RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 PARP4Q9UKK3 1724 aaKnown RBP21.85■■□□□ 1.09
TPM1-219ENST00000559397 CCDC146Q8IYE0 955 aa21.85■■□□□ 1.09
TPM1-219ENST00000559397 OVOS2A0A0G2JMS6 1433 aa21.84■■□□□ 1.09
TPM1-219ENST00000559397 TATP17735 454 aaPredicted RBP21.84■■□□□ 1.09
TPM1-219ENST00000559397 PHACTR3Q96KR7 559 aa21.84■■□□□ 1.09
TPM1-219ENST00000559397 PLEKHG2Q9H7P9 1386 aa21.84■■□□□ 1.09
TPM1-219ENST00000559397 FAM98CQ17RN3 349 aaKnown RBP21.83■■□□□ 1.09
TPM1-219ENST00000559397 RUNDC1Q96C34 613 aa21.83■■□□□ 1.09
TPM1-219ENST00000559397 POTEAQ6S8J7 498 aa21.82■■□□□ 1.08
TPM1-219ENST00000559397 CDCA7Q9BWT1 371 aaPredicted RBP21.82■■□□□ 1.08
TPM1-219ENST00000559397 PKD1L3Q7Z443 1732 aa21.82■■□□□ 1.08
TPM1-219ENST00000559397 ONECUT3O60422 494 aaPredicted RBP21.82■■□□□ 1.08
TPM1-219ENST00000559397 THSD7AQ9UPZ6 1657 aa21.82■■□□□ 1.08
TPM1-219ENST00000559397 RBM6P78332 1123 aaKnown RBP21.81■■□□□ 1.08
TPM1-219ENST00000559397 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.8■■□□□ 1.085e-8■■■■□ 19.9
TPM1-219ENST00000559397 SHANK3Q9BYB0 1731 aa21.8■■□□□ 1.08
TPM1-219ENST00000559397 MTHFSDQ2M296 383 aaKnown RBP21.79■■□□□ 1.08
TPM1-219ENST00000559397 AMOTQ4VCS5 1084 aa21.79■■□□□ 1.08
TPM1-219ENST00000559397 PLEKHO1Q53GL0 409 aaPredicted RBP21.79■■□□□ 1.08
TPM1-219ENST00000559397 MAPK8IP3Q9UPT6 1336 aa21.78■■□□□ 1.08
TPM1-219ENST00000559397 LRRC37A3O60309 1634 aa21.78■■□□□ 1.08
TPM1-219ENST00000559397 NEFMP07197 916 aa21.77■■□□□ 1.08
TPM1-219ENST00000559397 ZCRB1Q8TBF4 217 aaKnown RBP21.77■■□□□ 1.08
TPM1-219ENST00000559397 RXRBP28702 533 aa21.76■■□□□ 1.07
TPM1-219ENST00000559397 SPG7Q9UQ90 795 aa21.76■■□□□ 1.07
TPM1-219ENST00000559397 TNS2Q63HR2 1409 aa21.76■■□□□ 1.07
TPM1-219ENST00000559397 SENP3-EIF4A1A0A087X0R7 540 aa21.75■■□□□ 1.07
TPM1-219ENST00000559397 APAF1O14727 1248 aa21.75■■□□□ 1.07
TPM1-219ENST00000559397 PDE3BQ13370 1112 aa21.75■■□□□ 1.07
TPM1-219ENST00000559397 EXOC5O00471 708 aa21.75■■□□□ 1.07
TPM1-219ENST00000559397 TMPOP42166 694 aaKnown RBP21.75■■□□□ 1.07
TPM1-219ENST00000559397 NFE2L2Q16236 605 aa21.75■■□□□ 1.07
TPM1-219ENST00000559397 GAS2L2Q8NHY3 880 aa21.75■■□□□ 1.07
TPM1-219ENST00000559397 DDB1Q16531 1140 aa21.74■■□□□ 1.07
TPM1-219ENST00000559397 SEPT12Q8IYM1 358 aa21.74■■□□□ 1.07
TPM1-219ENST00000559397 DLG5Q8TDM6 1919 aa21.73■■□□□ 1.07
TPM1-219ENST00000559397 CYP27B1O15528 508 aa21.73■■□□□ 1.07
TPM1-219ENST00000559397 ZNF530Q6P9A1 599 aaPredicted RBP21.72■■□□□ 1.07
TPM1-219ENST00000559397 PCDH11XQ9BZA7 1347 aa21.72■■□□□ 1.07
TPM1-219ENST00000559397 PCDH11YQ9BZA8 1340 aa21.72■■□□□ 1.07
TPM1-219ENST00000559397 NGEFQ8N5V2 710 aa21.72■■□□□ 1.07
TPM1-219ENST00000559397 RRP7AQ9Y3A4 280 aaKnown RBP21.72■■□□□ 1.07
TPM1-219ENST00000559397 PHKG2P15735 406 aa21.71■■□□□ 1.07
TPM1-219ENST00000559397 ZNF521Q96K83 1311 aa21.7■■□□□ 1.06
TPM1-219ENST00000559397 A0A0G2JS52 829 aa21.7■■□□□ 1.06
TPM1-219ENST00000559397 MYT1Q01538 1121 aa21.7■■□□□ 1.06
TPM1-219ENST00000559397 AKAP4Q5JQC9 854 aa21.7■■□□□ 1.06
TPM1-219ENST00000559397 IFNL2Q8IZJ0 200 aa21.7■■□□□ 1.06
TPM1-219ENST00000559397 RIPK4P57078 832 aa21.69■■□□□ 1.06
TPM1-219ENST00000559397 DDX54Q8TDD1 881 aaKnown RBP21.69■■□□□ 1.06
TPM1-219ENST00000559397 SALL2Q9Y467 1007 aaPredicted RBP21.69■■□□□ 1.06
TPM1-219ENST00000559397 RGS12O14924 1447 aa21.69■■□□□ 1.06
TPM1-219ENST00000559397 BRWD3Q6RI45 1802 aa21.69■■□□□ 1.06
TPM1-219ENST00000559397 NCBP3Q53F19 620 aaKnown RBP21.69■■□□□ 1.06
TPM1-219ENST00000559397 MAP3K5Q99683 1374 aa21.68■■□□□ 1.06
TPM1-219ENST00000559397 NEUROD2Q15784 382 aa21.68■■□□□ 1.06
TPM1-219ENST00000559397 C1orf141Q5JVX7 400 aa21.68■■□□□ 1.06
TPM1-219ENST00000559397 MARCH10Q8NA82 808 aaPredicted RBP21.68■■□□□ 1.06
TPM1-219ENST00000559397 GNAT3A8MTJ3 354 aa21.67■■□□□ 1.06
TPM1-219ENST00000559397 NKX1-1Q15270 411 aaPredicted RBP21.67■■□□□ 1.06
TPM1-219ENST00000559397 TRIM35Q9UPQ4 493 aa21.67■■□□□ 1.06
TPM1-219ENST00000559397 ADAMTS7Q9UKP4 1686 aa21.66■■□□□ 1.06
TPM1-219ENST00000559397 VIRMAQ69YN4 1812 aaKnown RBP21.65■■□□□ 1.06
TPM1-219ENST00000559397 HTATSF1O43719 755 aaKnown RBP21.65■■□□□ 1.06
TPM1-219ENST00000559397 CCDC27Q2M243 656 aa21.65■■□□□ 1.06
TPM1-219ENST00000559397 SUPT16HQ9Y5B9 1047 aaKnown RBP21.65■■□□□ 1.06
TPM1-219ENST00000559397 KDM6AO15550 1401 aaPredicted RBP21.64■■□□□ 1.06
TPM1-219ENST00000559397 HSP90AB1P08238 724 aaKnown RBP21.64■■□□□ 1.05
TPM1-219ENST00000559397 IL17REQ8NFR9 667 aa21.64■■□□□ 1.05
TPM1-219ENST00000559397 SCN11AQ9UI33 1791 aa21.64■■□□□ 1.05
TPM1-219ENST00000559397 MPRIPQ6WCQ1 1025 aa21.63■■□□□ 1.05
TPM1-219ENST00000559397 LMOD3Q0VAK6 560 aa21.63■■□□□ 1.05
TPM1-219ENST00000559397 DCTN1Q14203 1278 aa21.63■■□□□ 1.05
TPM1-219ENST00000559397 KRT27Q7Z3Y8 459 aa21.63■■□□□ 1.05
TPM1-219ENST00000559397 CDCA7LQ96GN5 454 aa21.63■■□□□ 1.05
TPM1-219ENST00000559397 LGR6Q9HBX8 967 aa21.63■■□□□ 1.05
TPM1-219ENST00000559397 MCM10Q7L590 875 aa21.62■■□□□ 1.05
TPM1-219ENST00000559397 RTF1Q92541 710 aaKnown RBP21.62■■□□□ 1.05
TPM1-219ENST00000559397 DCAF5Q96JK2 942 aa21.62■■□□□ 1.05
TPM1-219ENST00000559397 CEMIPQ8WUJ3 1361 aa21.61■■□□□ 1.05
TPM1-219ENST00000559397 RNMTO43148 476 aaKnown RBP21.61■■□□□ 1.05
TPM1-219ENST00000559397 WWC1Q8IX03 1113 aa21.61■■□□□ 1.05
TPM1-219ENST00000559397 TOGARAM1Q9Y4F4 1720 aa21.61■■□□□ 1.05
TPM1-219ENST00000559397 BCL9O00512 1426 aa21.6■■□□□ 1.05
TPM1-219ENST00000559397 THUMPD2Q9BTF0 503 aaKnown RBP21.6■■□□□ 1.05
TPM1-219ENST00000559397 FAM182BQ5T319 152 aa21.59■■□□□ 1.05
TPM1-219ENST00000559397 NEFLP07196 543 aa21.58■■□□□ 1.05
TPM1-219ENST00000559397 GOLGA2Q08379 1002 aa21.58■■□□□ 1.05
TPM1-219ENST00000559397 RNF123Q5XPI4 1314 aa21.58■■□□□ 1.04
TPM1-219ENST00000559397 DOT1LQ8TEK3 1739 aa21.57■■□□□ 1.04
TPM1-219ENST00000559397 MRC1P22897 1456 aa21.57■■□□□ 1.04
TPM1-219ENST00000559397 EP400Q96L91 3159 aa21.57■■□□□ 1.04
TPM1-219ENST00000559397 TRMT2AQ8IZ69 625 aaKnown RBP21.56■■□□□ 1.04
TPM1-219ENST00000559397 SIPA1L3O60292 1781 aaPredicted RBP21.56■■□□□ 1.04
TPM1-219ENST00000559397 ERVV-2B6SEH9 535 aa21.56■■□□□ 1.04
TPM1-219ENST00000559397 FKBP8Q14318 412 aa21.56■■□□□ 1.04
TPM1-219ENST00000559397 ITGB4P16144 1822 aa21.55■■□□□ 1.04
TPM1-219ENST00000559397 SLFN5Q08AF3 891 aa21.55■■□□□ 1.04
TPM1-219ENST00000559397 SBF2Q86WG5 1849 aa21.55■■□□□ 1.04
TPM1-219ENST00000559397 WDR63Q8IWG1 891 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms