RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 XPCQ01831 940 aaPredicted RBP18.1■□□□□ 0.49
CHD4-210ENST00000544040 MROH2BQ7Z745 1585 aa18.1■□□□□ 0.49
CHD4-210ENST00000544040 RBM25P49756 843 aaKnown RBP18.1■□□□□ 0.49
CHD4-210ENST00000544040 RNF187Q5TA31 235 aaPredicted RBP18.1■□□□□ 0.49
CHD4-210ENST00000544040 NUTM1Q86Y26 1132 aa18.1■□□□□ 0.49
CHD4-210ENST00000544040 URI1O94763 535 aaPredicted RBP18.1■□□□□ 0.49
CHD4-210ENST00000544040 KLHL10Q6JEL2 608 aa18.1■□□□□ 0.49
CHD4-210ENST00000544040 ZSCAN30Q86W11 494 aa18.1■□□□□ 0.49
CHD4-210ENST00000544040 UBAC1Q9BSL1 405 aa18.1■□□□□ 0.49
CHD4-210ENST00000544040 ZNF644Q9H582 1327 aaPredicted RBP18.1■□□□□ 0.49
CHD4-210ENST00000544040 CDKL5O76039 1030 aa18.09■□□□□ 0.49
CHD4-210ENST00000544040 RAI14Q9P0K7 980 aa18.09■□□□□ 0.49
CHD4-210ENST00000544040 MVPQ14764 893 aaKnown RBP18.09■□□□□ 0.49
CHD4-210ENST00000544040 PHF23Q9BUL5 403 aaPredicted RBP18.09■□□□□ 0.49
CHD4-210ENST00000544040 CCDC178Q5BJE1 867 aa18.09■□□□□ 0.49
CHD4-210ENST00000544040 CCDC83Q8IWF9 413 aa18.09■□□□□ 0.49
CHD4-210ENST00000544040 ZNF397Q8NF99 534 aaPredicted RBP18.09■□□□□ 0.49
CHD4-210ENST00000544040 SRCIN1Q9C0H9 1055 aa18.09■□□□□ 0.49
CHD4-210ENST00000544040 NF2P35240 595 aa18.09■□□□□ 0.49
CHD4-210ENST00000544040 SULT6B1Q6IMI4 303 aa18.08■□□□□ 0.49
CHD4-210ENST00000544040 ESCO1Q5FWF5 840 aa18.08■□□□□ 0.49
CHD4-210ENST00000544040 CCDC91Q7Z6B0 441 aa18.08■□□□□ 0.49
CHD4-210ENST00000544040 CCDC85AQ96PX6 553 aaPredicted RBP18.08■□□□□ 0.49
CHD4-210ENST00000544040 SRGAP3O43295 1099 aa18.08■□□□□ 0.48
CHD4-210ENST00000544040 GPATCH11Q8N954 259 aa18.08■□□□□ 0.48
CHD4-210ENST00000544040 PPP6R1Q9UPN7 881 aa18.08■□□□□ 0.48
CHD4-210ENST00000544040 ZFP91Q96JP5 570 aaPredicted RBP18.08■□□□□ 0.48
CHD4-210ENST00000544040 TRMT1Q9NXH9 659 aaKnown RBP18.08■□□□□ 0.48
CHD4-210ENST00000544040 ZSCAN31Q96LW9 406 aaPredicted RBP18.07■□□□□ 0.48
CHD4-210ENST00000544040 UBE4AQ14139 1066 aa18.07■□□□□ 0.48
CHD4-210ENST00000544040 SPA17Q15506 151 aa18.07■□□□□ 0.48
CHD4-210ENST00000544040 DDX54Q8TDD1 881 aaKnown RBP18.07■□□□□ 0.48
CHD4-210ENST00000544040 MPHOSPH10O00566 681 aaKnown RBP18.07■□□□□ 0.48
CHD4-210ENST00000544040 CABP4P57796 275 aa18.07■□□□□ 0.48
CHD4-210ENST00000544040 ATF7IPQ6VMQ6 1270 aa18.06■□□□□ 0.48
CHD4-210ENST00000544040 MPHOSPH8Q99549 860 aa18.06■□□□□ 0.48
CHD4-210ENST00000544040 SFPQP23246 707 aaKnown RBP eCLIP18.06■□□□□ 0.48
CHD4-210ENST00000544040 ZSCAN29Q8IWY8 852 aaPredicted RBP18.06■□□□□ 0.48
CHD4-210ENST00000544040 KIF4BQ2VIQ3 1234 aa18.06■□□□□ 0.48
CHD4-210ENST00000544040 CGNQ9P2M7 1197 aaKnown RBP18.06■□□□□ 0.48
CHD4-210ENST00000544040 IFFO1Q0D2I5 559 aa18.06■□□□□ 0.48
CHD4-210ENST00000544040 ZSCAN25Q6NSZ9 544 aa18.05■□□□□ 0.48
CHD4-210ENST00000544040 IPO4Q8TEX9 1081 aaKnown RBP18.05■□□□□ 0.48
CHD4-210ENST00000544040 KIF5CO60282 957 aa18.05■□□□□ 0.48
CHD4-210ENST00000544040 CFAP70Q5T0N1 1121 aa18.05■□□□□ 0.48
CHD4-210ENST00000544040 CPLX3Q8WVH0 158 aa18.05■□□□□ 0.48
CHD4-210ENST00000544040 TNNT1P13805 278 aa18.04■□□□□ 0.48
CHD4-210ENST00000544040 GBP3Q9H0R5 595 aa18.04■□□□□ 0.48
CHD4-210ENST00000544040 GUCY1B3Q02153 619 aa18.04■□□□□ 0.48
CHD4-210ENST00000544040 CLIP2Q9UDT6 1046 aa18.04■□□□□ 0.48
CHD4-210ENST00000544040 GTF2F1P35269 517 aaKnown RBP eCLIP18.04■□□□□ 0.482e-6■□□□□ 10.8
CHD4-210ENST00000544040 SKAP1Q86WV1 359 aa18.04■□□□□ 0.48
CHD4-210ENST00000544040 LUZP1Q86V48 1076 aa18.04■□□□□ 0.48
CHD4-210ENST00000544040 CTNNBL1Q8WYA6 563 aaPredicted RBP18.04■□□□□ 0.48
CHD4-210ENST00000544040 SMARCA5O60264 1052 aaPredicted RBP18.03■□□□□ 0.48
CHD4-210ENST00000544040 IDH1O75874 414 aaKnown RBP18.03■□□□□ 0.48
CHD4-210ENST00000544040 DESP17661 470 aa18.03■□□□□ 0.48
CHD4-210ENST00000544040 SMG6Q86US8 1419 aaKnown RBP18.03■□□□□ 0.48
CHD4-210ENST00000544040 SPDYE4A6NLX3 237 aa18.03■□□□□ 0.48
CHD4-210ENST00000544040 ZSCAN12O43309 604 aa18.03■□□□□ 0.48
CHD4-210ENST00000544040 KIF18AQ8NI77 898 aa18.03■□□□□ 0.48
CHD4-210ENST00000544040 ANAPC15P60006 121 aa18.03■□□□□ 0.48
CHD4-210ENST00000544040 ZHX1Q9UKY1 873 aaPredicted RBP18.02■□□□□ 0.48
CHD4-210ENST00000544040 TATP17735 454 aaPredicted RBP18.02■□□□□ 0.48
CHD4-210ENST00000544040 C16orf45Q96MC5 204 aaPredicted RBP18.02■□□□□ 0.48
CHD4-210ENST00000544040 UBA5Q9GZZ9 404 aa18.02■□□□□ 0.48
CHD4-210ENST00000544040 RUSC2Q8N2Y8 1516 aa18.02■□□□□ 0.48
CHD4-210ENST00000544040 GSTTP1A0A1W2PQM5 241 aa18.02■□□□□ 0.48
CHD4-210ENST00000544040 CEP63Q96MT8 703 aa18.02■□□□□ 0.48
CHD4-210ENST00000544040 CIZ1Q9ULV3 898 aaPredicted RBP18.02■□□□□ 0.48
CHD4-210ENST00000544040 TOP1P11387 765 aaKnown RBP18.02■□□□□ 0.47
CHD4-210ENST00000544040 PRPF40BQ6NWY9 871 aaKnown RBP18.02■□□□□ 0.47
CHD4-210ENST00000544040 LRP2BPQ9P2M1 347 aa18.02■□□□□ 0.47
CHD4-210ENST00000544040 CACNA2D4Q7Z3S7 1137 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 CEP131Q9UPN4 1083 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 GPRASP1Q5JY77 1395 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 PRKCSHP14314 528 aaPredicted RBP18.01■□□□□ 0.47
CHD4-210ENST00000544040 MAP9Q49MG5 647 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 PRAM1Q96QH2 718 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 CTNNA3Q9UI47 895 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 C11orf95C9JLR9 678 aaPredicted RBP18.01■□□□□ 0.47
CHD4-210ENST00000544040 CYB5RLQ6IPT4 315 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 CKAP2LQ8IYA6 745 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 WASF1Q92558 559 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 PTPRGP23470 1445 aa18.01■□□□□ 0.47
CHD4-210ENST00000544040 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.01■□□□□ 0.47
CHD4-210ENST00000544040 MACROD2A1Z1Q3 448 aa18■□□□□ 0.47
CHD4-210ENST00000544040 IMMTQ16891 758 aaKnown RBP18■□□□□ 0.47
CHD4-210ENST00000544040 EXOC6BQ9Y2D4 811 aa18■□□□□ 0.47
CHD4-210ENST00000544040 CCDC183Q5T5S1 534 aa18■□□□□ 0.47
CHD4-210ENST00000544040 LARP6Q9BRS8 491 aaKnown RBP18■□□□□ 0.47
CHD4-210ENST00000544040 NUP88Q99567 741 aaPredicted RBP18■□□□□ 0.47
CHD4-210ENST00000544040 SLC12A5Q9H2X9 1139 aa18■□□□□ 0.47
CHD4-210ENST00000544040 USP25Q9UHP3 1055 aa18■□□□□ 0.47
CHD4-210ENST00000544040 ZNF530Q6P9A1 599 aaPredicted RBP18■□□□□ 0.47
CHD4-210ENST00000544040 PPP4R3BQ5MIZ7 849 aa17.99■□□□□ 0.47
CHD4-210ENST00000544040 FKBP15Q5T1M5 1219 aa17.99■□□□□ 0.47
CHD4-210ENST00000544040 BICDL1Q6ZP65 573 aa17.99■□□□□ 0.47
CHD4-210ENST00000544040 CHMP4BP1P59074 171 aa17.99■□□□□ 0.47
CHD4-210ENST00000544040 KRT32Q14532 448 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms