RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 EYA1Q99502 592 aa18.02■□□□□ 0.48
DDX55-213ENST00000545042 NPC1L1Q9UHC9 1359 aa18.01■□□□□ 0.47
DDX55-213ENST00000545042 KCNQ2O43526 872 aa18■□□□□ 0.47
DDX55-213ENST00000545042 PTF1AQ7RTS3 328 aa18■□□□□ 0.47
DDX55-213ENST00000545042 NHSQ6T4R5 1651 aa17.99■□□□□ 0.47
DDX55-213ENST00000545042 PCDH11XQ9BZA7 1347 aa17.99■□□□□ 0.47
DDX55-213ENST00000545042 PCDH11YQ9BZA8 1340 aa17.99■□□□□ 0.47
DDX55-213ENST00000545042 NBPF14Q5TI25 921 aa17.99■□□□□ 0.47
DDX55-213ENST00000545042 SPG7Q9UQ90 795 aa17.99■□□□□ 0.47
DDX55-213ENST00000545042 KAT6BQ8WYB5 2073 aa17.99■□□□□ 0.47
DDX55-213ENST00000545042 NCAPD2Q15021 1401 aa17.98■□□□□ 0.47
DDX55-213ENST00000545042 CNGB1Q14028 1251 aaPredicted RBP17.98■□□□□ 0.47
DDX55-213ENST00000545042 RGPD3A6NKT7 1758 aaPredicted RBP17.98■□□□□ 0.47
DDX55-213ENST00000545042 RGPD4Q7Z3J3 1758 aa17.98■□□□□ 0.47
DDX55-213ENST00000545042 SYTL4Q96C24 671 aaPredicted RBP17.97■□□□□ 0.47
DDX55-213ENST00000545042 RREB1Q92766 1687 aa17.96■□□□□ 0.47
DDX55-213ENST00000545042 PSDA5PKW4 1024 aaPredicted RBP17.96■□□□□ 0.47
DDX55-213ENST00000545042 MTHFSP49914 203 aa17.96■□□□□ 0.47
DDX55-213ENST00000545042 IGSF1Q8N6C5 1336 aa17.96■□□□□ 0.46
DDX55-213ENST00000545042 SHANK3Q9BYB0 1731 aa17.95■□□□□ 0.46
DDX55-213ENST00000545042 R3HDM1Q15032 1099 aaKnown RBP17.95■□□□□ 0.46
DDX55-213ENST00000545042 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.95■□□□□ 0.46
DDX55-213ENST00000545042 ZEB1P37275 1124 aaPredicted RBP17.94■□□□□ 0.46
DDX55-213ENST00000545042 PRIM1P49642 420 aaKnown RBP17.94■□□□□ 0.46
DDX55-213ENST00000545042 TXNRD1Q16881 649 aa17.94■□□□□ 0.46
DDX55-213ENST00000545042 PLEKHG2Q9H7P9 1386 aa17.93■□□□□ 0.46
DDX55-213ENST00000545042 NUP188Q5SRE5 1749 aa17.93■□□□□ 0.46
DDX55-213ENST00000545042 PKD1L3Q7Z443 1732 aa17.92■□□□□ 0.46
DDX55-213ENST00000545042 CYP27B1O15528 508 aa17.92■□□□□ 0.46
DDX55-213ENST00000545042 IL13P35225 146 aa17.92■□□□□ 0.46
DDX55-213ENST00000545042 BTAF1O14981 1849 aa17.92■□□□□ 0.46
DDX55-213ENST00000545042 DOT1LQ8TEK3 1739 aa17.92■□□□□ 0.46
DDX55-213ENST00000545042 PROM2Q8N271 834 aa17.91■□□□□ 0.46
DDX55-213ENST00000545042 DIAPH1O60610 1272 aaKnown RBP17.9■□□□□ 0.46
DDX55-213ENST00000545042 PLEKHO1Q53GL0 409 aaPredicted RBP17.9■□□□□ 0.46
DDX55-213ENST00000545042 IFNL2Q8IZJ0 200 aa17.9■□□□□ 0.46
DDX55-213ENST00000545042 AMOTQ4VCS5 1084 aa17.89■□□□□ 0.45
DDX55-213ENST00000545042 SULT6B1Q6IMI4 303 aa17.89■□□□□ 0.45
DDX55-213ENST00000545042 NKX1-1Q15270 411 aaPredicted RBP17.88■□□□□ 0.45
DDX55-213ENST00000545042 CFAP53Q96M91 514 aa17.88■□□□□ 0.45
DDX55-213ENST00000545042 STK32BQ9NY57 414 aa17.88■□□□□ 0.45
DDX55-213ENST00000545042 PHKG2P15735 406 aa17.87■□□□□ 0.45
DDX55-213ENST00000545042 SLC27A3Q5K4L6 730 aa17.87■□□□□ 0.45
DDX55-213ENST00000545042 AEBP1Q8IUX7 1158 aa17.87■□□□□ 0.45
DDX55-213ENST00000545042 SRCAPQ6ZRS2 3230 aa17.87■□□□□ 0.45
DDX55-213ENST00000545042 HSP90AB1P08238 724 aaKnown RBP17.86■□□□□ 0.45
DDX55-213ENST00000545042 MPRIPQ6WCQ1 1025 aa17.86■□□□□ 0.45
DDX55-213ENST00000545042 KDRP35968 1356 aa17.86■□□□□ 0.45
DDX55-213ENST00000545042 ZNF530Q6P9A1 599 aaPredicted RBP17.85■□□□□ 0.45
DDX55-213ENST00000545042 C1orf141Q5JVX7 400 aa17.84■□□□□ 0.45
DDX55-213ENST00000545042 ANO8Q9HCE9 1232 aaPredicted RBP17.84■□□□□ 0.45
DDX55-213ENST00000545042 U2SURPO15042 1029 aaKnown RBP17.83■□□□□ 0.44
DDX55-213ENST00000545042 HMOX1P09601 288 aa17.83■□□□□ 0.44
DDX55-213ENST00000545042 HMGB2P26583 209 aaKnown RBP17.83■□□□□ 0.44
DDX55-213ENST00000545042 PPP2R1AP30153 589 aa17.83■□□□□ 0.44
DDX55-213ENST00000545042 SLC15A2Q16348 729 aa17.83■□□□□ 0.44
DDX55-213ENST00000545042 SMARCC1Q92922 1105 aaPredicted RBP17.83■□□□□ 0.44
DDX55-213ENST00000545042 TMOD3Q9NYL9 352 aa17.83■□□□□ 0.44
DDX55-213ENST00000545042 DCAF5Q96JK2 942 aa17.82■□□□□ 0.44
DDX55-213ENST00000545042 CCNL1Q9UK58 526 aaPredicted RBP17.82■□□□□ 0.44
DDX55-213ENST00000545042 LRRC4BQ9NT99 713 aa17.81■□□□□ 0.44
DDX55-213ENST00000545042 NUDCQ9Y266 331 aa17.81■□□□□ 0.44
DDX55-213ENST00000545042 COL3A1P02461 1466 aaPredicted RBP17.81■□□□□ 0.44
DDX55-213ENST00000545042 TOGARAM1Q9Y4F4 1720 aa17.81■□□□□ 0.44
DDX55-213ENST00000545042 ERVV-2B6SEH9 535 aa17.8■□□□□ 0.44
DDX55-213ENST00000545042 DDX10Q13206 875 aaKnown RBP17.8■□□□□ 0.44
DDX55-213ENST00000545042 PIGBQ92521 554 aa17.8■□□□□ 0.44
DDX55-213ENST00000545042 LRP5O75197 1615 aa17.8■□□□□ 0.44
DDX55-213ENST00000545042 PALLDQ8WX93 1383 aa17.79■□□□□ 0.44
DDX55-213ENST00000545042 ITGB4P16144 1822 aa17.79■□□□□ 0.44
DDX55-213ENST00000545042 LY75O60449 1722 aa17.78■□□□□ 0.44
DDX55-213ENST00000545042 PAPPAQ13219 1627 aa17.77■□□□□ 0.44
DDX55-213ENST00000545042 KCNQ4P56696 695 aa17.77■□□□□ 0.44
DDX55-213ENST00000545042 CABP4P57796 275 aa17.77■□□□□ 0.44
DDX55-213ENST00000545042 AKAP4Q5JQC9 854 aa17.77■□□□□ 0.44
DDX55-213ENST00000545042 SPON1Q9HCB6 807 aa17.77■□□□□ 0.44
DDX55-213ENST00000545042 RALBP1Q15311 655 aa17.75■□□□□ 0.43
DDX55-213ENST00000545042 ZNF827Q17R98 1081 aa17.75■□□□□ 0.43
DDX55-213ENST00000545042 AKT1S1Q96B36 256 aa17.75■□□□□ 0.43
DDX55-213ENST00000545042 TFCP2L1Q9NZI6 479 aa17.75■□□□□ 0.43
DDX55-213ENST00000545042 KDM6AO15550 1401 aaPredicted RBP17.74■□□□□ 0.43
DDX55-213ENST00000545042 ASAP1Q9ULH1 1129 aa17.74■□□□□ 0.43
DDX55-213ENST00000545042 U2AF1L5P0DN76 240 aaPredicted RBP17.73■□□□□ 0.43
DDX55-213ENST00000545042 U2AF1Q01081 240 aaKnown RBP eCLIP17.73■□□□□ 0.43
DDX55-213ENST00000545042 MTHFSDQ2M296 383 aaKnown RBP17.73■□□□□ 0.43
DDX55-213ENST00000545042 GAS2L2Q8NHY3 880 aa17.73■□□□□ 0.43
DDX55-213ENST00000545042 CASZ1Q86V15 1759 aa17.72■□□□□ 0.43
DDX55-213ENST00000545042 LOC102724428A0A0B4J2F2 783 aa17.72■□□□□ 0.43
DDX55-213ENST00000545042 ZBTB7AO95365 584 aa17.72■□□□□ 0.43
DDX55-213ENST00000545042 SIK1P57059 783 aa17.72■□□□□ 0.43
DDX55-213ENST00000545042 PDGFDQ9GZP0 370 aaPredicted RBP17.72■□□□□ 0.43
DDX55-213ENST00000545042 ATG3Q9NT62 314 aa17.72■□□□□ 0.43
DDX55-213ENST00000545042 PPP1R1BQ9UD71 204 aaPredicted RBP17.72■□□□□ 0.43
DDX55-213ENST00000545042 MTFR1LQ9H019 292 aa17.71■□□□□ 0.43
DDX55-213ENST00000545042 PRKAR2BP31323 418 aa17.7■□□□□ 0.42
DDX55-213ENST00000545042 NFATC2IPQ8NCF5 419 aa17.7■□□□□ 0.42
DDX55-213ENST00000545042 RSPH6AQ9H0K4 717 aa17.7■□□□□ 0.42
DDX55-213ENST00000545042 C5P01031 1676 aa17.7■□□□□ 0.42
DDX55-213ENST00000545042 RNMTO43148 476 aaKnown RBP17.69■□□□□ 0.42
DDX55-213ENST00000545042 FCHSD2O94868 740 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms