RNA–Protein interactions for RNA: ENST00000547862.6

SSH1-207, Transcript of slingshot protein phosphatase 1, humanhuman

TSL 5

Gene SSH1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH1-207ENST00000547862 LRRC4BQ9NT99 713 aa28.45■■■□□ 2.14
SSH1-207ENST00000547862 FYB1O15117 783 aa28.44■■■□□ 2.14
SSH1-207ENST00000547862 KCNQ4P56696 695 aa28.41■■■□□ 2.14
SSH1-207ENST00000547862 ZCRB1Q8TBF4 217 aaKnown RBP28.41■■■□□ 2.14
SSH1-207ENST00000547862 FHDC1Q9C0D6 1143 aaPredicted RBP28.41■■■□□ 2.14
SSH1-207ENST00000547862 NSD3Q9BZ95 1437 aa28.41■■■□□ 2.14
SSH1-207ENST00000547862 PRIM1P49642 420 aaKnown RBP28.4■■■□□ 2.14
SSH1-207ENST00000547862 NBPF6Q5VWK0 638 aa28.4■■■□□ 2.14
SSH1-207ENST00000547862 NBPF4Q96M43 638 aa28.4■■■□□ 2.14
SSH1-207ENST00000547862 NSD2O96028 1365 aa28.39■■■□□ 2.14
SSH1-207ENST00000547862 CDCA8Q53HL2 280 aa28.39■■■□□ 2.14
SSH1-207ENST00000547862 RAPGEF4Q8WZA2 1011 aa28.36■■■□□ 2.13
SSH1-207ENST00000547862 FLT4P35916 1363 aa28.36■■■□□ 2.13
SSH1-207ENST00000547862 HSP90AB2PQ58FF8 381 aa28.35■■■□□ 2.13
SSH1-207ENST00000547862 SLC27A3Q5K4L6 730 aa28.35■■■□□ 2.13
SSH1-207ENST00000547862 SGIP1Q9BQI5 828 aa28.35■■■□□ 2.13
SSH1-207ENST00000547862 KLHL34Q8N239 644 aa28.34■■■□□ 2.13
SSH1-207ENST00000547862 SYT17Q9BSW7 474 aa28.34■■■□□ 2.13
SSH1-207ENST00000547862 ANKRD26Q9UPS8 1709 aa28.34■■■□□ 2.13
SSH1-207ENST00000547862 INSRP06213 1382 aa28.34■■■□□ 2.13
SSH1-207ENST00000547862 TOGARAM1Q9Y4F4 1720 aa28.33■■■□□ 2.13
SSH1-207ENST00000547862 TATP17735 454 aaPredicted RBP28.33■■■□□ 2.13
SSH1-207ENST00000547862 AKT1S1Q96B36 256 aa28.33■■■□□ 2.13
SSH1-207ENST00000547862 ARXQ96QS3 562 aa28.33■■■□□ 2.13
SSH1-207ENST00000547862 POLR3GLQ9BT43 218 aa28.33■■■□□ 2.13
SSH1-207ENST00000547862 PCGF6Q9BYE7 350 aa28.33■■■□□ 2.13
SSH1-207ENST00000547862 C5P01031 1676 aa28.32■■■□□ 2.12
SSH1-207ENST00000547862 MAP2P11137 1827 aaKnown RBP28.32■■■□□ 2.12
SSH1-207ENST00000547862 PKD1L3Q7Z443 1732 aa28.32■■■□□ 2.12
SSH1-207ENST00000547862 EMILIN1Q9Y6C2 1016 aa28.31■■■□□ 2.12
SSH1-207ENST00000547862 PNPLA7Q6ZV29 1317 aa28.31■■■□□ 2.12
SSH1-207ENST00000547862 ITGB4P16144 1822 aa28.31■■■□□ 2.12
SSH1-207ENST00000547862 CARD14Q9BXL6 1004 aa28.3■■■□□ 2.12
SSH1-207ENST00000547862 TFCP2L1Q9NZI6 479 aa28.3■■■□□ 2.12
SSH1-207ENST00000547862 CCNL1Q9UK58 526 aaPredicted RBP28.3■■■□□ 2.12
SSH1-207ENST00000547862 CHD4Q14839 1912 aa28.3■■■□□ 2.12
SSH1-207ENST00000547862 PPM1GO15355 546 aaPredicted RBP28.29■■■□□ 2.12
SSH1-207ENST00000547862 COL24A1Q17RW2 1714 aa28.29■■■□□ 2.12
SSH1-207ENST00000547862 CGNL1Q0VF96 1302 aa28.28■■■□□ 2.12
SSH1-207ENST00000547862 PCDH11XQ9BZA7 1347 aa28.28■■■□□ 2.12
SSH1-207ENST00000547862 PCDH11YQ9BZA8 1340 aa28.28■■■□□ 2.12
SSH1-207ENST00000547862 TAF1LQ8IZX4 1826 aa28.27■■■□□ 2.12
SSH1-207ENST00000547862 KIF24Q5T7B8 1368 aa28.26■■■□□ 2.12
SSH1-207ENST00000547862 MSH5O43196 834 aa28.24■■■□□ 2.11
SSH1-207ENST00000547862 POLD1P28340 1107 aa28.24■■■□□ 2.11
SSH1-207ENST00000547862 SLC16A10Q8TF71 515 aa28.21■■■□□ 2.11
SSH1-207ENST00000547862 MAP3K5Q99683 1374 aa28.21■■■□□ 2.11
SSH1-207ENST00000547862 MPRIPQ6WCQ1 1025 aa28.2■■■□□ 2.1
SSH1-207ENST00000547862 PALLDQ8WX93 1383 aa28.2■■■□□ 2.1
SSH1-207ENST00000547862 PELP1Q8IZL8 1130 aaKnown RBP28.19■■■□□ 2.1
SSH1-207ENST00000547862 CYP27B1O15528 508 aa28.18■■■□□ 2.1
SSH1-207ENST00000547862 MSL1Q68DK7 614 aa28.17■■■□□ 2.1
SSH1-207ENST00000547862 TIMELESSQ9UNS1 1208 aa28.17■■■□□ 2.1
SSH1-207ENST00000547862 C4BP0C0L5 1744 aa28.17■■■□□ 2.1
SSH1-207ENST00000547862 TNNT2P45379 298 aaPredicted RBP28.16■■■□□ 2.1
SSH1-207ENST00000547862 CLSPNQ9HAW4 1339 aa28.16■■■□□ 2.1
SSH1-207ENST00000547862 UTRNP46939 3433 aa28.15■■■□□ 2.1
SSH1-207ENST00000547862 GPR162Q16538 588 aa28.15■■■□□ 2.1
SSH1-207ENST00000547862 NCAPD2Q15021 1401 aa28.15■■■□□ 2.1
SSH1-207ENST00000547862 COL23A1Q86Y22 540 aaPredicted RBP28.14■■■□□ 2.1
SSH1-207ENST00000547862 NLGN2Q8NFZ4 835 aa28.12■■■□□ 2.09
SSH1-207ENST00000547862 UBR3Q6ZT12 1888 aa28.11■■■□□ 2.09
SSH1-207ENST00000547862 ZNF784Q8NCA9 323 aaPredicted RBP28.11■■■□□ 2.09
SSH1-207ENST00000547862 WASHC2AQ641Q2 1341 aa28.11■■■□□ 2.09
SSH1-207ENST00000547862 EYA1Q99502 592 aa28.1■■■□□ 2.09
SSH1-207ENST00000547862 SPG7Q9UQ90 795 aa28.1■■■□□ 2.09
SSH1-207ENST00000547862 POLKQ9UBT6 870 aa28.09■■■□□ 2.09
SSH1-207ENST00000547862 HSPA5P11021 654 aaKnown RBP28.08■■■□□ 2.09
SSH1-207ENST00000547862 EIF4G2P78344 907 aaKnown RBP eCLIP28.06■■■□□ 2.08
SSH1-207ENST00000547862 AK7Q96M32 723 aa28.06■■■□□ 2.08
SSH1-207ENST00000547862 PHF14O94880 888 aa28.05■■■□□ 2.08
SSH1-207ENST00000547862 PIGBQ92521 554 aa28.05■■■□□ 2.08
SSH1-207ENST00000547862 SMARCC1Q92922 1105 aaPredicted RBP28.05■■■□□ 2.08
SSH1-207ENST00000547862 EIF4A2Q14240 407 aaKnown RBP28.04■■■□□ 2.08
SSH1-207ENST00000547862 SMIM5Q71RC9 77 aa28.03■■■□□ 2.08
SSH1-207ENST00000547862 CCER1Q8TC90 406 aaPredicted RBP28.03■■■□□ 2.08
SSH1-207ENST00000547862 TMOD3Q9NYL9 352 aa28.03■■■□□ 2.08
SSH1-207ENST00000547862 PANK3Q9H999 370 aa28.01■■■□□ 2.07
SSH1-207ENST00000547862 GOLGB1Q14789 3259 aaKnown RBP28■■■□□ 2.07
SSH1-207ENST00000547862 PHKG2P15735 406 aa28■■■□□ 2.07
SSH1-207ENST00000547862 NKX1-1Q15270 411 aaPredicted RBP28■■■□□ 2.07
SSH1-207ENST00000547862 AMIGO3Q86WK7 504 aa28■■■□□ 2.07
SSH1-207ENST00000547862 IFNL2Q8IZJ0 200 aa27.99■■■□□ 2.07
SSH1-207ENST00000547862 FLAD1Q8NFF5 587 aa27.99■■■□□ 2.07
SSH1-207ENST00000547862 LOC102724428A0A0B4J2F2 783 aa27.97■■■□□ 2.07
SSH1-207ENST00000547862 SIK1P57059 783 aa27.97■■■□□ 2.07
SSH1-207ENST00000547862 LINC00116Q8NCU8 138 aa27.97■■■□□ 2.07
SSH1-207ENST00000547862 ASAP1Q9ULH1 1129 aa27.97■■■□□ 2.07
SSH1-207ENST00000547862 YBX3P16989 372 aaKnown RBP eCLIP27.96■■■□□ 2.07
SSH1-207ENST00000547862 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.96■■■□□ 2.07
SSH1-207ENST00000547862 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.95■■■□□ 2.06
SSH1-207ENST00000547862 HMGB2P26583 209 aaKnown RBP27.95■■■□□ 2.06
SSH1-207ENST00000547862 IGSF1Q8N6C5 1336 aa27.94■■■□□ 2.06
SSH1-207ENST00000547862 ITPK1Q13572 414 aa27.93■■■□□ 2.06
SSH1-207ENST00000547862 GNPATO15228 680 aa27.92■■■□□ 2.06
SSH1-207ENST00000547862 ATP6V1AP38606 617 aa27.92■■■□□ 2.06
SSH1-207ENST00000547862 MORC1Q86VD1 984 aa27.91■■■□□ 2.06
SSH1-207ENST00000547862 WWC3Q9ULE0 1092 aa27.91■■■□□ 2.06
SSH1-207ENST00000547862 COL5A3P25940 1745 aaPredicted RBP27.91■■■□□ 2.06
SSH1-207ENST00000547862 SSFA2P28290 1259 aa27.89■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms