RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.1	□□□□□ -0.79
TPM1-231	ENST00000561395	INSR	P06213	1382 aa		10.1	□□□□□ -0.79
TPM1-231	ENST00000561395	GOLGB1	Q14789	3259 aa	Known RBP	10.09	□□□□□ -0.79
TPM1-231	ENST00000561395	MORC1	Q86VD1	984 aa		10.09	□□□□□ -0.79
TPM1-231	ENST00000561395	NGDN	Q8NEJ9	315 aa	Known RBP	10.09	□□□□□ -0.79
TPM1-231	ENST00000561395	THRAP3	Q9Y2W1	955 aa	Known RBP	10.09	□□□□□ -0.79
TPM1-231	ENST00000561395	CCDC61	Q9Y6R9	512 aa		10.09	□□□□□ -0.79
TPM1-231	ENST00000561395	MAP3K5	Q99683	1374 aa		10.09	□□□□□ -0.79
TPM1-231	ENST00000561395	BTAF1	O14981	1849 aa		10.09	□□□□□ -0.79
TPM1-231	ENST00000561395	SGIP1	Q9BQI5	828 aa		10.08	□□□□□ -0.8
TPM1-231	ENST00000561395	COL18A1	P39060	1754 aa		10.08	□□□□□ -0.8
TPM1-231	ENST00000561395	ZBED9	Q6R2W3	1325 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	CRB1	P82279	1406 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	CPD	O75976	1380 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	NUTM2G	Q5VZR2	741 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	PTF1A	Q7RTS3	328 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	PROM2	Q8N271	834 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	MTFR1L	Q9H019	292 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	STK32B	Q9NY57	414 aa		10.07	□□□□□ -0.8
TPM1-231	ENST00000561395	POLR3A	O14802	1390 aa	Predicted RBP	10.06	□□□□□ -0.8
TPM1-231	ENST00000561395	PLEKHG3	A1L390	1219 aa		10.05	□□□□□ -0.8
TPM1-231	ENST00000561395	FYB1	O15117	783 aa		10.05	□□□□□ -0.8
TPM1-231	ENST00000561395	SLC15A2	Q16348	729 aa		10.05	□□□□□ -0.8
TPM1-231	ENST00000561395	GPR162	Q16538	588 aa		10.05	□□□□□ -0.8
TPM1-231	ENST00000561395	ARX	Q96QS3	562 aa		10.05	□□□□□ -0.8
TPM1-231	ENST00000561395	USP6	P35125	1406 aa		10.05	□□□□□ -0.8
TPM1-231	ENST00000561395	AATK	Q6ZMQ8	1374 aa		10.04	□□□□□ -0.8
TPM1-231	ENST00000561395	FKBP8	Q14318	412 aa		10.04	□□□□□ -0.8
TPM1-231	ENST00000561395	DDB1	Q16531	1140 aa		10.04	□□□□□ -0.8
TPM1-231	ENST00000561395	GGNBP2	Q9H3C7	697 aa		10.04	□□□□□ -0.8
TPM1-231	ENST00000561395	BCL9	O00512	1426 aa		10.04	□□□□□ -0.8
TPM1-231	ENST00000561395	USP19	O94966	1318 aa		10.04	□□□□□ -0.8
TPM1-231	ENST00000561395	USP54	Q70EL1	1684 aa		10.03	□□□□□ -0.8
TPM1-231	ENST00000561395	TXNRD1	Q16881	649 aa		10.03	□□□□□ -0.8
TPM1-231	ENST00000561395	ZNF692	Q9BU19	519 aa	Predicted RBP	10.03	□□□□□ -0.8
TPM1-231	ENST00000561395	COL3A1	P02461	1466 aa	Predicted RBP	10.03	□□□□□ -0.8
TPM1-231	ENST00000561395	ACE	P12821	1306 aa		10.03	□□□□□ -0.8
TPM1-231	ENST00000561395	TNNT2	P45379	298 aa	Predicted RBP	10.02	□□□□□ -0.81
TPM1-231	ENST00000561395	WDR43	Q15061	677 aa	Known RBP eCLIP	10.02	□□□□□ -0.81
TPM1-231	ENST00000561395	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.02	□□□□□ -0.81
TPM1-231	ENST00000561395	PELP1	Q8IZL8	1130 aa	Known RBP	10.02	□□□□□ -0.81
TPM1-231	ENST00000561395	PIK3C2A	O00443	1686 aa		10.02	□□□□□ -0.81
TPM1-231	ENST00000561395	SMG6	Q86US8	1419 aa	Known RBP	10.01	□□□□□ -0.81
TPM1-231	ENST00000561395	MAP2	P11137	1827 aa	Known RBP	10.01	□□□□□ -0.81
TPM1-231	ENST00000561395	ABCB7	O75027	752 aa		10.01	□□□□□ -0.81
TPM1-231	ENST00000561395	KLHL34	Q8N239	644 aa		10.01	□□□□□ -0.81
TPM1-231	ENST00000561395	SLIT3	O75094	1523 aa		10.01	□□□□□ -0.81
TPM1-231	ENST00000561395	ATP10D	Q9P241	1426 aa		10	□□□□□ -0.81
TPM1-231	ENST00000561395	MTHFS	P49914	203 aa		10	□□□□□ -0.81
TPM1-231	ENST00000561395	NME9	Q86XW9	330 aa		10	□□□□□ -0.81
TPM1-231	ENST00000561395	ABTB2	Q8N961	1025 aa		10	□□□□□ -0.81
TPM1-231	ENST00000561395	MARCH10	Q8NA82	808 aa	Predicted RBP	10	□□□□□ -0.81
TPM1-231	ENST00000561395	CFAP53	Q96M91	514 aa		10	□□□□□ -0.81
TPM1-231	ENST00000561395	ADAMTS8	Q9UP79	889 aa		10	□□□□□ -0.81
TPM1-231	ENST00000561395	TTC21B	Q7Z4L5	1316 aa		10	□□□□□ -0.81
TPM1-231	ENST00000561395	HSPA6	P17066	643 aa		9.99	□□□□□ -0.81
TPM1-231	ENST00000561395	POLA2	Q14181	598 aa		9.99	□□□□□ -0.81
TPM1-231	ENST00000561395	TTC21A	Q8NDW8	1320 aa		9.99	□□□□□ -0.81
TPM1-231	ENST00000561395	LY75	O60449	1722 aa		9.99	□□□□□ -0.81
TPM1-231	ENST00000561395	ABCC6	O95255	1503 aa		9.98	□□□□□ -0.81
TPM1-231	ENST00000561395	ZBTB7C	A1YPR0	619 aa		9.98	□□□□□ -0.81
TPM1-231	ENST00000561395	GC	P02774	474 aa		9.98	□□□□□ -0.81
TPM1-231	ENST00000561395	TOM1L2	Q6ZVM7	507 aa		9.98	□□□□□ -0.81
TPM1-231	ENST00000561395	TNS2	Q63HR2	1409 aa		9.98	□□□□□ -0.81
TPM1-231	ENST00000561395	WDR90	Q96KV7	1748 aa		9.97	□□□□□ -0.81
TPM1-231	ENST00000561395	CACNB1	Q02641	598 aa	Predicted RBP	9.97	□□□□□ -0.81
TPM1-231	ENST00000561395	COG3	Q96JB2	828 aa		9.97	□□□□□ -0.81
TPM1-231	ENST00000561395	GTF3C3	Q9Y5Q9	886 aa		9.97	□□□□□ -0.81
TPM1-231	ENST00000561395	USP31	Q70CQ4	1352 aa		9.97	□□□□□ -0.81
TPM1-231	ENST00000561395	LTN1	O94822	1766 aa		9.96	□□□□□ -0.81
TPM1-231	ENST00000561395	ZNF827	Q17R98	1081 aa		9.96	□□□□□ -0.82
TPM1-231	ENST00000561395	NLGN2	Q8NFZ4	835 aa		9.96	□□□□□ -0.82
TPM1-231	ENST00000561395	WDR17	Q8IZU2	1322 aa		9.96	□□□□□ -0.82
TPM1-231	ENST00000561395	DOT1L	Q8TEK3	1739 aa		9.96	□□□□□ -0.82
TPM1-231	ENST00000561395	YBX3	P16989	372 aa	Known RBP eCLIP	9.95	□□□□□ -0.82
TPM1-231	ENST00000561395	CDCA7	Q9BWT1	371 aa	Predicted RBP	9.95	□□□□□ -0.82
TPM1-231	ENST00000561395	POLK	Q9UBT6	870 aa		9.95	□□□□□ -0.82
TPM1-231	ENST00000561395	ADCY9	O60503	1353 aa		9.94	□□□□□ -0.82
TPM1-231	ENST00000561395	GRIN3B	O60391	1043 aa		9.94	□□□□□ -0.82
TPM1-231	ENST00000561395	POLD1	P28340	1107 aa		9.94	□□□□□ -0.82
TPM1-231	ENST00000561395	GPBP1L1	Q9HC44	474 aa	Predicted RBP	9.94	□□□□□ -0.82
TPM1-231	ENST00000561395	CCDC146	Q8IYE0	955 aa		9.93	□□□□□ -0.82
TPM1-231	ENST00000561395	SLC16A10	Q8TF71	515 aa		9.93	□□□□□ -0.82
TPM1-231	ENST00000561395	NUDC	Q9Y266	331 aa		9.93	□□□□□ -0.82
TPM1-231	ENST00000561395	EMILIN1	Q9Y6C2	1016 aa		9.93	□□□□□ -0.82
TPM1-231	ENST00000561395	ZNF521	Q96K83	1311 aa		9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	TAF1L	Q8IZX4	1826 aa		9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	DIAPH1	O60610	1272 aa	Known RBP	9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	FBLN1	P23142	703 aa		9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	NGEF	Q8N5V2	710 aa		9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	ZNF526	Q8TF50	670 aa	Predicted RBP	9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	RUNDC1	Q96C34	613 aa		9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	ACSBG1	Q96GR2	724 aa		9.92	□□□□□ -0.82
TPM1-231	ENST00000561395	PNPLA7	Q6ZV29	1317 aa		9.91	□□□□□ -0.82
TPM1-231	ENST00000561395	C5	P01031	1676 aa		9.91	□□□□□ -0.82
TPM1-231	ENST00000561395	EXOC5	O00471	708 aa		9.91	□□□□□ -0.82
TPM1-231	ENST00000561395	U2AF1L5	P0DN76	240 aa	Predicted RBP	9.91	□□□□□ -0.82
TPM1-231	ENST00000561395	U2AF1	Q01081	240 aa	Known RBP eCLIP	9.91	□□□□□ -0.82	6e-9	■■■■□ 21.7
TPM1-231	ENST00000561395	RRS1	Q15050	365 aa	Known RBP	9.91	□□□□□ -0.82
TPM1-231	ENST00000561395	CARD10	Q9BWT7	1032 aa		9.91	□□□□□ -0.82

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