RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 AKT1S1Q96B36 256 aa19.53■□□□□ 0.72
LDLR-213ENST00000560502 NSD2O96028 1365 aa19.53■□□□□ 0.72
LDLR-213ENST00000560502 SLC24A1O60721 1099 aa19.52■□□□□ 0.72
LDLR-213ENST00000560502 SLC27A3Q5K4L6 730 aa19.52■□□□□ 0.72
LDLR-213ENST00000560502 DDX54Q8TDD1 881 aaKnown RBP19.52■□□□□ 0.72
LDLR-213ENST00000560502 KIF20BQ96Q89 1820 aa19.52■□□□□ 0.72
LDLR-213ENST00000560502 FBLN1P23142 703 aa19.51■□□□□ 0.71
LDLR-213ENST00000560502 ARXQ96QS3 562 aa19.5■□□□□ 0.71
LDLR-213ENST00000560502 ZNF316A6NFI3 1004 aaPredicted RBP19.49■□□□□ 0.71
LDLR-213ENST00000560502 AMPHP49418 695 aa19.49■□□□□ 0.71
LDLR-213ENST00000560502 PNPLA7Q6ZV29 1317 aa19.48■□□□□ 0.71
LDLR-213ENST00000560502 USP47Q96K76 1375 aa19.47■□□□□ 0.71
LDLR-213ENST00000560502 FYB1O15117 783 aa19.47■□□□□ 0.71
LDLR-213ENST00000560502 PRIM1P49642 420 aaKnown RBP19.47■□□□□ 0.71
LDLR-213ENST00000560502 ZCRB1Q8TBF4 217 aaKnown RBP19.47■□□□□ 0.71
LDLR-213ENST00000560502 SLC16A10Q8TF71 515 aa19.47■□□□□ 0.71
LDLR-213ENST00000560502 RRS1Q15050 365 aaKnown RBP19.45■□□□□ 0.7
LDLR-213ENST00000560502 NBPF6Q5VWK0 638 aa19.45■□□□□ 0.7
LDLR-213ENST00000560502 NBPF4Q96M43 638 aa19.45■□□□□ 0.7
LDLR-213ENST00000560502 TMF1P82094 1093 aa19.44■□□□□ 0.7
LDLR-213ENST00000560502 ZNF784Q8NCA9 323 aaPredicted RBP19.44■□□□□ 0.7
LDLR-213ENST00000560502 SYTL4Q96C24 671 aaPredicted RBP19.44■□□□□ 0.7
LDLR-213ENST00000560502 GGNBP2Q9H3C7 697 aa19.44■□□□□ 0.7
LDLR-213ENST00000560502 CGNL1Q0VF96 1302 aa19.44■□□□□ 0.7
LDLR-213ENST00000560502 SMG6Q86US8 1419 aaKnown RBP19.43■□□□□ 0.7
LDLR-213ENST00000560502 C5P01031 1676 aa19.43■□□□□ 0.7
LDLR-213ENST00000560502 ANKRD26Q9UPS8 1709 aa19.43■□□□□ 0.7
LDLR-213ENST00000560502 KCNQ4P56696 695 aa19.43■□□□□ 0.7
LDLR-213ENST00000560502 INSRP06213 1382 aa19.43■□□□□ 0.7
LDLR-213ENST00000560502 UTRNP46939 3433 aa19.42■□□□□ 0.7
LDLR-213ENST00000560502 PKD1L3Q7Z443 1732 aa19.42■□□□□ 0.7
LDLR-213ENST00000560502 TAF1LQ8IZX4 1826 aa19.42■□□□□ 0.7
LDLR-213ENST00000560502 KIF24Q5T7B8 1368 aa19.42■□□□□ 0.7
LDLR-213ENST00000560502 TOGARAM1Q9Y4F4 1720 aa19.42■□□□□ 0.7
LDLR-213ENST00000560502 USHBP1Q8N6Y0 703 aa19.41■□□□□ 0.7
LDLR-213ENST00000560502 FLT4P35916 1363 aa19.41■□□□□ 0.7
LDLR-213ENST00000560502 TFCP2L1Q9NZI6 479 aa19.4■□□□□ 0.7
LDLR-213ENST00000560502 ITGB4P16144 1822 aa19.39■□□□□ 0.7
LDLR-213ENST00000560502 CCNL1Q9UK58 526 aaPredicted RBP19.39■□□□□ 0.69
LDLR-213ENST00000560502 NCAPD2Q15021 1401 aa19.39■□□□□ 0.69
LDLR-213ENST00000560502 POLD1P28340 1107 aa19.38■□□□□ 0.69
LDLR-213ENST00000560502 HSP90AB2PQ58FF8 381 aa19.38■□□□□ 0.69
LDLR-213ENST00000560502 RAPGEF4Q8WZA2 1011 aa19.38■□□□□ 0.69
LDLR-213ENST00000560502 PCDH11XQ9BZA7 1347 aa19.36■□□□□ 0.69
LDLR-213ENST00000560502 PCDH11YQ9BZA8 1340 aa19.36■□□□□ 0.69
LDLR-213ENST00000560502 TATP17735 454 aaPredicted RBP19.36■□□□□ 0.69
LDLR-213ENST00000560502 CDCA8Q53HL2 280 aa19.36■□□□□ 0.69
LDLR-213ENST00000560502 CARD14Q9BXL6 1004 aa19.36■□□□□ 0.69
LDLR-213ENST00000560502 NSD3Q9BZ95 1437 aa19.35■□□□□ 0.69
LDLR-213ENST00000560502 COL23A1Q86Y22 540 aaPredicted RBP19.34■□□□□ 0.69
LDLR-213ENST00000560502 MAP2P11137 1827 aaKnown RBP19.33■□□□□ 0.69
LDLR-213ENST00000560502 CYP27B1O15528 508 aa19.33■□□□□ 0.68
LDLR-213ENST00000560502 GPR162Q16538 588 aa19.33■□□□□ 0.68
LDLR-213ENST00000560502 KLHL34Q8N239 644 aa19.33■□□□□ 0.68
LDLR-213ENST00000560502 NLGN2Q8NFZ4 835 aa19.33■□□□□ 0.68
LDLR-213ENST00000560502 C4BP0C0L5 1744 aa19.33■□□□□ 0.68
LDLR-213ENST00000560502 PALLDQ8WX93 1383 aa19.32■□□□□ 0.68
LDLR-213ENST00000560502 EMILIN1Q9Y6C2 1016 aa19.32■□□□□ 0.68
LDLR-213ENST00000560502 UBR3Q6ZT12 1888 aa19.32■□□□□ 0.68
LDLR-213ENST00000560502 MSH5O43196 834 aa19.27■□□□□ 0.68
LDLR-213ENST00000560502 NKX1-1Q15270 411 aaPredicted RBP19.27■□□□□ 0.68
LDLR-213ENST00000560502 MPRIPQ6WCQ1 1025 aa19.27■□□□□ 0.68
LDLR-213ENST00000560502 WASHC2AQ641Q2 1341 aa19.26■□□□□ 0.67
LDLR-213ENST00000560502 YBX3P16989 372 aaKnown RBP eCLIP19.26■□□□□ 0.67
LDLR-213ENST00000560502 HMGB2P26583 209 aaKnown RBP19.26■□□□□ 0.67
LDLR-213ENST00000560502 MSL1Q68DK7 614 aa19.26■□□□□ 0.67
LDLR-213ENST00000560502 EIF4G2P78344 907 aaKnown RBP eCLIP19.25■□□□□ 0.67
LDLR-213ENST00000560502 PELP1Q8IZL8 1130 aaKnown RBP19.25■□□□□ 0.67
LDLR-213ENST00000560502 FLAD1Q8NFF5 587 aa19.25■□□□□ 0.67
LDLR-213ENST00000560502 SMARCC1Q92922 1105 aaPredicted RBP19.25■□□□□ 0.67
LDLR-213ENST00000560502 C1QTNF8P60827 252 aa19.24■□□□□ 0.67
LDLR-213ENST00000560502 AMIGO3Q86WK7 504 aa19.24■□□□□ 0.67
LDLR-213ENST00000560502 PIGBQ92521 554 aa19.24■□□□□ 0.67
LDLR-213ENST00000560502 GOLGB1Q14789 3259 aaKnown RBP19.24■□□□□ 0.67
LDLR-213ENST00000560502 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.23■□□□□ 0.67
LDLR-213ENST00000560502 GRIN3BO60391 1043 aa19.22■□□□□ 0.67
LDLR-213ENST00000560502 DIEXFQ68CQ4 756 aaKnown RBP19.22■□□□□ 0.67
LDLR-213ENST00000560502 EYA1Q99502 592 aa19.22■□□□□ 0.67
LDLR-213ENST00000560502 SPG7Q9UQ90 795 aa19.22■□□□□ 0.67
LDLR-213ENST00000560502 CD2APQ9Y5K6 639 aa19.22■□□□□ 0.67
LDLR-213ENST00000560502 PLEKHG2Q9H7P9 1386 aa19.21■□□□□ 0.67
LDLR-213ENST00000560502 PPM1GO15355 546 aaPredicted RBP19.21■□□□□ 0.67
LDLR-213ENST00000560502 POLKQ9UBT6 870 aa19.21■□□□□ 0.67
LDLR-213ENST00000560502 AK7Q96M32 723 aa19.2■□□□□ 0.66
LDLR-213ENST00000560502 ZNF831Q5JPB2 1677 aa19.2■□□□□ 0.66
LDLR-213ENST00000560502 SENP3-EIF4A1A0A087X0R7 540 aa19.18■□□□□ 0.66
LDLR-213ENST00000560502 LOC102724428A0A0B4J2F2 783 aa19.18■□□□□ 0.66
LDLR-213ENST00000560502 PHKG2P15735 406 aa19.18■□□□□ 0.66
LDLR-213ENST00000560502 SIK1P57059 783 aa19.18■□□□□ 0.66
LDLR-213ENST00000560502 LINC00116Q8NCU8 138 aa19.18■□□□□ 0.66
LDLR-213ENST00000560502 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.17■□□□□ 0.66
LDLR-213ENST00000560502 GIGYF1O75420 1035 aaPredicted RBP19.17■□□□□ 0.66
LDLR-213ENST00000560502 SSFA2P28290 1259 aa19.17■□□□□ 0.66
LDLR-213ENST00000560502 HSPA5P11021 654 aaKnown RBP19.16■□□□□ 0.66
LDLR-213ENST00000560502 ITPK1Q13572 414 aa19.16■□□□□ 0.66
LDLR-213ENST00000560502 EIF4A2Q14240 407 aaKnown RBP19.16■□□□□ 0.66
LDLR-213ENST00000560502 SMIM5Q71RC9 77 aa19.16■□□□□ 0.66
LDLR-213ENST00000560502 IFNL2Q8IZJ0 200 aa19.16■□□□□ 0.66
LDLR-213ENST00000560502 TMOD3Q9NYL9 352 aa19.16■□□□□ 0.66
LDLR-213ENST00000560502 COL5A3P25940 1745 aaPredicted RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms