RNA–Protein interactions for RNA: ENST00000554879.5

PCNX1-209, Transcript of pecanex 1, humanhuman

TSL 1 (best)

Gene PCNX1, Length 4,431 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-209ENST00000554879 DDX54Q8TDD1 881 aaKnown RBP20.62■□□□□ 0.89
PCNX1-209ENST00000554879 TMEM94Q12767 1356 aa20.62■□□□□ 0.89
PCNX1-209ENST00000554879 NPHP3Q7Z494 1330 aa20.61■□□□□ 0.89
PCNX1-209ENST00000554879 SYTL4Q96C24 671 aaPredicted RBP20.61■□□□□ 0.89
PCNX1-209ENST00000554879 ARHGEF28Q8N1W1 1705 aaKnown RBP20.61■□□□□ 0.89
PCNX1-209ENST00000554879 CCDC30Q5VVM6 783 aa20.61■□□□□ 0.89
PCNX1-209ENST00000554879 SLKQ9H2G2 1235 aaPredicted RBP20.6■□□□□ 0.89
PCNX1-209ENST00000554879 PDZRN3Q9UPQ7 1066 aa20.6■□□□□ 0.89
PCNX1-209ENST00000554879 FAM161AQ3B820 660 aa20.6■□□□□ 0.89
PCNX1-209ENST00000554879 SBNO1A3KN83 1393 aa20.6■□□□□ 0.89
PCNX1-209ENST00000554879 BTBD11A6QL63 1104 aa20.6■□□□□ 0.89
PCNX1-209ENST00000554879 RIMS1Q86UR5 1692 aaKnown RBP20.59■□□□□ 0.89
PCNX1-209ENST00000554879 IGHDP01880 384 aa20.59■□□□□ 0.89
PCNX1-209ENST00000554879 IP6K1Q92551 441 aa20.59■□□□□ 0.89
PCNX1-209ENST00000554879 NUTM2BA6NNL0 878 aaPredicted RBP20.58■□□□□ 0.89
PCNX1-209ENST00000554879 NUTM2EB1AL46 878 aaPredicted RBP20.58■□□□□ 0.89
PCNX1-209ENST00000554879 F6X3S4 739 aa20.58■□□□□ 0.89
PCNX1-209ENST00000554879 MFAP1P55081 439 aaKnown RBP20.58■□□□□ 0.89
PCNX1-209ENST00000554879 TAF7Q15545 349 aaPredicted RBP20.58■□□□□ 0.89
PCNX1-209ENST00000554879 NUTM2AQ8IVF1 878 aaPredicted RBP20.58■□□□□ 0.89
PCNX1-209ENST00000554879 ANP32BQ92688 251 aaKnown RBP20.58■□□□□ 0.89
PCNX1-209ENST00000554879 CHMP4AQ9BY43 222 aa20.58■□□□□ 0.89
PCNX1-209ENST00000554879 ALDH1L2Q3SY69 923 aa20.58■□□□□ 0.88
PCNX1-209ENST00000554879 HMMRO75330 724 aa20.58■□□□□ 0.88
PCNX1-209ENST00000554879 L1TD1Q5T7N2 865 aaKnown RBP20.58■□□□□ 0.88
PCNX1-209ENST00000554879 DLC1Q96QB1 1528 aa20.57■□□□□ 0.88
PCNX1-209ENST00000554879 VAMP4O75379 141 aa20.57■□□□□ 0.88
PCNX1-209ENST00000554879 PIK3R4Q99570 1358 aa20.57■□□□□ 0.88
PCNX1-209ENST00000554879 SPRYD3Q8NCJ5 442 aa20.57■□□□□ 0.88
PCNX1-209ENST00000554879 TRMT2AQ8IZ69 625 aaKnown RBP20.56■□□□□ 0.88
PCNX1-209ENST00000554879 AATKQ6ZMQ8 1374 aa20.56■□□□□ 0.88
PCNX1-209ENST00000554879 NBPF6Q5VWK0 638 aa20.56■□□□□ 0.88
PCNX1-209ENST00000554879 NBPF4Q96M43 638 aa20.56■□□□□ 0.88
PCNX1-209ENST00000554879 FER1L4A9Z1Z3 1794 aa20.56■□□□□ 0.88
PCNX1-209ENST00000554879 IFT172Q9UG01 1749 aa20.56■□□□□ 0.88
PCNX1-209ENST00000554879 CPSF1Q10570 1443 aaKnown RBP20.56■□□□□ 0.88
PCNX1-209ENST00000554879 FRAT2O75474 233 aaPredicted RBP20.56■□□□□ 0.88
PCNX1-209ENST00000554879 PCDHB15Q9Y5E8 787 aa20.56■□□□□ 0.88
PCNX1-209ENST00000554879 SPG7Q9UQ90 795 aa20.54■□□□□ 0.88
PCNX1-209ENST00000554879 CDK11BP21127 795 aaKnown RBP20.53■□□□□ 0.88
PCNX1-209ENST00000554879 CPS1P31327 1500 aa20.53■□□□□ 0.88
PCNX1-209ENST00000554879 ANXA1P04083 346 aa20.53■□□□□ 0.88
PCNX1-209ENST00000554879 AAMPQ13685 434 aa20.53■□□□□ 0.88
PCNX1-209ENST00000554879 C9orf78Q9NZ63 289 aaPredicted RBP20.53■□□□□ 0.88
PCNX1-209ENST00000554879 RRP9O43818 475 aaKnown RBP20.52■□□□□ 0.88
PCNX1-209ENST00000554879 CHMP3Q9Y3E7 222 aa20.52■□□□□ 0.87
PCNX1-209ENST00000554879 BECN1Q14457 450 aa20.51■□□□□ 0.87
PCNX1-209ENST00000554879 AMOTQ4VCS5 1084 aa20.51■□□□□ 0.87
PCNX1-209ENST00000554879 ADAMTS2O95450 1211 aa20.51■□□□□ 0.87
PCNX1-209ENST00000554879 ZNF335Q9H4Z2 1342 aaPredicted RBP20.51■□□□□ 0.87
PCNX1-209ENST00000554879 TECPR2O15040 1411 aa20.51■□□□□ 0.87
PCNX1-209ENST00000554879 CEP170BQ9Y4F5 1589 aaPredicted RBP20.51■□□□□ 0.87
PCNX1-209ENST00000554879 MYL6BP14649 208 aa20.5■□□□□ 0.87
PCNX1-209ENST00000554879 CD163L1Q9NR16 1453 aa20.5■□□□□ 0.87
PCNX1-209ENST00000554879 CABP4P57796 275 aa20.5■□□□□ 0.87
PCNX1-209ENST00000554879 MYOM1P52179 1685 aa20.5■□□□□ 0.87
PCNX1-209ENST00000554879 SLAIN2Q9P270 581 aa20.5■□□□□ 0.87
PCNX1-209ENST00000554879 SETD1BQ9UPS6 1966 aaKnown RBP20.5■□□□□ 0.87
PCNX1-209ENST00000554879 CASC1Q6TDU7 716 aa20.5■□□□□ 0.87
PCNX1-209ENST00000554879 MRPL50Q8N5N7 158 aaKnown RBP20.49■□□□□ 0.87
PCNX1-209ENST00000554879 MYO3AQ8NEV4 1616 aa20.49■□□□□ 0.87
PCNX1-209ENST00000554879 FAM13BQ9NYF5 915 aa20.48■□□□□ 0.87
PCNX1-209ENST00000554879 RIC3Q7Z5B4 369 aa20.48■□□□□ 0.87
PCNX1-209ENST00000554879 LGR6Q9HBX8 967 aa20.48■□□□□ 0.87
PCNX1-209ENST00000554879 UBTFL1P0CB47 393 aaPredicted RBP20.47■□□□□ 0.87
PCNX1-209ENST00000554879 BACH2Q9BYV9 841 aa20.47■□□□□ 0.87
PCNX1-209ENST00000554879 AEBP2Q6ZN18 517 aaPredicted RBP20.47■□□□□ 0.87
PCNX1-209ENST00000554879 PTCH1Q13635 1447 aa20.46■□□□□ 0.87
PCNX1-209ENST00000554879 SLC39A6Q13433 755 aa20.46■□□□□ 0.87
PCNX1-209ENST00000554879 TRIM6-TRIM34B2RNG4 842 aa20.46■□□□□ 0.87
PCNX1-209ENST00000554879 PNPLA6Q8IY17 1366 aa20.46■□□□□ 0.87
PCNX1-209ENST00000554879 PTCD1O75127 700 aaKnown RBP20.45■□□□□ 0.87
PCNX1-209ENST00000554879 NEXNQ0ZGT2 675 aa20.45■□□□□ 0.86
PCNX1-209ENST00000554879 GOLGA6L3A6NEY3 463 aa20.45■□□□□ 0.86
PCNX1-209ENST00000554879 KAT6BQ8WYB5 2073 aa20.45■□□□□ 0.86
PCNX1-209ENST00000554879 CDK12Q9NYV4 1490 aaPredicted RBP20.45■□□□□ 0.86
PCNX1-209ENST00000554879 CHL1O00533 1208 aa20.44■□□□□ 0.86
PCNX1-209ENST00000554879 DDX58O95786 925 aaKnown RBP20.44■□□□□ 0.86
PCNX1-209ENST00000554879 FLIIQ13045 1269 aa20.44■□□□□ 0.86
PCNX1-209ENST00000554879 ADGRL3Q9HAR2 1447 aa20.44■□□□□ 0.86
PCNX1-209ENST00000554879 C3P01024 1663 aa20.43■□□□□ 0.86
PCNX1-209ENST00000554879 MAP3K5Q99683 1374 aa20.43■□□□□ 0.86
PCNX1-209ENST00000554879 ANKARQ7Z5J8 1434 aa20.43■□□□□ 0.86
PCNX1-209ENST00000554879 UBR1Q8IWV7 1749 aa20.43■□□□□ 0.86
PCNX1-209ENST00000554879 CCT4P50991 539 aaKnown RBP20.42■□□□□ 0.86
PCNX1-209ENST00000554879 CDC42BPGQ6DT37 1551 aa20.42■□□□□ 0.86
PCNX1-209ENST00000554879 RBM42Q9BTD8 480 aaKnown RBP20.42■□□□□ 0.86
PCNX1-209ENST00000554879 MED14O60244 1454 aa20.42■□□□□ 0.86
PCNX1-209ENST00000554879 PHF23Q9BUL5 403 aaPredicted RBP20.42■□□□□ 0.86
PCNX1-209ENST00000554879 GNAI3P08754 354 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 AKAP4Q5JQC9 854 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 ARHGEF25Q86VW2 580 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 IL17REQ8NFR9 667 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 GNAI2P04899 355 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 G2E3Q7L622 706 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 ARHGEF10O15013 1369 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 SRCIN1Q9C0H9 1055 aa20.41■□□□□ 0.86
PCNX1-209ENST00000554879 IGSF1Q8N6C5 1336 aa20.4■□□□□ 0.86
PCNX1-209ENST00000554879 IFNL2Q8IZJ0 200 aa20.4■□□□□ 0.86
PCNX1-209ENST00000554879 RILPL2Q969X0 211 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms