RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 MEGF6O75095 1541 aa14.56□□□□□ -0.08
SHMT2-218ENST00000555213 RGPD1P0DJD0 1748 aa14.56□□□□□ -0.08
SHMT2-218ENST00000555213 RGPD2P0DJD1 1756 aa14.56□□□□□ -0.08
SHMT2-218ENST00000555213 EXOC5O00471 708 aa14.56□□□□□ -0.08
SHMT2-218ENST00000555213 MRS2Q9HD23 443 aa14.56□□□□□ -0.08
SHMT2-218ENST00000555213 SULT6B1Q6IMI4 303 aa14.55□□□□□ -0.08
SHMT2-218ENST00000555213 KDRP35968 1356 aa14.55□□□□□ -0.08
SHMT2-218ENST00000555213 PCDH11XQ9BZA7 1347 aa14.53□□□□□ -0.08
SHMT2-218ENST00000555213 PCDH11YQ9BZA8 1340 aa14.53□□□□□ -0.08
SHMT2-218ENST00000555213 U2AF1L5P0DN76 240 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-218ENST00000555213 U2AF1Q01081 240 aaKnown RBP eCLIP14.53□□□□□ -0.08
SHMT2-218ENST00000555213 YTHDC1Q96MU7 727 aaKnown RBP14.53□□□□□ -0.08
SHMT2-218ENST00000555213 SPG7Q9UQ90 795 aa14.53□□□□□ -0.08
SHMT2-218ENST00000555213 HMOX1P09601 288 aa14.52□□□□□ -0.09
SHMT2-218ENST00000555213 AEBP1Q8IUX7 1158 aa14.52□□□□□ -0.09
SHMT2-218ENST00000555213 ZCRB1Q8TBF4 217 aaKnown RBP14.52□□□□□ -0.09
SHMT2-218ENST00000555213 BRWD3Q6RI45 1802 aa14.51□□□□□ -0.09
SHMT2-218ENST00000555213 WDR43Q15061 677 aaKnown RBP eCLIP14.51□□□□□ -0.09
SHMT2-218ENST00000555213 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.51□□□□□ -0.09
SHMT2-218ENST00000555213 PKD1L3Q7Z443 1732 aa14.5□□□□□ -0.09
SHMT2-218ENST00000555213 NEFMP07197 916 aa14.5□□□□□ -0.09
SHMT2-218ENST00000555213 AMOTQ4VCS5 1084 aa14.5□□□□□ -0.09
SHMT2-218ENST00000555213 PLEKHO1Q53GL0 409 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-218ENST00000555213 FAM196AQ6ZSG2 479 aa14.5□□□□□ -0.09
SHMT2-218ENST00000555213 FAM9BQ8IZU0 186 aa14.49□□□□□ -0.09
SHMT2-218ENST00000555213 DDX54Q8TDD1 881 aaKnown RBP14.49□□□□□ -0.09
SHMT2-218ENST00000555213 PNNQ9H307 717 aaKnown RBP14.49□□□□□ -0.09
SHMT2-218ENST00000555213 FCHSD2O94868 740 aa14.48□□□□□ -0.09
SHMT2-218ENST00000555213 MARCH10Q8NA82 808 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-218ENST00000555213 BCL9O00512 1426 aa14.48□□□□□ -0.09
SHMT2-218ENST00000555213 PRKAR2BP31323 418 aa14.47□□□□□ -0.09
SHMT2-218ENST00000555213 C1orf141Q5JVX7 400 aa14.47□□□□□ -0.09
SHMT2-218ENST00000555213 MAPK8IP3Q9UPT6 1336 aa14.46□□□□□ -0.09
SHMT2-218ENST00000555213 HSP90AB1P08238 724 aaKnown RBP14.46□□□□□ -0.09
SHMT2-218ENST00000555213 FAM182BQ5T319 152 aa14.46□□□□□ -0.09
SHMT2-218ENST00000555213 ZNF530Q6P9A1 599 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-218ENST00000555213 RSPH6AQ9H0K4 717 aa14.46□□□□□ -0.09
SHMT2-218ENST00000555213 SF3B2Q13435 895 aaKnown RBP14.45□□□□□ -0.1
SHMT2-218ENST00000555213 IFNL2Q8IZJ0 200 aa14.45□□□□□ -0.1
SHMT2-218ENST00000555213 GAS2L2Q8NHY3 880 aa14.45□□□□□ -0.1
SHMT2-218ENST00000555213 SHANK3Q9BYB0 1731 aa14.45□□□□□ -0.1
SHMT2-218ENST00000555213 SRCAPQ6ZRS2 3230 aa14.43□□□□□ -0.1
SHMT2-218ENST00000555213 CYP27B1O15528 508 aa14.43□□□□□ -0.1
SHMT2-218ENST00000555213 PHKG2P15735 406 aa14.43□□□□□ -0.1
SHMT2-218ENST00000555213 CCDC125Q86Z20 511 aa14.43□□□□□ -0.1
SHMT2-218ENST00000555213 ADAMTS8Q9UP79 889 aa14.43□□□□□ -0.1
SHMT2-218ENST00000555213 AKAP4Q5JQC9 854 aa14.41□□□□□ -0.1
SHMT2-218ENST00000555213 DCAF5Q96JK2 942 aa14.41□□□□□ -0.1
SHMT2-218ENST00000555213 MAP3K5Q99683 1374 aa14.41□□□□□ -0.1
SHMT2-218ENST00000555213 NHSQ6T4R5 1651 aa14.4□□□□□ -0.1
SHMT2-218ENST00000555213 TRIM37O94972 964 aa14.4□□□□□ -0.1
SHMT2-218ENST00000555213 NKX1-1Q15270 411 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-218ENST00000555213 MTHFSDQ2M296 383 aaKnown RBP14.4□□□□□ -0.1
SHMT2-218ENST00000555213 SYTL4Q96C24 671 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-218ENST00000555213 BCL11BQ9C0K0 894 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-218ENST00000555213 DOT1LQ8TEK3 1739 aa14.4□□□□□ -0.1
SHMT2-218ENST00000555213 ACSBG1Q96GR2 724 aa14.39□□□□□ -0.11
SHMT2-218ENST00000555213 PHACTR3Q96KR7 559 aa14.39□□□□□ -0.11
SHMT2-218ENST00000555213 GNAT3A8MTJ3 354 aa14.38□□□□□ -0.11
SHMT2-218ENST00000555213 HNRNPUQ00839 825 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHMT2-218ENST00000555213 RTF1Q92541 710 aaKnown RBP14.38□□□□□ -0.11
SHMT2-218ENST00000555213 RUNDC1Q96C34 613 aa14.38□□□□□ -0.11
SHMT2-218ENST00000555213 PLEKHF1Q96S99 279 aa14.38□□□□□ -0.11
SHMT2-218ENST00000555213 BAG6P46379 1132 aa14.37□□□□□ -0.11
SHMT2-218ENST00000555213 TMOD3Q9NYL9 352 aa14.37□□□□□ -0.11
SHMT2-218ENST00000555213 KDM6AO15550 1401 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-218ENST00000555213 TNS1Q9HBL0 1735 aaKnown RBP14.37□□□□□ -0.11
SHMT2-218ENST00000555213 ERVV-2B6SEH9 535 aa14.36□□□□□ -0.11
SHMT2-218ENST00000555213 APBA3O96018 575 aa14.36□□□□□ -0.11
SHMT2-218ENST00000555213 PRIM1P49642 420 aaKnown RBP14.36□□□□□ -0.11
SHMT2-218ENST00000555213 LMOD3Q0VAK6 560 aa14.36□□□□□ -0.11
SHMT2-218ENST00000555213 NFE2L2Q16236 605 aa14.36□□□□□ -0.11
SHMT2-218ENST00000555213 MPRIPQ6WCQ1 1025 aa14.36□□□□□ -0.11
SHMT2-218ENST00000555213 CCDC146Q8IYE0 955 aa14.36□□□□□ -0.11
SHMT2-218ENST00000555213 TOGARAM1Q9Y4F4 1720 aa14.35□□□□□ -0.11
SHMT2-218ENST00000555213 KCNQ2O43526 872 aa14.35□□□□□ -0.11
SHMT2-218ENST00000555213 CABP4P57796 275 aa14.35□□□□□ -0.11
SHMT2-218ENST00000555213 SBF2Q86WG5 1849 aa14.35□□□□□ -0.11
SHMT2-218ENST00000555213 MRC1P22897 1456 aa14.34□□□□□ -0.11
SHMT2-218ENST00000555213 SENP3-EIF4A1A0A087X0R7 540 aa14.34□□□□□ -0.11
SHMT2-218ENST00000555213 HTATSF1O43719 755 aaKnown RBP14.34□□□□□ -0.11
SHMT2-218ENST00000555213 RNMTO43148 476 aaKnown RBP14.33□□□□□ -0.12
SHMT2-218ENST00000555213 TEFQ10587 303 aa14.33□□□□□ -0.12
SHMT2-218ENST00000555213 RGPD3A6NKT7 1758 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-218ENST00000555213 RGPD4Q7Z3J3 1758 aa14.32□□□□□ -0.12
SHMT2-218ENST00000555213 BTAF1O14981 1849 aa14.32□□□□□ -0.12
SHMT2-218ENST00000555213 CENPBP07199 599 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-218ENST00000555213 SMARCC1Q92922 1105 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-218ENST00000555213 SLC52A2Q9HAB3 445 aa14.32□□□□□ -0.12
SHMT2-218ENST00000555213 ADAMTS7Q9UKP4 1686 aa14.32□□□□□ -0.12
SHMT2-218ENST00000555213 SCN11AQ9UI33 1791 aa14.32□□□□□ -0.12
SHMT2-218ENST00000555213 TMPOP42166 694 aaKnown RBP14.31□□□□□ -0.12
SHMT2-218ENST00000555213 RIPK4P57078 832 aa14.31□□□□□ -0.12
SHMT2-218ENST00000555213 PTF1AQ7RTS3 328 aa14.31□□□□□ -0.12
SHMT2-218ENST00000555213 ZBED9Q6R2W3 1325 aa14.31□□□□□ -0.12
SHMT2-218ENST00000555213 CEMIPQ8WUJ3 1361 aa14.31□□□□□ -0.12
SHMT2-218ENST00000555213 PLSCR1O15162 318 aa14.3□□□□□ -0.12
SHMT2-218ENST00000555213 DEFB132Q7Z7B7 95 aa14.3□□□□□ -0.12
SHMT2-218ENST00000555213 PIGBQ92521 554 aa14.3□□□□□ -0.12
SHMT2-218ENST00000555213 LGR6Q9HBX8 967 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms