RNA–Protein interactions for RNA: ENST00000546120.2

UBC-213, Transcript of ubiquitin C, human

TSL 5 BASIC

Gene UBC, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBC-213	ENST00000546120	CTNNA3	Q9UI47	895 aa		12.24	□□□□□ -0.45
UBC-213	ENST00000546120	CCDC171	Q6TFL3	1326 aa		12.23	□□□□□ -0.45
UBC-213	ENST00000546120	ARID3C	A6NKF2	412 aa		12.23	□□□□□ -0.45
UBC-213	ENST00000546120	TULP2	O00295	520 aa		12.23	□□□□□ -0.45
UBC-213	ENST00000546120	ATP8B1	O43520	1251 aa		12.23	□□□□□ -0.45
UBC-213	ENST00000546120	FCHSD2	O94868	740 aa		12.23	□□□□□ -0.45
UBC-213	ENST00000546120	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.23	□□□□□ -0.45
UBC-213	ENST00000546120	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.23	□□□□□ -0.45
UBC-213	ENST00000546120	LMOD3	Q0VAK6	560 aa		12.23	□□□□□ -0.45
UBC-213	ENST00000546120	TERF2	Q15554	542 aa		12.23	□□□□□ -0.45
UBC-213	ENST00000546120	ZNF397	Q8NF99	534 aa	Predicted RBP	12.23	□□□□□ -0.45
UBC-213	ENST00000546120	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.23	□□□□□ -0.45
UBC-213	ENST00000546120	FAM135B	Q49AJ0	1406 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	ABCC4	O15439	1325 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	HMMR	O75330	724 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	TEX35	Q5T0J7	233 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	PLEKHM2	Q8IWE5	1019 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	CCDC112	Q8NEF3	446 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	PLEKHF1	Q96S99	279 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	KCND1	Q9NSA2	647 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	FAM53C	Q9NYF3	392 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	ZDHHC9	Q9Y397	364 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120		V9GYY5	206 aa	Predicted RBP	12.22	□□□□□ -0.45
UBC-213	ENST00000546120	MAP3K4	Q9Y6R4	1608 aa		12.22	□□□□□ -0.45
UBC-213	ENST00000546120	FANCA	O15360	1455 aa		12.21	□□□□□ -0.45
UBC-213	ENST00000546120	RTL1	A6NKG5	1358 aa		12.21	□□□□□ -0.45
UBC-213	ENST00000546120	RIOK3	O14730	519 aa	Known RBP	12.21	□□□□□ -0.45
UBC-213	ENST00000546120	SLFN14	P0C7P3	912 aa		12.21	□□□□□ -0.45
UBC-213	ENST00000546120	CCDC192	P0DO97	292 aa		12.21	□□□□□ -0.45
UBC-213	ENST00000546120	GNAI1	P63096	354 aa		12.21	□□□□□ -0.45
UBC-213	ENST00000546120	BMS1	Q14692	1282 aa	Known RBP	12.21	□□□□□ -0.45
UBC-213	ENST00000546120	NEUROD2	Q15784	382 aa		12.21	□□□□□ -0.45
UBC-213	ENST00000546120	BCL2L13	Q9BXK5	485 aa		12.21	□□□□□ -0.45
UBC-213	ENST00000546120	TPM1	P09493	284 aa		12.2	□□□□□ -0.46
UBC-213	ENST00000546120	CDC25B	P30305	580 aa		12.2	□□□□□ -0.46
UBC-213	ENST00000546120	SRCIN1	Q9C0H9	1055 aa		12.2	□□□□□ -0.46
UBC-213	ENST00000546120	GLI2	P10070	1586 aa		12.2	□□□□□ -0.46
UBC-213	ENST00000546120	INO80	Q9ULG1	1556 aa	Predicted RBP	12.19	□□□□□ -0.46
UBC-213	ENST00000546120	GPS2	Q13227	327 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	KIF18A	Q8NI77	898 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	TMX3	Q96JJ7	454 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.19	□□□□□ -0.46	3e-12	■□□□□ 10.6
UBC-213	ENST00000546120	FOXD4L1	Q9NU39	408 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	IFT57	Q9NWB7	429 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	TRIM35	Q9UPQ4	493 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	ARAP3	Q8WWN8	1544 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	CDC42BPB	Q9Y5S2	1711 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	TET3	O43151	1660 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	ZFYVE9	O95405	1425 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	ABCA6	Q8N139	1617 aa		12.19	□□□□□ -0.46
UBC-213	ENST00000546120	ELP1	O95163	1332 aa		12.18	□□□□□ -0.46
UBC-213	ENST00000546120	EVC2	Q86UK5	1308 aa		12.18	□□□□□ -0.46
UBC-213	ENST00000546120	AEBP1	Q8IUX7	1158 aa		12.18	□□□□□ -0.46
UBC-213	ENST00000546120	ERO1A	Q96HE7	468 aa		12.18	□□□□□ -0.46
UBC-213	ENST00000546120	CWC15	Q9P013	229 aa	Known RBP	12.18	□□□□□ -0.46
UBC-213	ENST00000546120	RBM27	Q9P2N5	1060 aa	Known RBP	12.18	□□□□□ -0.46
UBC-213	ENST00000546120	TNN	Q9UQP3	1299 aa		12.18	□□□□□ -0.46
UBC-213	ENST00000546120	PPRC1	Q5VV67	1664 aa	Known RBP	12.18	□□□□□ -0.46
UBC-213	ENST00000546120	ABCA9	Q8IUA7	1624 aa		12.18	□□□□□ -0.46
UBC-213	ENST00000546120	ARHGAP5	Q13017	1502 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	AOX1	Q06278	1338 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	RAD50	Q92878	1312 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	NCBP1	Q09161	790 aa	Known RBP	12.17	□□□□□ -0.46
UBC-213	ENST00000546120	EFCAB2	Q5VUJ9	269 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	TXLNB	Q8N3L3	684 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	MRPL50	Q8N5N7	158 aa	Known RBP	12.17	□□□□□ -0.46
UBC-213	ENST00000546120	ANKRD44	Q8N8A2	993 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	RNF214	Q8ND24	703 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	RBM42	Q9BTD8	480 aa	Known RBP	12.17	□□□□□ -0.46
UBC-213	ENST00000546120	RRP7A	Q9Y3A4	280 aa	Known RBP	12.17	□□□□□ -0.46
UBC-213	ENST00000546120	RGS12	O14924	1447 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	PNPLA6	Q8IY17	1366 aa		12.17	□□□□□ -0.46
UBC-213	ENST00000546120	SYCP2	Q9BX26	1530 aa		12.16	□□□□□ -0.46
UBC-213	ENST00000546120	CCP110	O43303	1012 aa		12.16	□□□□□ -0.46
UBC-213	ENST00000546120	KCNJ4	P48050	445 aa		12.16	□□□□□ -0.46
UBC-213	ENST00000546120	TPM4	P67936	248 aa		12.16	□□□□□ -0.46
UBC-213	ENST00000546120	MUM1L1	Q5H9M0	696 aa		12.16	□□□□□ -0.46
UBC-213	ENST00000546120	FAM200A	Q8TCP9	573 aa		12.16	□□□□□ -0.46
UBC-213	ENST00000546120	CDC42BPG	Q6DT37	1551 aa		12.16	□□□□□ -0.46
UBC-213	ENST00000546120	DEPDC5	O75140	1603 aa		12.15	□□□□□ -0.46
UBC-213	ENST00000546120	SPAG9	O60271	1321 aa	Known RBP	12.15	□□□□□ -0.46
UBC-213	ENST00000546120	VWDE	Q8N2E2	1590 aa		12.15	□□□□□ -0.46
UBC-213	ENST00000546120	GSPT1	P15170	499 aa	Known RBP	12.15	□□□□□ -0.46
UBC-213	ENST00000546120	U2AF2	P26368	475 aa	Known RBP eCLIP	12.15	□□□□□ -0.46
UBC-213	ENST00000546120	NEK4	P51957	841 aa		12.15	□□□□□ -0.46
UBC-213	ENST00000546120	IRX5	P78411	483 aa	Predicted RBP	12.15	□□□□□ -0.46
UBC-213	ENST00000546120	USP48	Q86UV5	1035 aa		12.15	□□□□□ -0.46
UBC-213	ENST00000546120	ZSCAN31	Q96LW9	406 aa	Predicted RBP	12.15	□□□□□ -0.46
UBC-213	ENST00000546120	ARGLU1	Q9NWB6	273 aa	Predicted RBP	12.15	□□□□□ -0.46
UBC-213	ENST00000546120	NRDC	O43847	1150 aa		12.14	□□□□□ -0.47
UBC-213	ENST00000546120	KCNJ6	P48051	423 aa		12.14	□□□□□ -0.47
UBC-213	ENST00000546120	TUBB4B	P68371	445 aa		12.14	□□□□□ -0.47
UBC-213	ENST00000546120	IRX3	P78415	501 aa	Predicted RBP	12.14	□□□□□ -0.47
UBC-213	ENST00000546120	GOLGA6L1	Q8N7Z2	621 aa		12.14	□□□□□ -0.47
UBC-213	ENST00000546120	FUCA2	Q9BTY2	467 aa		12.14	□□□□□ -0.47
UBC-213	ENST00000546120	SRRT	Q9BXP5	876 aa	Known RBP	12.14	□□□□□ -0.47
UBC-213	ENST00000546120	TTC12	Q9H892	705 aa	Predicted RBP	12.14	□□□□□ -0.47
UBC-213	ENST00000546120	PTPRC	P08575	1304 aa		12.13	□□□□□ -0.47
UBC-213	ENST00000546120	PLCH2	O75038	1416 aa		12.13	□□□□□ -0.47
UBC-213	ENST00000546120	SPDYE4	A6NLX3	237 aa		12.13	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms