RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 DCAF8L1A6NGE4 600 aa12.86□□□□□ -0.35
YBX3-218ENST00000546298 LTN1O94822 1766 aa12.86□□□□□ -0.35
YBX3-218ENST00000546298 RREB1Q92766 1687 aa12.86□□□□□ -0.35
YBX3-218ENST00000546298 PCDH11XQ9BZA7 1347 aa12.86□□□□□ -0.35
YBX3-218ENST00000546298 PCDH11YQ9BZA8 1340 aa12.86□□□□□ -0.35
YBX3-218ENST00000546298 ZBTB7AO95365 584 aa12.85□□□□□ -0.35
YBX3-218ENST00000546298 POLKQ9UBT6 870 aa12.85□□□□□ -0.35
YBX3-218ENST00000546298 MEGF6O75095 1541 aa12.84□□□□□ -0.35
YBX3-218ENST00000546298 WNK3Q9BYP7 1800 aa12.84□□□□□ -0.35
YBX3-218ENST00000546298 MTFR1LQ9H019 292 aa12.84□□□□□ -0.35
YBX3-218ENST00000546298 SPG7Q9UQ90 795 aa12.84□□□□□ -0.35
YBX3-218ENST00000546298 NUP188Q5SRE5 1749 aa12.84□□□□□ -0.35
YBX3-218ENST00000546298 TNNT2P45379 298 aaPredicted RBP12.83□□□□□ -0.36
YBX3-218ENST00000546298 LRRC4BQ9NT99 713 aa12.83□□□□□ -0.36
YBX3-218ENST00000546298 ATF5Q9Y2D1 282 aaPredicted RBP12.83□□□□□ -0.36
YBX3-218ENST00000546298 KNSTRNQ9Y448 316 aa12.83□□□□□ -0.36
YBX3-218ENST00000546298 RGPD3A6NKT7 1758 aaPredicted RBP12.83□□□□□ -0.36
YBX3-218ENST00000546298 RGPD4Q7Z3J3 1758 aa12.83□□□□□ -0.36
YBX3-218ENST00000546298 NSD2O96028 1365 aa12.82□□□□□ -0.36
YBX3-218ENST00000546298 MORC1Q86VD1 984 aa12.82□□□□□ -0.36
YBX3-218ENST00000546298 EYA1Q99502 592 aa12.82□□□□□ -0.36
YBX3-218ENST00000546298 PDGFDQ9GZP0 370 aaPredicted RBP12.82□□□□□ -0.36
YBX3-218ENST00000546298 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.82□□□□□ -0.361e-6■■□□□ 12.9
YBX3-218ENST00000546298 FAM208AQ9UK61 1670 aaKnown RBP12.82□□□□□ -0.36
YBX3-218ENST00000546298 CYP27B1O15528 508 aa12.81□□□□□ -0.36
YBX3-218ENST00000546298 SLC16A10Q8TF71 515 aa12.81□□□□□ -0.36
YBX3-218ENST00000546298 AKT1S1Q96B36 256 aa12.81□□□□□ -0.36
YBX3-218ENST00000546298 CCNL1Q9UK58 526 aaPredicted RBP12.81□□□□□ -0.36
YBX3-218ENST00000546298 SBF2Q86WG5 1849 aa12.81□□□□□ -0.36
YBX3-218ENST00000546298 NHSQ6T4R5 1651 aa12.8□□□□□ -0.36
YBX3-218ENST00000546298 PTGER2P43116 358 aa12.8□□□□□ -0.36
YBX3-218ENST00000546298 ZNF827Q17R98 1081 aa12.8□□□□□ -0.36
YBX3-218ENST00000546298 SMARCC1Q92922 1105 aaPredicted RBP12.8□□□□□ -0.36
YBX3-218ENST00000546298 TFCP2L1Q9NZI6 479 aa12.8□□□□□ -0.36
YBX3-218ENST00000546298 EIF4A2Q14240 407 aaKnown RBP12.79□□□□□ -0.36
YBX3-218ENST00000546298 NKX1-1Q15270 411 aaPredicted RBP12.79□□□□□ -0.36
YBX3-218ENST00000546298 MPRIPQ6WCQ1 1025 aa12.79□□□□□ -0.36
YBX3-218ENST00000546298 IFNL2Q8IZJ0 200 aa12.78□□□□□ -0.36
YBX3-218ENST00000546298 KCNQ4P56696 695 aa12.77□□□□□ -0.37
YBX3-218ENST00000546298 ARXQ96QS3 562 aa12.77□□□□□ -0.37
YBX3-218ENST00000546298 NCAPD2Q15021 1401 aa12.77□□□□□ -0.37
YBX3-218ENST00000546298 MYOM1P52179 1685 aa12.77□□□□□ -0.37
YBX3-218ENST00000546298 POLD1P28340 1107 aa12.76□□□□□ -0.37
YBX3-218ENST00000546298 PLEKHO1Q53GL0 409 aaPredicted RBP12.76□□□□□ -0.37
YBX3-218ENST00000546298 FLAD1Q8NFF5 587 aa12.76□□□□□ -0.37
YBX3-218ENST00000546298 SGIP1Q9BQI5 828 aa12.76□□□□□ -0.37
YBX3-218ENST00000546298 KIF7Q2M1P5 1343 aa12.76□□□□□ -0.37
YBX3-218ENST00000546298 PLEKHG2Q9H7P9 1386 aa12.76□□□□□ -0.37
YBX3-218ENST00000546298 HSP90AB1P08238 724 aaKnown RBP12.75□□□□□ -0.37
YBX3-218ENST00000546298 PHKG2P15735 406 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 PNPLA7Q6ZV29 1317 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 IGSF1Q8N6C5 1336 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 PALLDQ8WX93 1383 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 PIGBQ92521 554 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 KIF20BQ96Q89 1820 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 SYT17Q9BSW7 474 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 FHDC1Q9C0D6 1143 aaPredicted RBP12.75□□□□□ -0.37
YBX3-218ENST00000546298 TMOD3Q9NYL9 352 aa12.75□□□□□ -0.37
YBX3-218ENST00000546298 AMOTQ4VCS5 1084 aa12.74□□□□□ -0.37
YBX3-218ENST00000546298 AMER1Q5JTC6 1135 aaPredicted RBP12.73□□□□□ -0.37
YBX3-218ENST00000546298 KAT6BQ8WYB5 2073 aa12.73□□□□□ -0.37
YBX3-218ENST00000546298 BTAF1O14981 1849 aa12.72□□□□□ -0.37
YBX3-218ENST00000546298 DCAF5Q96JK2 942 aa12.72□□□□□ -0.37
YBX3-218ENST00000546298 CASZ1Q86V15 1759 aa12.71□□□□□ -0.37
YBX3-218ENST00000546298 PAPPAQ13219 1627 aa12.71□□□□□ -0.37
YBX3-218ENST00000546298 ERVV-2B6SEH9 535 aa12.71□□□□□ -0.37
YBX3-218ENST00000546298 YY1P25490 414 aa12.71□□□□□ -0.37
YBX3-218ENST00000546298 ZNF530Q6P9A1 599 aaPredicted RBP12.71□□□□□ -0.37
YBX3-218ENST00000546298 COL23A1Q86Y22 540 aaPredicted RBP12.71□□□□□ -0.37
YBX3-218ENST00000546298 AK7Q96M32 723 aa12.71□□□□□ -0.37
YBX3-218ENST00000546298 MAP3K5Q99683 1374 aa12.7□□□□□ -0.38
YBX3-218ENST00000546298 LOC102724428A0A0B4J2F2 783 aa12.7□□□□□ -0.38
YBX3-218ENST00000546298 PER1O15534 1290 aaPredicted RBP12.7□□□□□ -0.38
YBX3-218ENST00000546298 SIK1P57059 783 aa12.7□□□□□ -0.38
YBX3-218ENST00000546298 C1orf141Q5JVX7 400 aa12.7□□□□□ -0.38
YBX3-218ENST00000546298 SULT6B1Q6IMI4 303 aa12.7□□□□□ -0.38
YBX3-218ENST00000546298 IL13P35225 146 aa12.69□□□□□ -0.38
YBX3-218ENST00000546298 MTHFSP49914 203 aa12.69□□□□□ -0.38
YBX3-218ENST00000546298 KLHL34Q8N239 644 aa12.69□□□□□ -0.38
YBX3-218ENST00000546298 ASAP1Q9ULH1 1129 aa12.69□□□□□ -0.38
YBX3-218ENST00000546298 SRCAPQ6ZRS2 3230 aa12.69□□□□□ -0.38
YBX3-218ENST00000546298 RGPD2P0DJD1 1756 aa12.69□□□□□ -0.38
YBX3-218ENST00000546298 ATP6V1AP38606 617 aa12.68□□□□□ -0.38
YBX3-218ENST00000546298 CABP4P57796 275 aa12.68□□□□□ -0.38
YBX3-218ENST00000546298 CC2D1BQ5T0F9 858 aaKnown RBP12.68□□□□□ -0.38
YBX3-218ENST00000546298 AEBP1Q8IUX7 1158 aa12.68□□□□□ -0.38
YBX3-218ENST00000546298 ATG3Q9NT62 314 aa12.68□□□□□ -0.38
YBX3-218ENST00000546298 DOT1LQ8TEK3 1739 aa12.68□□□□□ -0.38
YBX3-218ENST00000546298 ANKRD26Q9UPS8 1709 aa12.66□□□□□ -0.38
YBX3-218ENST00000546298 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.66□□□□□ -0.38
YBX3-218ENST00000546298 SSFA2P28290 1259 aa12.66□□□□□ -0.38
YBX3-218ENST00000546298 GPR162Q16538 588 aa12.66□□□□□ -0.38
YBX3-218ENST00000546298 NPC1L1Q9UHC9 1359 aa12.66□□□□□ -0.38
YBX3-218ENST00000546298 SHANK3Q9BYB0 1731 aa12.65□□□□□ -0.38
YBX3-218ENST00000546298 DIAPH1O60610 1272 aaKnown RBP12.65□□□□□ -0.38
YBX3-218ENST00000546298 PHF14O94880 888 aa12.65□□□□□ -0.38
YBX3-218ENST00000546298 MSL1Q68DK7 614 aa12.65□□□□□ -0.38
YBX3-218ENST00000546298 RBM42Q9BTD8 480 aaKnown RBP12.65□□□□□ -0.38
YBX3-218ENST00000546298 KDRP35968 1356 aa12.65□□□□□ -0.38
YBX3-218ENST00000546298 GNPATO15228 680 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms