032 aa27.31■■□□□ 1.96
CLN3-209ENST00000561689 NOB1Q9ULX3 412 aaKnown RBP27.31■■□□□ 1.96
CLN3-209ENST00000561689 RNMTO43148 476 aaKnown RBP27.3■■□□□ 1.96
CLN3-209ENST00000561689 ADAMTS2O95450 1211 aa27.3■■□□□ 1.96
CLN3-209ENST00000561689 ZKSCAN2Q63HK3 967 aa27.3■■□□□ 1.96
CLN3-209ENST00000561689 CLUAP1Q96AJ1 413 aa27.3■■□□□ 1.96
CLN3-209ENST00000561689 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.3■■□□□ 1.96
CLN3-209ENST00000561689 RLBP1P12271 317 aa27.28■■□□□ 1.96
CLN3-209ENST00000561689 TEFQ10587 303 aa27.28■■□□□ 1.96
CLN3-209ENST00000561689 NUTM2BA6NNL0 878 aaPredicted RBP27.28■■□□□ 1.96
CLN3-209ENST00000561689 NUTM2EB1AL46 878 aaPredicted RBP27.28■■□□□ 1.96
CLN3-209ENST00000561689 NUTM2AQ8IVF1 878 aaPredicted RBP27.28■■□□□ 1.96
CLN3-209ENST00000561689 PELP1Q8IZL8 1130 aaKnown RBP27.28■■□□□ 1.96
CLN3-209ENST00000561689 USP35Q9P2H5 1018 aa27.28■■□□□ 1.96
CLN3-209ENST00000561689 COG6Q9Y2V7 657 aa27.28■■□□□ 1.96
CLN3-209ENST00000561689 PHKG2P15735 406 aa27.27■■□□□ 1.96
CLN3-209ENST00000561689 MRPL50Q8N5N7 158 aaKnown RBP27.27■■□□□ 1.96
CLN3-209ENST00000561689 BABAM1Q9NWV8 329 aa27.27■■□□□ 1.96
CLN3-209ENST00000561689 KIF16BQ96L93 1317 aa27.26■■□□□ 1.95
CLN3-209ENST00000561689 TRIM27P14373 513 aa27.25■■□□□ 1.95
CLN3-209ENST00000561689 OVOS2A0A0G2JMS6 1433 aa27.25■■□□□ 1.95
CLN3-209ENST00000561689 CYP27B1O15528 508 aa27.24■■□□□ 1.95
CLN3-209ENST00000561689 IFNL2Q8IZJ0 200 aa27.24■■□□□ 1.95
CLN3-209ENST00000561689 IL2RBP14784 551 aa27.24■■□□□ 1.95
CLN3-209ENST00000561689 BRPF1P55201 1214 aaPredicted RBP27.24■■□□□ 1.95
CLN3-209ENST00000561689 ATF7IPQ6VMQ6 1270 aa27.24■■□□□ 1.95
CLN3-209ENST00000561689 PLEKHG2Q9H7P9 1386 aa27.23■■□□□ 1.95
CLN3-209ENST00000561689 FTSJ3Q8IY81 847 aaKnown RBP27.23■■□□□ 1.95
CLN3-209ENST00000561689 DZIP1LQ8IYY4 767 aaKnown RBP27.23■■□□□ 1.95
CLN3-209ENST00000561689 COL14A1Q05707 1796 aaKnown RBP27.23■■□□□ 1.95
CLN3-209ENST00000561689 BTBD11A6QL63 1104 aa27.22■■□□□ 1.95
CLN3-209ENST00000561689 IPO8O15397 1037 aaKnown RBP27.22■■□□□ 1.95
CLN3-209ENST00000561689 ZCRB1Q8TBF4 217 aaKnown RBP27.2■■□□□ 1.95
CLN3-209ENST00000561689 KCNQ3O43525 872 aa27.2■■□□□ 1.94
CLN3-209ENST00000561689 KDM6AO15550 1401 aaPredicted RBP27.19■■□□□ 1.94
CLN3-209ENST00000561689 MS4A1P11836 297 aa27.18■■□□□ 1.94
CLN3-209ENST00000561689 EIF4A1P60842 406 aaKnown RBP27.17■■□□□ 1.94
CLN3-209ENST00000561689 DCAF5Q96JK2 942 aa27.17■■□□□ 1.94
CLN3-209ENST00000561689 PKD1L3Q7Z443 1732 aa27.16■■□□□ 1.94
CLN3-209ENST00000561689 PCDH11XQ9BZA7 1347 aa27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms