RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 HSPA1LP34931 641 aa14.62□□□□□ -0.07
USP3-218ENST00000560202 DCTN1Q14203 1278 aa14.62□□□□□ -0.07
USP3-218ENST00000560202 SUPT16HQ9Y5B9 1047 aaKnown RBP14.62□□□□□ -0.07
USP3-218ENST00000560202 HTATSF1O43719 755 aaKnown RBP14.61□□□□□ -0.07
USP3-218ENST00000560202 LARP1Q6PKG0 1096 aaKnown RBP14.61□□□□□ -0.07
USP3-218ENST00000560202 RTF1Q92541 710 aaKnown RBP14.61□□□□□ -0.07
USP3-218ENST00000560202 CARD10Q9BWT7 1032 aa14.61□□□□□ -0.07
USP3-218ENST00000560202 GNAT3A8MTJ3 354 aa14.61□□□□□ -0.07
USP3-218ENST00000560202 TATP17735 454 aaPredicted RBP14.61□□□□□ -0.07
USP3-218ENST00000560202 MCM10Q7L590 875 aa14.61□□□□□ -0.07
USP3-218ENST00000560202 RCAN3Q9UKA8 241 aa14.6□□□□□ -0.07
USP3-218ENST00000560202 SPATA31A6Q5VVP1 1343 aa14.6□□□□□ -0.07
USP3-218ENST00000560202 MAP3K5Q99683 1374 aa14.6□□□□□ -0.07
USP3-218ENST00000560202 PLEKHG2Q9H7P9 1386 aa14.6□□□□□ -0.07
USP3-218ENST00000560202 DLG5Q8TDM6 1919 aa14.6□□□□□ -0.07
USP3-218ENST00000560202 ZNF530Q6P9A1 599 aaPredicted RBP14.59□□□□□ -0.07
USP3-218ENST00000560202 IFT57Q9NWB7 429 aa14.59□□□□□ -0.07
USP3-218ENST00000560202 FANCIQ9NVI1 1328 aa14.59□□□□□ -0.07
USP3-218ENST00000560202 CRB1P82279 1406 aa14.59□□□□□ -0.07
USP3-218ENST00000560202 MEGF6O75095 1541 aa14.59□□□□□ -0.07
USP3-218ENST00000560202 ZNF853P0CG23 659 aa14.58□□□□□ -0.07
USP3-218ENST00000560202 GNAI1P63096 354 aa14.58□□□□□ -0.07
USP3-218ENST00000560202 TSR2Q969E8 191 aaKnown RBP14.58□□□□□ -0.07
USP3-218ENST00000560202 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.58□□□□□ -0.072e-7■□□□□ 10.1
USP3-218ENST00000560202 LAS1LQ9Y4W2 734 aaKnown RBP14.58□□□□□ -0.07
USP3-218ENST00000560202 AKAP4Q5JQC9 854 aa14.58□□□□□ -0.08
USP3-218ENST00000560202 CFAP44Q96MT7 982 aa14.58□□□□□ -0.08
USP3-218ENST00000560202 SPG7Q9UQ90 795 aa14.58□□□□□ -0.08
USP3-218ENST00000560202 C1orf141Q5JVX7 400 aa14.57□□□□□ -0.08
USP3-218ENST00000560202 IL17REQ8NFR9 667 aa14.57□□□□□ -0.08
USP3-218ENST00000560202 OVOS2A0A0G2JMS6 1433 aa14.55□□□□□ -0.08
USP3-218ENST00000560202 IL2RBP14784 551 aa14.55□□□□□ -0.08
USP3-218ENST00000560202 USP35Q9P2H5 1018 aa14.55□□□□□ -0.08
USP3-218ENST00000560202 SLIT2O94813 1529 aa14.55□□□□□ -0.08
USP3-218ENST00000560202 EXOSC9Q06265 439 aaKnown RBP14.55□□□□□ -0.08
USP3-218ENST00000560202 MBIPQ9NS73 344 aa14.55□□□□□ -0.08
USP3-218ENST00000560202 PLCH1Q4KWH8 1693 aa14.54□□□□□ -0.08
USP3-218ENST00000560202 RNF123Q5XPI4 1314 aa14.54□□□□□ -0.08
USP3-218ENST00000560202 CHL1O00533 1208 aa14.54□□□□□ -0.08
USP3-218ENST00000560202 NGLY1Q96IV0 654 aa14.54□□□□□ -0.08
USP3-218ENST00000560202 C8orf37Q96NL8 207 aa14.54□□□□□ -0.08
USP3-218ENST00000560202 CEMIPQ8WUJ3 1361 aa14.53□□□□□ -0.08
USP3-218ENST00000560202 PHKG2P15735 406 aa14.53□□□□□ -0.08
USP3-218ENST00000560202 MPRIPQ6WCQ1 1025 aa14.53□□□□□ -0.08
USP3-218ENST00000560202 IFNL2Q8IZJ0 200 aa14.53□□□□□ -0.08
USP3-218ENST00000560202 LGR6Q9HBX8 967 aa14.53□□□□□ -0.08
USP3-218ENST00000560202 LRP6O75581 1613 aa14.53□□□□□ -0.08
USP3-218ENST00000560202 NEFLP07196 543 aa14.52□□□□□ -0.08
USP3-218ENST00000560202 CT47B1P0C2W7 299 aaPredicted RBP14.52□□□□□ -0.08
USP3-218ENST00000560202 ZCRB1Q8TBF4 217 aaKnown RBP14.52□□□□□ -0.08
USP3-218ENST00000560202 CYP27B1O15528 508 aa14.52□□□□□ -0.09
USP3-218ENST00000560202 RNMTO43148 476 aaKnown RBP14.52□□□□□ -0.09
USP3-218ENST00000560202 UNC5CLQ8IV45 518 aa14.52□□□□□ -0.09
USP3-218ENST00000560202 NRAPQ86VF7 1730 aa14.52□□□□□ -0.09
USP3-218ENST00000560202 LRRC37A3O60309 1634 aa14.51□□□□□ -0.09
USP3-218ENST00000560202 SPATA31A1Q5TZJ5 1347 aa14.51□□□□□ -0.09
USP3-218ENST00000560202 PARP4Q9UKK3 1724 aaKnown RBP14.51□□□□□ -0.09
USP3-218ENST00000560202 TAF7Q15545 349 aaPredicted RBP14.51□□□□□ -0.09
USP3-218ENST00000560202 FNBP4Q8N3X1 1017 aaPredicted RBP14.51□□□□□ -0.09
USP3-218ENST00000560202 PKD1L3Q7Z443 1732 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 NWD2Q9ULI1 1742 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 PCDH11XQ9BZA7 1347 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 PCDH11YQ9BZA8 1340 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 RRP1P56182 461 aaKnown RBP14.5□□□□□ -0.09
USP3-218ENST00000560202 BABAM1Q9NWV8 329 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 MIS18AQ9NYP9 233 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 TSPYL4Q9UJ04 414 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 SPATA31A5Q5VU36 1347 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 SPATA31A7Q8IWB4 1347 aa14.5□□□□□ -0.09
USP3-218ENST00000560202 DISP2A7MBM2 1401 aa14.49□□□□□ -0.09
USP3-218ENST00000560202 HSP90AB1P08238 724 aaKnown RBP14.49□□□□□ -0.09
USP3-218ENST00000560202 RARSP54136 660 aaKnown RBP14.49□□□□□ -0.09
USP3-218ENST00000560202 TEFQ10587 303 aa14.49□□□□□ -0.09
USP3-218ENST00000560202 MEX3CQ5U5Q3 659 aaKnown RBP14.49□□□□□ -0.09
USP3-218ENST00000560202 THRAP3Q9Y2W1 955 aaKnown RBP14.49□□□□□ -0.09
USP3-218ENST00000560202 BCL9LQ86UU0 1499 aa14.49□□□□□ -0.09
USP3-218ENST00000560202 FKBP8Q14318 412 aa14.49□□□□□ -0.09
USP3-218ENST00000560202 CCDC9Q9Y3X0 531 aaKnown RBP14.49□□□□□ -0.09
USP3-218ENST00000560202 BCAR3O75815 825 aa14.48□□□□□ -0.09
USP3-218ENST00000560202 C8orf58Q8NAV2 365 aa14.48□□□□□ -0.09
USP3-218ENST00000560202 DCAF5Q96JK2 942 aa14.48□□□□□ -0.09
USP3-218ENST00000560202 ANP32EQ9BTT0 268 aa14.48□□□□□ -0.09
USP3-218ENST00000560202 KDM6AO15550 1401 aaPredicted RBP14.47□□□□□ -0.09
USP3-218ENST00000560202 IRX6P78412 446 aaPredicted RBP14.47□□□□□ -0.09
USP3-218ENST00000560202 VPS72Q15906 364 aa14.47□□□□□ -0.09
USP3-218ENST00000560202 TWISTNBQ3B726 338 aaPredicted RBP14.47□□□□□ -0.09
USP3-218ENST00000560202 TSPYL6Q8N831 410 aa14.47□□□□□ -0.09
USP3-218ENST00000560202 DDX54Q8TDD1 881 aaKnown RBP14.47□□□□□ -0.09
USP3-218ENST00000560202 CDCA7Q9BWT1 371 aaPredicted RBP14.47□□□□□ -0.09
USP3-218ENST00000560202 USP21Q9UK80 565 aa14.47□□□□□ -0.09
USP3-218ENST00000560202 ADAMTS7Q9UKP4 1686 aa14.47□□□□□ -0.09
USP3-218ENST00000560202 ELL2O00472 640 aaPredicted RBP14.46□□□□□ -0.09
USP3-218ENST00000560202 VAMP4O75379 141 aa14.46□□□□□ -0.09
USP3-218ENST00000560202 ZNF428Q96B54 188 aa14.46□□□□□ -0.09
USP3-218ENST00000560202 PLIN1O60240 522 aa14.46□□□□□ -0.1
USP3-218ENST00000560202 NKX1-1Q15270 411 aaPredicted RBP14.46□□□□□ -0.1
USP3-218ENST00000560202 BARGINQ6ZT62 677 aa14.46□□□□□ -0.1
USP3-218ENST00000560202 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.46□□□□□ -0.1
USP3-218ENST00000560202 BTBD11A6QL63 1104 aa14.45□□□□□ -0.1
USP3-218ENST00000560202 EXOC5O00471 708 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 128.1 ms