RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 LRRC59Q96AG4 307 aaKnown RBP18.13■□□□□ 0.49
CUX1-214ENST00000550008 IL16Q14005 1332 aa18.13■□□□□ 0.49
CUX1-214ENST00000550008 MCM4P33991 863 aa18.13■□□□□ 0.49
CUX1-214ENST00000550008 FBXW7Q969H0 707 aa18.13■□□□□ 0.49
CUX1-214ENST00000550008 SPG7Q9UQ90 795 aa18.13■□□□□ 0.49
CUX1-214ENST00000550008 TBC1D9Q6ZT07 1266 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 LARP6Q9BRS8 491 aaKnown RBP18.12■□□□□ 0.49
CUX1-214ENST00000550008 RSPH6AQ9H0K4 717 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 CSPP1Q1MSJ5 1256 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 TRIM35Q9UPQ4 493 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 ARHGEF5Q12774 1597 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 PI4KAP2A4QPH2 592 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 MX1P20591 662 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 PI4KAP1Q8N8J0 262 aa18.12■□□□□ 0.49
CUX1-214ENST00000550008 ADGBQ8N7X0 1667 aa18.11■□□□□ 0.49
CUX1-214ENST00000550008 GOLGA6L6A8MZA4 724 aa18.11■□□□□ 0.49
CUX1-214ENST00000550008 STK3Q13188 491 aa18.11■□□□□ 0.49
CUX1-214ENST00000550008 MRPL50Q8N5N7 158 aaKnown RBP18.11■□□□□ 0.49
CUX1-214ENST00000550008 NUTM2BA6NNL0 878 aaPredicted RBP18.11■□□□□ 0.49
CUX1-214ENST00000550008 NUTM2EB1AL46 878 aaPredicted RBP18.11■□□□□ 0.49
CUX1-214ENST00000550008 FIBPO43427 364 aa18.11■□□□□ 0.49
CUX1-214ENST00000550008 NUTM2AQ8IVF1 878 aaPredicted RBP18.11■□□□□ 0.49
CUX1-214ENST00000550008 BICD2Q8TD16 824 aa18.11■□□□□ 0.49
CUX1-214ENST00000550008 RNF123Q5XPI4 1314 aa18.1■□□□□ 0.49
CUX1-214ENST00000550008 PHF14O94880 888 aa18.1■□□□□ 0.49
CUX1-214ENST00000550008 KRT28Q7Z3Y7 464 aa18.1■□□□□ 0.49
CUX1-214ENST00000550008 MAP3K19Q56UN5 1328 aa18.1■□□□□ 0.49
CUX1-214ENST00000550008 CPLX1O14810 134 aa18.1■□□□□ 0.49
CUX1-214ENST00000550008 MPNDQ8N594 471 aa18.1■□□□□ 0.49
CUX1-214ENST00000550008 EYA1Q99502 592 aa18.09■□□□□ 0.49
CUX1-214ENST00000550008 KIF3AQ9Y496 699 aa18.09■□□□□ 0.49
CUX1-214ENST00000550008 PIP4K2AP48426 406 aaPredicted RBP18.09■□□□□ 0.49
CUX1-214ENST00000550008 CHAF1AQ13111 956 aaPredicted RBP18.09■□□□□ 0.49
CUX1-214ENST00000550008 ABCC1P33527 1531 aa18.09■□□□□ 0.49
CUX1-214ENST00000550008 CABLES1Q8TDN4 633 aa18.09■□□□□ 0.49
CUX1-214ENST00000550008 NRDCO43847 1150 aa18.09■□□□□ 0.49
CUX1-214ENST00000550008 DNAAF4Q8WXU2 420 aa18.09■□□□□ 0.49
CUX1-214ENST00000550008 CREBRFQ8IUR6 639 aa18.08■□□□□ 0.49
CUX1-214ENST00000550008 TBC1D32Q96NH3 1257 aa18.08■□□□□ 0.49
CUX1-214ENST00000550008 CCDC8Q9H0W5 538 aaPredicted RBP18.08■□□□□ 0.48
CUX1-214ENST00000550008 SLC39A6Q13433 755 aa18.08■□□□□ 0.48
CUX1-214ENST00000550008 PUS7Q96PZ0 661 aaKnown RBP18.08■□□□□ 0.48
CUX1-214ENST00000550008 BOLA2Q9H3K6 86 aa18.07■□□□□ 0.48
CUX1-214ENST00000550008 KDM5CP41229 1560 aa18.07■□□□□ 0.48
CUX1-214ENST00000550008 HDAC1Q13547 482 aaPredicted RBP18.07■□□□□ 0.48
CUX1-214ENST00000550008 MYD88Q99836 296 aa18.07■□□□□ 0.48
CUX1-214ENST00000550008 VPS37DQ86XT2 251 aa18.07■□□□□ 0.48
CUX1-214ENST00000550008 NPC1L1Q9UHC9 1359 aa18.07■□□□□ 0.48
CUX1-214ENST00000550008 NUCB1Q02818 461 aa18.06■□□□□ 0.48
CUX1-214ENST00000550008 ANKRD24Q8TF21 1146 aa18.06■□□□□ 0.48
CUX1-214ENST00000550008 KAT6BQ8WYB5 2073 aa18.06■□□□□ 0.48
CUX1-214ENST00000550008 STK11IPQ8N1F8 1099 aa18.06■□□□□ 0.48
CUX1-214ENST00000550008 ZBTB40Q9NUA8 1239 aa18.06■□□□□ 0.48
CUX1-214ENST00000550008 BMP2KLQ5H9B9 411 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 ATP5J2-PTCD1G3V325 749 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 CEBPZQ03701 1054 aaKnown RBP18.05■□□□□ 0.48
CUX1-214ENST00000550008 TRDNQ13061 729 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 PPP1R42Q7Z4L9 355 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 ERC1Q8IUD2 1116 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 MYO5CQ9NQX4 1742 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 KIF1BPQ96EK5 621 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 CHPF2Q9P2E5 772 aa18.05■□□□□ 0.48
CUX1-214ENST00000550008 NASPP49321 788 aaPredicted RBP18.05■□□□□ 0.48
CUX1-214ENST00000550008 FKBP4Q02790 459 aaKnown RBP eCLIP18.05■□□□□ 0.48
CUX1-214ENST00000550008 LTKP29376 864 aa18.04■□□□□ 0.48
CUX1-214ENST00000550008 IL13P35225 146 aa18.04■□□□□ 0.48
CUX1-214ENST00000550008 G2E3Q7L622 706 aa18.04■□□□□ 0.48
CUX1-214ENST00000550008 JAKMIP1Q96N16 626 aaKnown RBP18.04■□□□□ 0.48
CUX1-214ENST00000550008 LRRFIP1Q32MZ4 808 aaKnown RBP18.03■□□□□ 0.48
CUX1-214ENST00000550008 NFXL1Q6ZNB6 911 aa18.03■□□□□ 0.48
CUX1-214ENST00000550008 RALYLQ86SE5 291 aaKnown RBP18.03■□□□□ 0.48
CUX1-214ENST00000550008 MAP3K2Q9Y2U5 619 aa18.03■□□□□ 0.48
CUX1-214ENST00000550008 PTPRCP08575 1304 aa18.03■□□□□ 0.48
CUX1-214ENST00000550008 MRE11P49959 708 aa18.03■□□□□ 0.48
CUX1-214ENST00000550008 DBF4Q9UBU7 674 aaPredicted RBP18.03■□□□□ 0.48
CUX1-214ENST00000550008 RASSF8Q8NHQ8 419 aa18.03■□□□□ 0.48
CUX1-214ENST00000550008 CDK11BP21127 795 aaKnown RBP18.02■□□□□ 0.48
CUX1-214ENST00000550008 SSFA2P28290 1259 aa18.02■□□□□ 0.48
CUX1-214ENST00000550008 BLMP54132 1417 aaPredicted RBP18.02■□□□□ 0.48
CUX1-214ENST00000550008 BECN2A8MW95 431 aa18.02■□□□□ 0.48
CUX1-214ENST00000550008 AMOTQ4VCS5 1084 aa18.02■□□□□ 0.48
CUX1-214ENST00000550008 ARHGAP45Q92619 1136 aa18.02■□□□□ 0.48
CUX1-214ENST00000550008 CNNM1Q9NRU3 951 aa18.02■□□□□ 0.48
CUX1-214ENST00000550008 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.02■□□□□ 0.48
CUX1-214ENST00000550008 SDSP20132 328 aa18.02■□□□□ 0.47
CUX1-214ENST00000550008 CYP46A1Q9Y6A2 500 aa18.02■□□□□ 0.47
CUX1-214ENST00000550008 KIF6Q6ZMV9 814 aa18.01■□□□□ 0.47
CUX1-214ENST00000550008 VSIG10Q8N0Z9 540 aa18.01■□□□□ 0.47
CUX1-214ENST00000550008 CHD1O14646 1710 aa18.01■□□□□ 0.47
CUX1-214ENST00000550008 ZMYM4Q5VZL5 1548 aa18.01■□□□□ 0.47
CUX1-214ENST00000550008 ZBTB3Q9H5J0 574 aa18.01■□□□□ 0.47
CUX1-214ENST00000550008 HSPA2P54652 639 aa18.01■□□□□ 0.47
CUX1-214ENST00000550008 ERVK-7P63135 1459 aa18.01■□□□□ 0.47
CUX1-214ENST00000550008 CPLX2Q6PUV4 134 aaKnown RBP18■□□□□ 0.47
CUX1-214ENST00000550008 G3V3G9 751 aa18■□□□□ 0.47
CUX1-214ENST00000550008 DCAF8Q5TAQ9 597 aa18■□□□□ 0.47
CUX1-214ENST00000550008 KDM2BQ8NHM5 1336 aa18■□□□□ 0.47
CUX1-214ENST00000550008 PSMA5P28066 241 aa18■□□□□ 0.47
CUX1-214ENST00000550008 PRPF40BQ6NWY9 871 aaKnown RBP18■□□□□ 0.47
CUX1-214ENST00000550008 FERMT3Q86UX7 667 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms