RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 USP17L18D6R9N7 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L22D6RA61 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L17D6RBQ6 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L19D6RCP7 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L20D6RJB6 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 F12P00748 615 aaPredicted RBP5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L24Q0WX57 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 PHLDB3Q6NSJ2 640 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 PLEKHM2Q8IWE5 1019 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 KRTAP4-9Q9BYQ8 210 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 KRTAP4-2Q9BYR5 136 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 IGSF3O75054 1194 aa5.17□□□□□ -1.58
TRAV28-201ENST00000557548 CRTC2Q53ET0 693 aaPredicted RBP5.17□□□□□ -1.58
TRAV28-201ENST00000557548 TXNDC2Q86VQ3 553 aa5.17□□□□□ -1.58
TRAV28-201ENST00000557548 CCER1Q8TC90 406 aaPredicted RBP5.17□□□□□ -1.58
TRAV28-201ENST00000557548 USB1Q9BQ65 265 aaKnown RBP5.17□□□□□ -1.58
TRAV28-201ENST00000557548 KRTAP17-1Q9BYP8 105 aa5.17□□□□□ -1.58
TRAV28-201ENST00000557548 MKRN1Q9UHC7 482 aaKnown RBP5.17□□□□□ -1.58
TRAV28-201ENST00000557548 ZC3H4Q9UPT8 1303 aaKnown RBP5.17□□□□□ -1.58
TRAV28-201ENST00000557548 FAM196BA6NMK8 535 aa5.16□□□□□ -1.58
TRAV28-201ENST00000557548 JUNDP17535 347 aa5.16□□□□□ -1.58
TRAV28-201ENST00000557548 CTHP32929 405 aa5.16□□□□□ -1.58
TRAV28-201ENST00000557548 NCOA4Q13772 614 aa5.16□□□□□ -1.58
TRAV28-201ENST00000557548 BRICD5Q6PL45 260 aa5.16□□□□□ -1.58
TRAV28-201ENST00000557548 HPS1Q92902 700 aa5.16□□□□□ -1.58
TRAV28-201ENST00000557548 SLAIN2Q9P270 581 aa5.16□□□□□ -1.58
TRAV28-201ENST00000557548 RASA1P20936 1047 aa5.15□□□□□ -1.59
TRAV28-201ENST00000557548 PTPRNQ16849 979 aa5.15□□□□□ -1.59
TRAV28-201ENST00000557548 PLA2G4EQ3MJ16 856 aa5.15□□□□□ -1.59
TRAV28-201ENST00000557548 SLFNL1Q499Z3 407 aa5.15□□□□□ -1.59
TRAV28-201ENST00000557548 LARP1Q6PKG0 1096 aaKnown RBP5.15□□□□□ -1.59
TRAV28-201ENST00000557548 GALNT6Q8NCL4 622 aa5.15□□□□□ -1.59
TRAV28-201ENST00000557548 UNCXA6NJT0 531 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 FMNL1O95466 1100 aaPredicted RBP5.14□□□□□ -1.59
TRAV28-201ENST00000557548 SSFA2P28290 1259 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 FAM69CQ0P6D2 419 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 PTK7Q13308 1070 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 RNF135Q8IUD6 432 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 PLPP7Q8NBV4 271 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 FAM200AQ8TCP9 573 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 SCARF2Q96GP6 870 aaPredicted RBP5.14□□□□□ -1.59
TRAV28-201ENST00000557548 CEP126Q9P2H0 1117 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 PCDHB9Q9Y5E1 797 aa5.14□□□□□ -1.59
TRAV28-201ENST00000557548 ATP5J2-PTCD1G3V325 749 aa5.13□□□□□ -1.59
TRAV28-201ENST00000557548 J3QL48 77 aa5.13□□□□□ -1.59
TRAV28-201ENST00000557548 WNT7AO00755 349 aa5.13□□□□□ -1.59
TRAV28-201ENST00000557548 ARID4AP29374 1257 aaPredicted RBP5.13□□□□□ -1.59
TRAV28-201ENST00000557548 MARSP56192 900 aaKnown RBP5.13□□□□□ -1.59
TRAV28-201ENST00000557548 KCNH2Q12809 1159 aa5.13□□□□□ -1.59
TRAV28-201ENST00000557548 SCUBE3Q8IX30 993 aa5.13□□□□□ -1.59
TRAV28-201ENST00000557548 CLP1Q92989 425 aaKnown RBP5.13□□□□□ -1.59
TRAV28-201ENST00000557548 THAP11Q96EK4 314 aa5.13□□□□□ -1.59
TRAV28-201ENST00000557548 OCSTAMPQ9BR26 566 aa5.13□□□□□ -1.59
TRAV28-201ENST00000557548 SALL2Q9Y467 1007 aaPredicted RBP5.13□□□□□ -1.59
TRAV28-201ENST00000557548 LOC105371045A0A1W2PR82 267 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 SOWAHDA6NJG2 315 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 NR1I2O75469 434 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 PROCP04070 461 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 CCNYL3P0C7X3 344 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 ATP2B4P23634 1241 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 SCNN1AP37088 669 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 SERPINB4P48594 390 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 PTK2Q05397 1052 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 ANKMY2Q8IV38 441 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 PHTF2Q8N3S3 785 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 ZNF594Q96JF6 807 aaPredicted RBP5.12□□□□□ -1.59
TRAV28-201ENST00000557548 CDCA7Q9BWT1 371 aaPredicted RBP5.12□□□□□ -1.59
TRAV28-201ENST00000557548 GPSM3Q9Y4H4 160 aa5.12□□□□□ -1.59
TRAV28-201ENST00000557548 RBM47A0AV96 593 aaKnown RBP5.11□□□□□ -1.59
TRAV28-201ENST00000557548 DPYDQ12882 1025 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 EML3Q32P44 896 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 NBPF14Q5TI25 921 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 PDXDC2PQ6P474 469 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 DNAJC14Q6Y2X3 702 aaPredicted RBP5.11□□□□□ -1.59
TRAV28-201ENST00000557548 OGFOD1Q8N543 542 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 ARMC2Q8NEN0 867 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 ZNF592Q92610 1267 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 NUDT12Q9BQG2 462 aa5.11□□□□□ -1.59
TRAV28-201ENST00000557548 DXOO77932 396 aaKnown RBP5.1□□□□□ -1.59
TRAV28-201ENST00000557548 CLDN10P78369 228 aa5.1□□□□□ -1.59
TRAV28-201ENST00000557548 TRIM46Q7Z4K8 759 aa5.1□□□□□ -1.59
TRAV28-201ENST00000557548 SVOPQ8N4V2 548 aa5.1□□□□□ -1.59
TRAV28-201ENST00000557548 ADAM32Q8TC27 787 aa5.1□□□□□ -1.59
TRAV28-201ENST00000557548 GPKOWQ92917 476 aaPredicted RBP eCLIP5.1□□□□□ -1.59
TRAV28-201ENST00000557548 ARHGAP9Q9BRR9 750 aa5.1□□□□□ -1.59
TRAV28-201ENST00000557548 PRDM9Q9NQV7 894 aa5.1□□□□□ -1.59
TRAV28-201ENST00000557548 LZTS3O60299 673 aaPredicted RBP5.09□□□□□ -1.59
TRAV28-201ENST00000557548 MCCD1P59942 119 aaPredicted RBP5.09□□□□□ -1.59
TRAV28-201ENST00000557548 SWI5Q1ZZU3 235 aa5.09□□□□□ -1.59
TRAV28-201ENST00000557548 MAP7D1Q3KQU3 841 aa5.09□□□□□ -1.59
TRAV28-201ENST00000557548 TSGA10IPQ3SY00 556 aa5.09□□□□□ -1.59
TRAV28-201ENST00000557548 MSS51Q4VC12 460 aa5.09□□□□□ -1.59
TRAV28-201ENST00000557548 NOM1Q5C9Z4 860 aaKnown RBP5.09□□□□□ -1.59
TRAV28-201ENST00000557548 ZNF385CQ66K41 422 aaPredicted RBP5.09□□□□□ -1.59
TRAV28-201ENST00000557548 TRIM50Q86XT4 487 aa5.09□□□□□ -1.59
TRAV28-201ENST00000557548 EVA1BQ9NVM1 165 aa5.09□□□□□ -1.59
TRAV28-201ENST00000557548 DNAAF2Q9NVR5 837 aaKnown RBP5.09□□□□□ -1.59
TRAV28-201ENST00000557548 BIN2Q9UBW5 565 aaPredicted RBP5.09□□□□□ -1.59
TRAV28-201ENST00000557548 CHIC2Q9UKJ5 165 aa5.09□□□□□ -1.59
TRAV28-201ENST00000557548 NOD1Q9Y239 953 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms