RNA–Protein interactions for RNA: ENST00000556707.5

SDR39U1-221, Transcript of short chain dehydrogenase/reductase family 39U member 1, humanhuman

TSL 2

Gene SDR39U1, Length 1,196 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDR39U1-221ENST00000556707 NISCHQ9Y2I1 1504 aa59.48■■■■■ 7.11
SDR39U1-221ENST00000556707 CCDC180Q9P1Z9 1646 aa52.86■■■■■ 6.05
SDR39U1-221ENST00000556707 ABCC9O60706 1549 aa51.51■■■■■ 5.84
SDR39U1-221ENST00000556707 RB1CC1Q8TDY2 1594 aa49.65■■■■■ 5.54
SDR39U1-221ENST00000556707 NACADO15069 1562 aa49.64■■■■■ 5.54
SDR39U1-221ENST00000556707 DCAF8L2P0C7V8 631 aa49.58■■■■■ 5.53
SDR39U1-221ENST00000556707 ZCCHC6Q5VYS8 1495 aaKnown RBP49.57■■■■■ 5.53
SDR39U1-221ENST00000556707 MYO15BQ96JP2 1530 aa49.39■■■■■ 5.5
SDR39U1-221ENST00000556707 DCAF1Q9Y4B6 1507 aa49.24■■■■■ 5.47
SDR39U1-221ENST00000556707 UNC13AQ9UPW8 1703 aa48.61■■■■■ 5.37
SDR39U1-221ENST00000556707 SCRIBQ14160 1630 aa48.21■■■■■ 5.31
SDR39U1-221ENST00000556707 BICRAQ9NZM4 1560 aa48.15■■■■■ 5.3
SDR39U1-221ENST00000556707 PABPN1Q86U42 306 aaKnown RBP eCLIP48.14■■■■■ 5.32e-8■□□□□ 11.2
SDR39U1-221ENST00000556707 SHROOM4Q9ULL8 1493 aa47.65■■■■■ 5.22
SDR39U1-221ENST00000556707 DNAJC5BQ9UF47 199 aa47.13■■■■■ 5.14
SDR39U1-221ENST00000556707 EIF4G1Q04637 1599 aaKnown RBP46.85■■■■■ 5.09
SDR39U1-221ENST00000556707 CC2D2AQ9P2K1 1620 aa46.64■■■■■ 5.06
SDR39U1-221ENST00000556707 CECR2Q9BXF3 1484 aa46.31■■■■■ 5
SDR39U1-221ENST00000556707 SMARCA4P51532 1647 aa46.14■■■■■ 4.98
SDR39U1-221ENST00000556707 BAZ1AQ9NRL2 1556 aaPredicted RBP46.09■■■■■ 4.97
SDR39U1-221ENST00000556707 MROH2BQ7Z745 1585 aa45.84■■■■■ 4.93
SDR39U1-221ENST00000556707 ATAD2BQ9ULI0 1458 aa45.82■■■■■ 4.93
SDR39U1-221ENST00000556707 SMARCA2P51531 1590 aa45.79■■■■■ 4.92
SDR39U1-221ENST00000556707 NCAPD3P42695 1498 aa45.78■■■■■ 4.92
SDR39U1-221ENST00000556707 PEG3Q9GZU2 1588 aa45.69■■■■■ 4.9
SDR39U1-221ENST00000556707 HMGXB3Q12766 1538 aa45.59■■■■■ 4.89
SDR39U1-221ENST00000556707 BAZ1BQ9UIG0 1483 aaKnown RBP45.46■■■■■ 4.87
SDR39U1-221ENST00000556707 WIZO95785 1651 aa45.38■■■■■ 4.86
SDR39U1-221ENST00000556707 RSF1Q96T23 1441 aaPredicted RBP45.36■■■■■ 4.85
SDR39U1-221ENST00000556707 TOP2AP11388 1531 aaKnown RBP44.89■■■■■ 4.78
SDR39U1-221ENST00000556707 NESP48681 1621 aa44.63■■■■■ 4.73
SDR39U1-221ENST00000556707 LAMC3Q9Y6N6 1575 aa44.56■■■■■ 4.72
SDR39U1-221ENST00000556707 CADPSQ9ULU8 1353 aa44.44■■■■■ 4.71
SDR39U1-221ENST00000556707 ERCC6Q03468 1493 aa44.39■■■■■ 4.7
SDR39U1-221ENST00000556707 CCDC88BA6NC98 1476 aa44.35■■■■■ 4.69
SDR39U1-221ENST00000556707 SUPT5HO00267 1087 aaKnown RBP44.3■■■■■ 4.68
SDR39U1-221ENST00000556707 PDS5BQ9NTI5 1447 aa44.24■■■■■ 4.67
SDR39U1-221ENST00000556707 CFTRP13569 1480 aa44.22■■■■■ 4.67
SDR39U1-221ENST00000556707 KIF21AQ7Z4S6 1674 aa44.16■■■■■ 4.66
SDR39U1-221ENST00000556707 PRDM2Q13029 1718 aa44.01■■■■■ 4.64
SDR39U1-221ENST00000556707 THOC2Q8NI27 1593 aaKnown RBP43.95■■■■■ 4.63
SDR39U1-221ENST00000556707 FANCD2Q9BXW9 1451 aa43.94■■■■■ 4.62
SDR39U1-221ENST00000556707 CUX2O14529 1486 aa43.88■■■■■ 4.61
SDR39U1-221ENST00000556707 CEP164Q9UPV0 1460 aa43.87■■■■■ 4.61
SDR39U1-221ENST00000556707 MRC2Q9UBG0 1479 aa43.77■■■■■ 4.6
SDR39U1-221ENST00000556707 WDR62O43379 1518 aa43.64■■■■■ 4.58
SDR39U1-221ENST00000556707 URB2Q14146 1524 aaKnown RBP43.5■■■■■ 4.55
SDR39U1-221ENST00000556707 ABCC8Q09428 1581 aa43.28■■■■■ 4.52
SDR39U1-221ENST00000556707 TOPBP1Q92547 1522 aa43.27■■■■■ 4.52
SDR39U1-221ENST00000556707 DNMBPQ6XZF7 1577 aa43.24■■■■■ 4.51
SDR39U1-221ENST00000556707 CUX1P39880 1505 aa43■■■■■ 4.47
SDR39U1-221ENST00000556707 IFT140Q96RY7 1462 aa42.94■■■■■ 4.47
SDR39U1-221ENST00000556707 POLA1P09884 1462 aaPredicted RBP42.9■■■■■ 4.46
SDR39U1-221ENST00000556707 FGD5Q6ZNL6 1462 aa42.82■■■■■ 4.45
SDR39U1-221ENST00000556707 TARBP1Q13395 1621 aaKnown RBP42.8■■■■■ 4.44
SDR39U1-221ENST00000556707 WRNQ14191 1432 aaPredicted RBP eCLIP42.76■■■■■ 4.44
SDR39U1-221ENST00000556707 ZNF608Q9ULD9 1512 aaPredicted RBP42.73■■■■■ 4.43
SDR39U1-221ENST00000556707 SOGA1O94964 1423 aa42.72■■■■■ 4.43
SDR39U1-221ENST00000556707 RAD54L2Q9Y4B4 1467 aa42.71■■■■■ 4.43
SDR39U1-221ENST00000556707 BIVM-ERCC5R4GMW8 1640 aa42.7■■■■■ 4.43
SDR39U1-221ENST00000556707 TOP2BQ02880 1626 aa42.68■■■■■ 4.42
SDR39U1-221ENST00000556707 SYNJ1O43426 1573 aa42.67■■■■■ 4.42
SDR39U1-221ENST00000556707 EIF4G3O43432 1585 aaKnown RBP42.6■■■■■ 4.41
SDR39U1-221ENST00000556707 AQRO60306 1485 aaKnown RBP eCLIP42.51■■■■■ 4.4
SDR39U1-221ENST00000556707 WDR97A6NE52 1622 aa42.51■■■■■ 4.4
SDR39U1-221ENST00000556707 TDRD9Q8NDG6 1382 aaKnown RBP42.45■■■■■ 4.39
SDR39U1-221ENST00000556707 ABCA10Q8WWZ4 1543 aa42.42■■■■■ 4.38
SDR39U1-221ENST00000556707 DNAJC5Q9H3Z4 198 aa42.34■■■■■ 4.37
SDR39U1-221ENST00000556707 ABCA5Q8WWZ7 1642 aa42.26■■■■■ 4.36
SDR39U1-221ENST00000556707 GAPVD1Q14C86 1478 aa42.24■■■■■ 4.35
SDR39U1-221ENST00000556707 GRIN2BQ13224 1484 aa42.21■■■■■ 4.35
SDR39U1-221ENST00000556707 PBRM1Q86U86 1689 aa42.2■■■■■ 4.35
SDR39U1-221ENST00000556707 SNAPC4Q5SXM2 1469 aa42.12■■■■■ 4.33
SDR39U1-221ENST00000556707 MAGI1Q96QZ7 1491 aaPredicted RBP42.1■■■■■ 4.33
SDR39U1-221ENST00000556707 OSCARQ8IYS5 282 aa42.08■■■■■ 4.33
SDR39U1-221ENST00000556707 CHD1O14646 1710 aa42.08■■■■■ 4.33
SDR39U1-221ENST00000556707 FBLN2P98095 1184 aa41.95■■■■■ 4.31
SDR39U1-221ENST00000556707 ERICH3Q5RHP9 1530 aa41.93■■■■■ 4.3
SDR39U1-221ENST00000556707 SYNJ2O15056 1496 aa41.92■■■■■ 4.3
SDR39U1-221ENST00000556707 CHMP7Q8WUX9 453 aaPredicted RBP41.87■■■■■ 4.29
SDR39U1-221ENST00000556707 KIF27Q86VH2 1401 aa41.86■■■■■ 4.29
SDR39U1-221ENST00000556707 TRIM41Q8WV44 630 aa41.84■■■■■ 4.29
SDR39U1-221ENST00000556707 ADAMTS12P58397 1594 aa41.84■■■■■ 4.29
SDR39U1-221ENST00000556707 FHAD1B1AJZ9 1412 aa41.76■■■■■ 4.28
SDR39U1-221ENST00000556707 GRIN2AQ12879 1464 aa41.67■■■■■ 4.26
SDR39U1-221ENST00000556707 IGF1RP08069 1367 aa41.67■■■■■ 4.26
SDR39U1-221ENST00000556707 CUL7Q14999 1698 aa41.6■■■■■ 4.25
SDR39U1-221ENST00000556707 CLASP1Q7Z460 1538 aa41.58■■■■■ 4.25
SDR39U1-221ENST00000556707 RUSC2Q8N2Y8 1516 aa41.53■■■■■ 4.24
SDR39U1-221ENST00000556707 NUP160Q12769 1436 aa41.48■■■■■ 4.23
SDR39U1-221ENST00000556707 CEP170Q5SW79 1584 aa41.46■■■■■ 4.23
SDR39U1-221ENST00000556707 CHIC1Q5VXU3 224 aa41.45■■■■■ 4.23
SDR39U1-221ENST00000556707 CARMIL1Q5VZK9 1371 aa41.44■■■■■ 4.22
SDR39U1-221ENST00000556707 RIMBP3CA6NJZ7 1639 aa41.42■■■■■ 4.22
SDR39U1-221ENST00000556707 RIMBP3BA6NNM3 1639 aa41.42■■■■■ 4.22
SDR39U1-221ENST00000556707 RIMBP3Q9UFD9 1639 aa41.42■■■■■ 4.22
SDR39U1-221ENST00000556707 ARHGEF11O15085 1522 aa41.41■■■■■ 4.22
SDR39U1-221ENST00000556707 RAPGEF2Q9Y4G8 1499 aa41.21■■■■■ 4.19
SDR39U1-221ENST00000556707 SHROOM2Q13796 1616 aa41.18■■■■■ 4.18
SDR39U1-221ENST00000556707 EEA1Q15075 1411 aa41.17■■■■■ 4.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms