RNA–Protein interactions for RNA: ENST00000556707.5

SDR39U1-221, Transcript of short chain dehydrogenase/reductase family 39U member 1, human

TSL 2

Gene SDR39U1, Length 1,196 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDR39U1-221	ENST00000556707	PPP2R1A	P30153	589 aa		33.18	■■■□□ 2.9
SDR39U1-221	ENST00000556707	SF3B2	Q13435	895 aa	Known RBP	33.18	■■■□□ 2.9
SDR39U1-221	ENST00000556707	TRIM37	O94972	964 aa		33.17	■■■□□ 2.9
SDR39U1-221	ENST00000556707	PKD1L3	Q7Z443	1732 aa		33.16	■■■□□ 2.9
SDR39U1-221	ENST00000556707	COL3A1	P02461	1466 aa	Predicted RBP	33.16	■■■□□ 2.9
SDR39U1-221	ENST00000556707	DDX54	Q8TDD1	881 aa	Known RBP	33.15	■■■□□ 2.9
SDR39U1-221	ENST00000556707	DIAPH1	O60610	1272 aa	Known RBP	33.14	■■■□□ 2.9
SDR39U1-221	ENST00000556707	PLEKHG2	Q9H7P9	1386 aa		33.1	■■■□□ 2.89
SDR39U1-221	ENST00000556707	CFAP53	Q96M91	514 aa		33.1	■■■□□ 2.89
SDR39U1-221	ENST00000556707	RALBP1	Q15311	655 aa		33.09	■■■□□ 2.89
SDR39U1-221	ENST00000556707	KDR	P35968	1356 aa		33.09	■■■□□ 2.89
SDR39U1-221	ENST00000556707	PCDH11X	Q9BZA7	1347 aa		33.08	■■■□□ 2.89
SDR39U1-221	ENST00000556707	PCDH11Y	Q9BZA8	1340 aa		33.08	■■■□□ 2.89
SDR39U1-221	ENST00000556707	BAG6	P46379	1132 aa		33.08	■■■□□ 2.89
SDR39U1-221	ENST00000556707	SULT6B1	Q6IMI4	303 aa		33.08	■■■□□ 2.89
SDR39U1-221	ENST00000556707	DEFB132	Q7Z7B7	95 aa		33.08	■■■□□ 2.89
SDR39U1-221	ENST00000556707	AEBP1	Q8IUX7	1158 aa		33.08	■■■□□ 2.89
SDR39U1-221	ENST00000556707	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	33.08	■■■□□ 2.89
SDR39U1-221	ENST00000556707	NHS	Q6T4R5	1651 aa		33.07	■■■□□ 2.88
SDR39U1-221	ENST00000556707	SPG7	Q9UQ90	795 aa		33.06	■■■□□ 2.88
SDR39U1-221	ENST00000556707	BCL11B	Q9C0K0	894 aa	Predicted RBP	33.05	■■■□□ 2.88
SDR39U1-221	ENST00000556707	CYP27B1	O15528	508 aa		33.03	■■■□□ 2.88
SDR39U1-221	ENST00000556707	APBA3	O96018	575 aa		33.03	■■■□□ 2.88
SDR39U1-221	ENST00000556707	DOT1L	Q8TEK3	1739 aa		33.02	■■■□□ 2.88
SDR39U1-221	ENST00000556707	PTF1A	Q7RTS3	328 aa		33.02	■■■□□ 2.88
SDR39U1-221	ENST00000556707	ACSBG1	Q96GR2	724 aa		33.02	■■■□□ 2.88
SDR39U1-221	ENST00000556707	KCNQ2	O43526	872 aa		33	■■■□□ 2.87
SDR39U1-221	ENST00000556707	U2SURP	O15042	1029 aa	Known RBP	32.99	■■■□□ 2.87
SDR39U1-221	ENST00000556707	HMOX1	P09601	288 aa		32.99	■■■□□ 2.87
SDR39U1-221	ENST00000556707	EN1	Q05925	392 aa	Predicted RBP	32.99	■■■□□ 2.87
SDR39U1-221	ENST00000556707	BTAF1	O14981	1849 aa		32.98	■■■□□ 2.87
SDR39U1-221	ENST00000556707	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.98	■■■□□ 2.87
SDR39U1-221	ENST00000556707	AMOT	Q4VCS5	1084 aa		32.97	■■■□□ 2.87
SDR39U1-221	ENST00000556707	NUDC	Q9Y266	331 aa		32.97	■■■□□ 2.87
SDR39U1-221	ENST00000556707	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.96	■■■□□ 2.87
SDR39U1-221	ENST00000556707	RGPD4	Q7Z3J3	1758 aa		32.96	■■■□□ 2.87
SDR39U1-221	ENST00000556707	IFNL2	Q8IZJ0	200 aa		32.95	■■■□□ 2.87
SDR39U1-221	ENST00000556707	CAMKK2	Q96RR4	588 aa		32.95	■■■□□ 2.87
SDR39U1-221	ENST00000556707	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.95	■■■□□ 2.87
SDR39U1-221	ENST00000556707	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.95	■■■□□ 2.86
SDR39U1-221	ENST00000556707	NKX1-1	Q15270	411 aa	Predicted RBP	32.94	■■■□□ 2.86
SDR39U1-221	ENST00000556707	PHKG2	P15735	406 aa		32.93	■■■□□ 2.86
SDR39U1-221	ENST00000556707	TOGARAM1	Q9Y4F4	1720 aa		32.93	■■■□□ 2.86
SDR39U1-221	ENST00000556707	ITGB4	P16144	1822 aa		32.93	■■■□□ 2.86
SDR39U1-221	ENST00000556707	PLSCR1	O15162	318 aa		32.92	■■■□□ 2.86
SDR39U1-221	ENST00000556707	PRIM1	P49642	420 aa	Known RBP	32.92	■■■□□ 2.86
SDR39U1-221	ENST00000556707	EZH2	Q15910	746 aa	Known RBP	32.92	■■■□□ 2.86
SDR39U1-221	ENST00000556707	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.91	■■■□□ 2.86
SDR39U1-221	ENST00000556707	RREB1	Q92766	1687 aa		32.91	■■■□□ 2.86
SDR39U1-221	ENST00000556707	SYTL4	Q96C24	671 aa	Predicted RBP	32.89	■■■□□ 2.86
SDR39U1-221	ENST00000556707	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.88	■■■□□ 2.85
SDR39U1-221	ENST00000556707	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.88	■■■□□ 2.85	6e-10	■■■■□ 25.3
SDR39U1-221	ENST00000556707	HSP90AB1	P08238	724 aa	Known RBP	32.85	■■■□□ 2.85
SDR39U1-221	ENST00000556707	C1orf141	Q5JVX7	400 aa		32.84	■■■□□ 2.85
SDR39U1-221	ENST00000556707	RSPH6A	Q9H0K4	717 aa		32.84	■■■□□ 2.85
SDR39U1-221	ENST00000556707	NUP188	Q5SRE5	1749 aa		32.84	■■■□□ 2.85
SDR39U1-221	ENST00000556707	VIRMA	Q69YN4	1812 aa	Known RBP	32.84	■■■□□ 2.85
SDR39U1-221	ENST00000556707	FCHSD2	O94868	740 aa		32.82	■■■□□ 2.84
SDR39U1-221	ENST00000556707	SCN11A	Q9UI33	1791 aa		32.81	■■■□□ 2.84
SDR39U1-221	ENST00000556707	PRKAR2B	P31323	418 aa		32.81	■■■□□ 2.84
SDR39U1-221	ENST00000556707	DCAF5	Q96JK2	942 aa		32.81	■■■□□ 2.84
SDR39U1-221	ENST00000556707	MTHFSD	Q2M296	383 aa	Known RBP	32.8	■■■□□ 2.84
SDR39U1-221	ENST00000556707	AKAP4	Q5JQC9	854 aa		32.79	■■■□□ 2.84
SDR39U1-221	ENST00000556707	KDM6A	O15550	1401 aa	Predicted RBP	32.78	■■■□□ 2.84
SDR39U1-221	ENST00000556707	LY75	O60449	1722 aa		32.78	■■■□□ 2.84
SDR39U1-221	ENST00000556707	MPRIP	Q6WCQ1	1025 aa		32.78	■■■□□ 2.84
SDR39U1-221	ENST00000556707	PROM2	Q8N271	834 aa		32.78	■■■□□ 2.84
SDR39U1-221	ENST00000556707	ERVV-2	B6SEH9	535 aa		32.76	■■■□□ 2.83
SDR39U1-221	ENST00000556707	TXNRD1	Q16881	649 aa		32.76	■■■□□ 2.83
SDR39U1-221	ENST00000556707	PIGB	Q92521	554 aa		32.75	■■■□□ 2.83
SDR39U1-221	ENST00000556707	PHACTR3	Q96KR7	559 aa		32.75	■■■□□ 2.83
SDR39U1-221	ENST00000556707	GAS2L2	Q8NHY3	880 aa		32.74	■■■□□ 2.83
SDR39U1-221	ENST00000556707	TMOD3	Q9NYL9	352 aa		32.74	■■■□□ 2.83
SDR39U1-221	ENST00000556707	ANP32C	O43423	234 aa		32.73	■■■□□ 2.83
SDR39U1-221	ENST00000556707	ADAMTS7	Q9UKP4	1686 aa		32.72	■■■□□ 2.83
SDR39U1-221	ENST00000556707	CABP4	P57796	275 aa		32.68	■■■□□ 2.82
SDR39U1-221	ENST00000556707	MAP3K5	Q99683	1374 aa		32.68	■■■□□ 2.82
SDR39U1-221	ENST00000556707	RNMT	O43148	476 aa	Known RBP	32.67	■■■□□ 2.82
SDR39U1-221	ENST00000556707	SLC27A3	Q5K4L6	730 aa		32.67	■■■□□ 2.82
SDR39U1-221	ENST00000556707	NBPF14	Q5TI25	921 aa		32.67	■■■□□ 2.82
SDR39U1-221	ENST00000556707	SMARCC1	Q92922	1105 aa	Predicted RBP	32.67	■■■□□ 2.82
SDR39U1-221	ENST00000556707	PNN	Q9H307	717 aa	Known RBP	32.67	■■■□□ 2.82
SDR39U1-221	ENST00000556707	LGR6	Q9HBX8	967 aa		32.67	■■■□□ 2.82
SDR39U1-221	ENST00000556707	PLEKHF1	Q96S99	279 aa		32.66	■■■□□ 2.82
SDR39U1-221	ENST00000556707	PALLD	Q8WX93	1383 aa		32.66	■■■□□ 2.82
SDR39U1-221	ENST00000556707	GNAT3	A8MTJ3	354 aa		32.65	■■■□□ 2.82
SDR39U1-221	ENST00000556707	NEFM	P07197	916 aa		32.65	■■■□□ 2.82
SDR39U1-221	ENST00000556707	LRRC4B	Q9NT99	713 aa		32.65	■■■□□ 2.82
SDR39U1-221	ENST00000556707	DLG5	Q8TDM6	1919 aa		32.65	■■■□□ 2.82
SDR39U1-221	ENST00000556707	PAPPA	Q13219	1627 aa		32.63	■■■□□ 2.81
SDR39U1-221	ENST00000556707	MRC1	P22897	1456 aa		32.63	■■■□□ 2.81
SDR39U1-221	ENST00000556707	WDR43	Q15061	677 aa	Known RBP eCLIP	32.63	■■■□□ 2.81
SDR39U1-221	ENST00000556707	NFATC2IP	Q8NCF5	419 aa		32.63	■■■□□ 2.81
SDR39U1-221	ENST00000556707	ASAP1	Q9ULH1	1129 aa		32.63	■■■□□ 2.81
SDR39U1-221	ENST00000556707	SLC52A2	Q9HAB3	445 aa		32.61	■■■□□ 2.81
SDR39U1-221	ENST00000556707	ANO8	Q9HCE9	1232 aa	Predicted RBP	32.61	■■■□□ 2.81
SDR39U1-221	ENST00000556707	ATG3	Q9NT62	314 aa		32.61	■■■□□ 2.81
SDR39U1-221	ENST00000556707	CCNL1	Q9UK58	526 aa	Predicted RBP	32.61	■■■□□ 2.81
SDR39U1-221	ENST00000556707	TAF1L	Q8IZX4	1826 aa		32.61	■■■□□ 2.81
SDR39U1-221	ENST00000556707	R3HDM1	Q15032	1099 aa	Known RBP	32.6	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms