RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 OVOS2A0A0G2JMS6 1433 aa17.11■□□□□ 0.33
SHMT2-227ENST00000557269 FCHSD2O94868 740 aa17.1■□□□□ 0.33
SHMT2-227ENST00000557269 PRKAR2BP31323 418 aa17.1■□□□□ 0.33
SHMT2-227ENST00000557269 WDR43Q15061 677 aaKnown RBP eCLIP17.1■□□□□ 0.33
SHMT2-227ENST00000557269 PHACTR3Q96KR7 559 aa17.1■□□□□ 0.33
SHMT2-227ENST00000557269 CDCA7Q9BWT1 371 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-227ENST00000557269 LRRC37A3O60309 1634 aa17.1■□□□□ 0.33
SHMT2-227ENST00000557269 PLEKHF1Q96S99 279 aa17.09■□□□□ 0.33
SHMT2-227ENST00000557269 PARP4Q9UKK3 1724 aaKnown RBP17.09■□□□□ 0.33
SHMT2-227ENST00000557269 DDB1Q16531 1140 aa17.08■□□□□ 0.32
SHMT2-227ENST00000557269 CCDC146Q8IYE0 955 aa17.08■□□□□ 0.32
SHMT2-227ENST00000557269 ZCRB1Q8TBF4 217 aaKnown RBP17.08■□□□□ 0.32
SHMT2-227ENST00000557269 BRWD3Q6RI45 1802 aa17.07■□□□□ 0.32
SHMT2-227ENST00000557269 EXOC5O00471 708 aa17.07■□□□□ 0.32
SHMT2-227ENST00000557269 SHANK3Q9BYB0 1731 aa17.07■□□□□ 0.32
SHMT2-227ENST00000557269 TNS2Q63HR2 1409 aa17.06■□□□□ 0.32
SHMT2-227ENST00000557269 MTHFSDQ2M296 383 aaKnown RBP17.06■□□□□ 0.32
SHMT2-227ENST00000557269 FAM182BQ5T319 152 aa17.06■□□□□ 0.32
SHMT2-227ENST00000557269 FAM9BQ8IZU0 186 aa17.06■□□□□ 0.32
SHMT2-227ENST00000557269 MARCH10Q8NA82 808 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-227ENST00000557269 PKD1L3Q7Z443 1732 aa17.06■□□□□ 0.32
SHMT2-227ENST00000557269 CYP27B1O15528 508 aa17.05■□□□□ 0.32
SHMT2-227ENST00000557269 PLEKHO1Q53GL0 409 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-227ENST00000557269 DDX54Q8TDD1 881 aaKnown RBP17.05■□□□□ 0.32
SHMT2-227ENST00000557269 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHMT2-227ENST00000557269 SPG7Q9UQ90 795 aa17.04■□□□□ 0.32
SHMT2-227ENST00000557269 PDE3BQ13370 1112 aa17.03■□□□□ 0.32
SHMT2-227ENST00000557269 KRT27Q7Z3Y8 459 aa17.03■□□□□ 0.32
SHMT2-227ENST00000557269 SENP3-EIF4A1A0A087X0R7 540 aa17.02■□□□□ 0.32
SHMT2-227ENST00000557269 AMOTQ4VCS5 1084 aa17.02■□□□□ 0.32
SHMT2-227ENST00000557269 ZNF530Q6P9A1 599 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-227ENST00000557269 ILDR2Q71H61 639 aa17.02■□□□□ 0.32
SHMT2-227ENST00000557269 RUNDC1Q96C34 613 aa17.02■□□□□ 0.32
SHMT2-227ENST00000557269 PLEKHG2Q9H7P9 1386 aa17.02■□□□□ 0.31
SHMT2-227ENST00000557269 PCDH11XQ9BZA7 1347 aa17.01■□□□□ 0.31
SHMT2-227ENST00000557269 PCDH11YQ9BZA8 1340 aa17.01■□□□□ 0.31
SHMT2-227ENST00000557269 PHKG2P15735 406 aa17.01■□□□□ 0.31
SHMT2-227ENST00000557269 PNNQ9H307 717 aaKnown RBP17■□□□□ 0.31
SHMT2-227ENST00000557269 RRP7AQ9Y3A4 280 aaKnown RBP16.99■□□□□ 0.31
SHMT2-227ENST00000557269 MAPK8IP3Q9UPT6 1336 aa16.98■□□□□ 0.31
SHMT2-227ENST00000557269 APAF1O14727 1248 aa16.98■□□□□ 0.31
SHMT2-227ENST00000557269 IFNL2Q8IZJ0 200 aa16.98■□□□□ 0.31
SHMT2-227ENST00000557269 GAS2L2Q8NHY3 880 aa16.98■□□□□ 0.31
SHMT2-227ENST00000557269 TMPOP42166 694 aaKnown RBP16.97■□□□□ 0.31
SHMT2-227ENST00000557269 NKX1-1Q15270 411 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-227ENST00000557269 NFE2L2Q16236 605 aa16.97■□□□□ 0.31
SHMT2-227ENST00000557269 AKAP4Q5JQC9 854 aa16.97■□□□□ 0.31
SHMT2-227ENST00000557269 MPRIPQ6WCQ1 1025 aa16.97■□□□□ 0.31
SHMT2-227ENST00000557269 NEFMP07197 916 aa16.96■□□□□ 0.31
SHMT2-227ENST00000557269 C1orf141Q5JVX7 400 aa16.96■□□□□ 0.31
SHMT2-227ENST00000557269 LGR6Q9HBX8 967 aa16.96■□□□□ 0.31
SHMT2-227ENST00000557269 KDM6AO15550 1401 aaPredicted RBP16.96■□□□□ 0.3
SHMT2-227ENST00000557269 MAP3K5Q99683 1374 aa16.95■□□□□ 0.3
SHMT2-227ENST00000557269 PTF1AQ7RTS3 328 aa16.95■□□□□ 0.3
SHMT2-227ENST00000557269 ACSBG1Q96GR2 724 aa16.95■□□□□ 0.3
SHMT2-227ENST00000557269 TOGARAM1Q9Y4F4 1720 aa16.94■□□□□ 0.3
SHMT2-227ENST00000557269 GNAT3A8MTJ3 354 aa16.94■□□□□ 0.3
SHMT2-227ENST00000557269 RIPK4P57078 832 aa16.94■□□□□ 0.3
SHMT2-227ENST00000557269 DCTN1Q14203 1278 aa16.94■□□□□ 0.3
SHMT2-227ENST00000557269 NEUROD2Q15784 382 aa16.94■□□□□ 0.3
SHMT2-227ENST00000557269 IL17REQ8NFR9 667 aa16.94■□□□□ 0.3
SHMT2-227ENST00000557269 KCNQ2O43526 872 aa16.93■□□□□ 0.3
SHMT2-227ENST00000557269 FAM196AQ6ZSG2 479 aa16.93■□□□□ 0.3
SHMT2-227ENST00000557269 MCM10Q7L590 875 aa16.93■□□□□ 0.3
SHMT2-227ENST00000557269 DCAF5Q96JK2 942 aa16.93■□□□□ 0.3
SHMT2-227ENST00000557269 DLG5Q8TDM6 1919 aa16.93■□□□□ 0.3
SHMT2-227ENST00000557269 BCL9O00512 1426 aa16.93■□□□□ 0.3
SHMT2-227ENST00000557269 RNMTO43148 476 aaKnown RBP16.92■□□□□ 0.3
SHMT2-227ENST00000557269 PRIM1P49642 420 aaKnown RBP16.92■□□□□ 0.3
SHMT2-227ENST00000557269 THUMPD2Q9BTF0 503 aaKnown RBP16.92■□□□□ 0.3
SHMT2-227ENST00000557269 TRIM35Q9UPQ4 493 aa16.92■□□□□ 0.3
SHMT2-227ENST00000557269 DOT1LQ8TEK3 1739 aa16.91■□□□□ 0.3
SHMT2-227ENST00000557269 HSP90AB1P08238 724 aaKnown RBP16.91■□□□□ 0.3
SHMT2-227ENST00000557269 ADAMTS7Q9UKP4 1686 aa16.91■□□□□ 0.3
SHMT2-227ENST00000557269 TRIM37O94972 964 aa16.9■□□□□ 0.3
SHMT2-227ENST00000557269 SALL2Q9Y467 1007 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-227ENST00000557269 SCN11AQ9UI33 1791 aa16.89■□□□□ 0.3
SHMT2-227ENST00000557269 SBF2Q86WG5 1849 aa16.89■□□□□ 0.29
SHMT2-227ENST00000557269 HTATSF1O43719 755 aaKnown RBP16.89■□□□□ 0.29
SHMT2-227ENST00000557269 SYTL4Q96C24 671 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-227ENST00000557269 CEMIPQ8WUJ3 1361 aa16.89■□□□□ 0.29
SHMT2-227ENST00000557269 ERVV-2B6SEH9 535 aa16.88■□□□□ 0.29
SHMT2-227ENST00000557269 RTF1Q92541 710 aaKnown RBP16.88■□□□□ 0.29
SHMT2-227ENST00000557269 VIRMAQ69YN4 1812 aaKnown RBP16.87■□□□□ 0.29
SHMT2-227ENST00000557269 CABP4P57796 275 aa16.87■□□□□ 0.29
SHMT2-227ENST00000557269 NFATC2IPQ8NCF5 419 aa16.87■□□□□ 0.29
SHMT2-227ENST00000557269 PIGBQ92521 554 aa16.87■□□□□ 0.29
SHMT2-227ENST00000557269 NHSQ6T4R5 1651 aa16.87■□□□□ 0.29
SHMT2-227ENST00000557269 ITGB4P16144 1822 aa16.86■□□□□ 0.29
SHMT2-227ENST00000557269 BCL11BQ9C0K0 894 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-227ENST00000557269 SLC52A2Q9HAB3 445 aa16.86■□□□□ 0.29
SHMT2-227ENST00000557269 MRC1P22897 1456 aa16.86■□□□□ 0.29
SHMT2-227ENST00000557269 EP400Q96L91 3159 aa16.85■□□□□ 0.29
SHMT2-227ENST00000557269 TMOD3Q9NYL9 352 aa16.85■□□□□ 0.29
SHMT2-227ENST00000557269 LMOD3Q0VAK6 560 aa16.84■□□□□ 0.29
SHMT2-227ENST00000557269 WWC1Q8IX03 1113 aa16.84■□□□□ 0.29
SHMT2-227ENST00000557269 CCDC27Q2M243 656 aa16.83■□□□□ 0.28
SHMT2-227ENST00000557269 MIS18AQ9NYP9 233 aa16.83■□□□□ 0.28
SHMT2-227ENST00000557269 KAT6BQ8WYB5 2073 aa16.82■□□□□ 0.28
SHMT2-227ENST00000557269 BTAF1O14981 1849 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms