RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 BICD2Q8TD16 824 aa18.93■□□□□ 0.62
CUX1-211ENST00000546411 PHF8Q9UPP1 1060 aa18.93■□□□□ 0.62
CUX1-211ENST00000546411 ATP10AO60312 1499 aa18.93■□□□□ 0.62
CUX1-211ENST00000546411 ZMYM4Q5VZL5 1548 aa18.93■□□□□ 0.62
CUX1-211ENST00000546411 KDM4AO75164 1064 aa18.92■□□□□ 0.62
CUX1-211ENST00000546411 AACSQ86V21 672 aa18.92■□□□□ 0.62
CUX1-211ENST00000546411 RSPH6AQ9H0K4 717 aa18.92■□□□□ 0.62
CUX1-211ENST00000546411 TNPO1Q92973 898 aaKnown RBP18.92■□□□□ 0.62
CUX1-211ENST00000546411 GRPEL1Q9HAV7 217 aa18.92■□□□□ 0.62
CUX1-211ENST00000546411 NPC1L1Q9UHC9 1359 aa18.92■□□□□ 0.62
CUX1-211ENST00000546411 STK3Q13188 491 aa18.92■□□□□ 0.62
CUX1-211ENST00000546411 NRDCO43847 1150 aa18.91■□□□□ 0.62
CUX1-211ENST00000546411 NPATQ14207 1427 aa18.91■□□□□ 0.62
CUX1-211ENST00000546411 CCDC85AQ96PX6 553 aaPredicted RBP18.91■□□□□ 0.62
CUX1-211ENST00000546411 TTC37Q6PGP7 1564 aa18.91■□□□□ 0.62
CUX1-211ENST00000546411 RIMS2Q9UQ26 1411 aa18.9■□□□□ 0.62
CUX1-211ENST00000546411 TATP17735 454 aaPredicted RBP18.9■□□□□ 0.62
CUX1-211ENST00000546411 WASHC4Q2M389 1173 aa18.9■□□□□ 0.62
CUX1-211ENST00000546411 YTHDC2Q9H6S0 1430 aaKnown RBP18.9■□□□□ 0.62
CUX1-211ENST00000546411 FAM43AQ8N2R8 423 aa18.9■□□□□ 0.62
CUX1-211ENST00000546411 ARHGEF5Q12774 1597 aa18.89■□□□□ 0.61
CUX1-211ENST00000546411 MTHFSDQ2M296 383 aaKnown RBP18.88■□□□□ 0.61
CUX1-211ENST00000546411 ERCC6L2Q5T890 1561 aa18.88■□□□□ 0.61
CUX1-211ENST00000546411 BCORL1Q5H9F3 1711 aa18.88■□□□□ 0.61
CUX1-211ENST00000546411 KIF3AQ9Y496 699 aa18.88■□□□□ 0.61
CUX1-211ENST00000546411 PI4KAP2A4QPH2 592 aa18.87■□□□□ 0.61
CUX1-211ENST00000546411 PTCD1O75127 700 aaKnown RBP18.87■□□□□ 0.61
CUX1-211ENST00000546411 SDSP20132 328 aa18.87■□□□□ 0.61
CUX1-211ENST00000546411 SMC5Q8IY18 1101 aa18.87■□□□□ 0.61
CUX1-211ENST00000546411 PI4KAP1Q8N8J0 262 aa18.87■□□□□ 0.61
CUX1-211ENST00000546411 CEBPZQ03701 1054 aaKnown RBP18.87■□□□□ 0.61
CUX1-211ENST00000546411 JARID2Q92833 1246 aaPredicted RBP18.87■□□□□ 0.61
CUX1-211ENST00000546411 BCL11BQ9C0K0 894 aaPredicted RBP18.87■□□□□ 0.61
CUX1-211ENST00000546411 TNRQ92752 1358 aa18.87■□□□□ 0.61
CUX1-211ENST00000546411 CPLX1O14810 134 aa18.86■□□□□ 0.61
CUX1-211ENST00000546411 TOM1L2Q6ZVM7 507 aa18.86■□□□□ 0.61
CUX1-211ENST00000546411 CIZ1Q9ULV3 898 aaPredicted RBP18.86■□□□□ 0.61
CUX1-211ENST00000546411 CABP4P57796 275 aa18.86■□□□□ 0.61
CUX1-211ENST00000546411 PUS7Q96PZ0 661 aaKnown RBP18.86■□□□□ 0.61
CUX1-211ENST00000546411 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.86■□□□□ 0.61
CUX1-211ENST00000546411 UHRF1BP1LA0JNW5 1464 aa18.86■□□□□ 0.61
CUX1-211ENST00000546411 BECN2A8MW95 431 aa18.85■□□□□ 0.61
CUX1-211ENST00000546411 JAKMIP1Q96N16 626 aaKnown RBP18.85■□□□□ 0.61
CUX1-211ENST00000546411 MCM2P49736 904 aa18.85■□□□□ 0.61
CUX1-211ENST00000546411 CREBRFQ8IUR6 639 aa18.85■□□□□ 0.61
CUX1-211ENST00000546411 ARHGAP45Q92619 1136 aa18.85■□□□□ 0.61
CUX1-211ENST00000546411 OTUD7AQ8TE49 926 aaPredicted RBP18.85■□□□□ 0.61
CUX1-211ENST00000546411 CCDC8Q9H0W5 538 aaPredicted RBP18.85■□□□□ 0.61
CUX1-211ENST00000546411 SPG7Q9UQ90 795 aa18.85■□□□□ 0.61
CUX1-211ENST00000546411 GDPD2Q9HCC8 539 aa18.85■□□□□ 0.61
CUX1-211ENST00000546411 TTC22Q5TAA0 569 aa18.84■□□□□ 0.61
CUX1-211ENST00000546411 BOLA2Q9H3K6 86 aa18.84■□□□□ 0.61
CUX1-211ENST00000546411 HSP90AA2PQ14568 343 aaPredicted RBP18.84■□□□□ 0.61
CUX1-211ENST00000546411 ZBTB7BO15156 539 aaPredicted RBP18.84■□□□□ 0.61
CUX1-211ENST00000546411 PPP1R42Q7Z4L9 355 aa18.84■□□□□ 0.61
CUX1-211ENST00000546411 FERMT3Q86UX7 667 aa18.84■□□□□ 0.61
CUX1-211ENST00000546411 CWC22Q9HCG8 908 aaKnown RBP18.84■□□□□ 0.61
CUX1-211ENST00000546411 PRDM11Q9NQV5 511 aa18.84■□□□□ 0.61
CUX1-211ENST00000546411 G2E3Q7L622 706 aa18.83■□□□□ 0.61
CUX1-211ENST00000546411 DNAAF4Q8WXU2 420 aa18.83■□□□□ 0.61
CUX1-211ENST00000546411 KIF1BPQ96EK5 621 aa18.83■□□□□ 0.61
CUX1-211ENST00000546411 ZNF521Q96K83 1311 aa18.83■□□□□ 0.61
CUX1-211ENST00000546411 GOLGA6L19H0YKK7 550 aa18.83■□□□□ 0.61
CUX1-211ENST00000546411 PTPRCP08575 1304 aa18.83■□□□□ 0.6
CUX1-211ENST00000546411 CYP46A1Q9Y6A2 500 aa18.83■□□□□ 0.6
CUX1-211ENST00000546411 EYA1Q99502 592 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 FAM13BQ9NYF5 915 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 ABCC1P33527 1531 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 MAP3K19Q56UN5 1328 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 IL13P35225 146 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 ANKRD44Q8N8A2 993 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 LRRC59Q96AG4 307 aaKnown RBP18.82■□□□□ 0.6
CUX1-211ENST00000546411 PPP6R1Q9UPN7 881 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 CASTP20810 708 aaKnown RBP18.82■□□□□ 0.6
CUX1-211ENST00000546411 ERVK-7P63135 1459 aa18.82■□□□□ 0.6
CUX1-211ENST00000546411 SYCE3A1L190 88 aa18.81■□□□□ 0.6
CUX1-211ENST00000546411 MBD3O95983 291 aa18.81■□□□□ 0.6
CUX1-211ENST00000546411 KCNH5Q8NCM2 988 aa18.81■□□□□ 0.6
CUX1-211ENST00000546411 ERC1Q8IUD2 1116 aa18.81■□□□□ 0.6
CUX1-211ENST00000546411 PRPF40BQ6NWY9 871 aaKnown RBP18.8■□□□□ 0.6
CUX1-211ENST00000546411 POGZQ7Z3K3 1410 aa18.8■□□□□ 0.6
CUX1-211ENST00000546411 LRRIQ1Q96JM4 1722 aa18.8■□□□□ 0.6
CUX1-211ENST00000546411 PIP4K2AP48426 406 aaPredicted RBP18.8■□□□□ 0.6
CUX1-211ENST00000546411 PANK2Q9BZ23 570 aa18.8■□□□□ 0.6
CUX1-211ENST00000546411 R3HCC1Q9Y3T6 440 aaKnown RBP18.8■□□□□ 0.6
CUX1-211ENST00000546411 PSMA5P28066 241 aa18.79■□□□□ 0.6
CUX1-211ENST00000546411 CHPF2Q9P2E5 772 aa18.79■□□□□ 0.6
CUX1-211ENST00000546411 KDM5DQ9BY66 1539 aa18.79■□□□□ 0.6
CUX1-211ENST00000546411 YEATS2Q9ULM3 1422 aa18.79■□□□□ 0.6
CUX1-211ENST00000546411 CHRNA2Q15822 529 aa18.79■□□□□ 0.6
CUX1-211ENST00000546411 TRMT2AQ8IZ69 625 aaKnown RBP18.79■□□□□ 0.6
CUX1-211ENST00000546411 ZMYM3Q14202 1370 aa18.79■□□□□ 0.6
CUX1-211ENST00000546411 TRDNQ13061 729 aa18.79■□□□□ 0.6
CUX1-211ENST00000546411 KCNA6P17658 529 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 PDE1AP54750 535 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 CCDC83Q8IWF9 413 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 CEP85Q6P2H3 762 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 RALYLQ86SE5 291 aaKnown RBP18.78■□□□□ 0.6
CUX1-211ENST00000546411 MYD88Q99836 296 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 CDC42BPAQ5VT25 1732 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms