RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 AMOTQ4VCS5 1084 aa16.23■□□□□ 0.19
DDX55-210ENST00000543016 USHBP1Q8N6Y0 703 aa16.23■□□□□ 0.19
DDX55-210ENST00000543016 MRS2Q9HD23 443 aa16.23■□□□□ 0.19
DDX55-210ENST00000543016 A0A0G2JS52 829 aa16.22■□□□□ 0.19
DDX55-210ENST00000543016 MYT1Q01538 1121 aa16.22■□□□□ 0.19
DDX55-210ENST00000543016 OVOS2A0A0G2JMS6 1433 aa16.21■□□□□ 0.19
DDX55-210ENST00000543016 NEFMP07197 916 aa16.21■□□□□ 0.19
DDX55-210ENST00000543016 PDE3BQ13370 1112 aa16.21■□□□□ 0.19
DDX55-210ENST00000543016 PLEKHO1Q53GL0 409 aaPredicted RBP16.21■□□□□ 0.19
DDX55-210ENST00000543016 ZCRB1Q8TBF4 217 aaKnown RBP16.21■□□□□ 0.19
DDX55-210ENST00000543016 SPG7Q9UQ90 795 aa16.21■□□□□ 0.19
DDX55-210ENST00000543016 THSD7AQ9UPZ6 1657 aa16.21■□□□□ 0.18
DDX55-210ENST00000543016 AEBP1Q8IUX7 1158 aa16.2■□□□□ 0.18
DDX55-210ENST00000543016 RGPD2P0DJD1 1756 aa16.19■□□□□ 0.18
DDX55-210ENST00000543016 HMOX1P09601 288 aa16.19■□□□□ 0.18
DDX55-210ENST00000543016 PNISRQ8TF01 805 aaKnown RBP16.19■□□□□ 0.18
DDX55-210ENST00000543016 RSPH6AQ9H0K4 717 aa16.19■□□□□ 0.18
DDX55-210ENST00000543016 PARP4Q9UKK3 1724 aaKnown RBP16.19■□□□□ 0.18
DDX55-210ENST00000543016 MEGF6O75095 1541 aa16.19■□□□□ 0.18
DDX55-210ENST00000543016 RGS12O14924 1447 aa16.19■□□□□ 0.18
DDX55-210ENST00000543016 TNS2Q63HR2 1409 aa16.19■□□□□ 0.18
DDX55-210ENST00000543016 KRT27Q7Z3Y8 459 aa16.18■□□□□ 0.18
DDX55-210ENST00000543016 PCDH11XQ9BZA7 1347 aa16.18■□□□□ 0.18
DDX55-210ENST00000543016 PCDH11YQ9BZA8 1340 aa16.18■□□□□ 0.18
DDX55-210ENST00000543016 PRKAR2BP31323 418 aa16.17■□□□□ 0.18
DDX55-210ENST00000543016 WNK3Q9BYP7 1800 aa16.17■□□□□ 0.18
DDX55-210ENST00000543016 MIER1Q8N108 512 aa16.16■□□□□ 0.18
DDX55-210ENST00000543016 GAS2L2Q8NHY3 880 aa16.16■□□□□ 0.18
DDX55-210ENST00000543016 BCL9O00512 1426 aa16.15■□□□□ 0.18
DDX55-210ENST00000543016 HSP90AB1P08238 724 aaKnown RBP16.15■□□□□ 0.18
DDX55-210ENST00000543016 CCDC184Q52MB2 194 aa16.15■□□□□ 0.18
DDX55-210ENST00000543016 IFNL2Q8IZJ0 200 aa16.15■□□□□ 0.18
DDX55-210ENST00000543016 RNF216Q9NWF9 866 aaPredicted RBP16.15■□□□□ 0.18
DDX55-210ENST00000543016 ADAMTS8Q9UP79 889 aa16.15■□□□□ 0.18
DDX55-210ENST00000543016 NCBP3Q53F19 620 aaKnown RBP16.14■□□□□ 0.17
DDX55-210ENST00000543016 FAM196AQ6ZSG2 479 aa16.14■□□□□ 0.17
DDX55-210ENST00000543016 MAPK8IP3Q9UPT6 1336 aa16.14■□□□□ 0.17
DDX55-210ENST00000543016 LRRC37A3O60309 1634 aa16.13■□□□□ 0.17
DDX55-210ENST00000543016 NKX1-1Q15270 411 aaPredicted RBP16.13■□□□□ 0.17
DDX55-210ENST00000543016 C1orf141Q5JVX7 400 aa16.13■□□□□ 0.17
DDX55-210ENST00000543016 MARCH10Q8NA82 808 aaPredicted RBP16.13■□□□□ 0.17
DDX55-210ENST00000543016 DDX54Q8TDD1 881 aaKnown RBP16.13■□□□□ 0.17
DDX55-210ENST00000543016 RUNDC1Q96C34 613 aa16.13■□□□□ 0.17
DDX55-210ENST00000543016 PLEKHF1Q96S99 279 aa16.13■□□□□ 0.17
DDX55-210ENST00000543016 AKAP4Q5JQC9 854 aa16.12■□□□□ 0.17
DDX55-210ENST00000543016 ZNF530Q6P9A1 599 aaPredicted RBP16.12■□□□□ 0.17
DDX55-210ENST00000543016 PKD1L3Q7Z443 1732 aa16.11■□□□□ 0.17
DDX55-210ENST00000543016 CYP27B1O15528 508 aa16.11■□□□□ 0.17
DDX55-210ENST00000543016 PHKG2P15735 406 aa16.11■□□□□ 0.17
DDX55-210ENST00000543016 HTATSF1O43719 755 aaKnown RBP16.1■□□□□ 0.17
DDX55-210ENST00000543016 MTHFSDQ2M296 383 aaKnown RBP16.1■□□□□ 0.17
DDX55-210ENST00000543016 PHACTR3Q96KR7 559 aa16.1■□□□□ 0.17
DDX55-210ENST00000543016 DCAF5Q96JK2 942 aa16.09■□□□□ 0.17
DDX55-210ENST00000543016 GNAT3A8MTJ3 354 aa16.08■□□□□ 0.16
DDX55-210ENST00000543016 NFE2L2Q16236 605 aa16.08■□□□□ 0.16
DDX55-210ENST00000543016 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
DDX55-210ENST00000543016 LMOD3Q0VAK6 560 aa16.07■□□□□ 0.16
DDX55-210ENST00000543016 FAM9BQ8IZU0 186 aa16.07■□□□□ 0.16
DDX55-210ENST00000543016 BRWD3Q6RI45 1802 aa16.07■□□□□ 0.16
DDX55-210ENST00000543016 MAP3K5Q99683 1374 aa16.06■□□□□ 0.16
DDX55-210ENST00000543016 ERVV-2B6SEH9 535 aa16.06■□□□□ 0.16
DDX55-210ENST00000543016 CCDC125Q86Z20 511 aa16.06■□□□□ 0.16
DDX55-210ENST00000543016 RTF1Q92541 710 aaKnown RBP16.06■□□□□ 0.16
DDX55-210ENST00000543016 TMPOP42166 694 aaKnown RBP16.05■□□□□ 0.16
DDX55-210ENST00000543016 CCDC146Q8IYE0 955 aa16.04■□□□□ 0.16
DDX55-210ENST00000543016 BCL11BQ9C0K0 894 aaPredicted RBP16.04■□□□□ 0.16
DDX55-210ENST00000543016 SHANK3Q9BYB0 1731 aa16.04■□□□□ 0.16
DDX55-210ENST00000543016 RIPK4P57078 832 aa16.03■□□□□ 0.16
DDX55-210ENST00000543016 ILDR2Q71H61 639 aa16.03■□□□□ 0.16
DDX55-210ENST00000543016 APAF1O14727 1248 aa16.02■□□□□ 0.16
DDX55-210ENST00000543016 RNMTO43148 476 aaKnown RBP16.02■□□□□ 0.16
DDX55-210ENST00000543016 NPM3O75607 178 aaKnown RBP16.02■□□□□ 0.16
DDX55-210ENST00000543016 FAM182BQ5T319 152 aa16.02■□□□□ 0.16
DDX55-210ENST00000543016 MPRIPQ6WCQ1 1025 aa16.02■□□□□ 0.16
DDX55-210ENST00000543016 KCNA4P22459 653 aa16.01■□□□□ 0.15
DDX55-210ENST00000543016 CABP4P57796 275 aa16.01■□□□□ 0.15
DDX55-210ENST00000543016 CEMIPQ8WUJ3 1361 aa16■□□□□ 0.15
DDX55-210ENST00000543016 PRIM1P49642 420 aaKnown RBP16■□□□□ 0.15
DDX55-210ENST00000543016 SF3B2Q13435 895 aaKnown RBP16■□□□□ 0.15
DDX55-210ENST00000543016 CCDC27Q2M243 656 aa16■□□□□ 0.15
DDX55-210ENST00000543016 IL17REQ8NFR9 667 aa16■□□□□ 0.15
DDX55-210ENST00000543016 TMOD3Q9NYL9 352 aa16■□□□□ 0.15
DDX55-210ENST00000543016 KDM6AO15550 1401 aaPredicted RBP16■□□□□ 0.15
DDX55-210ENST00000543016 HMGB2P26583 209 aaKnown RBP15.99■□□□□ 0.15
DDX55-210ENST00000543016 CALD1Q05682 793 aaKnown RBP15.99■□□□□ 0.15
DDX55-210ENST00000543016 TEFQ10587 303 aa15.99■□□□□ 0.15
DDX55-210ENST00000543016 SLC52A2Q9HAB3 445 aa15.99■□□□□ 0.15
DDX55-210ENST00000543016 TRIM37O94972 964 aa15.98■□□□□ 0.15
DDX55-210ENST00000543016 SMARCC1Q92922 1105 aaPredicted RBP15.98■□□□□ 0.15
DDX55-210ENST00000543016 SYTL4Q96C24 671 aaPredicted RBP15.98■□□□□ 0.15
DDX55-210ENST00000543016 ACSBG1Q96GR2 724 aa15.98■□□□□ 0.15
DDX55-210ENST00000543016 LGR6Q9HBX8 967 aa15.98■□□□□ 0.15
DDX55-210ENST00000543016 ADAMTS7Q9UKP4 1686 aa15.98■□□□□ 0.15
DDX55-210ENST00000543016 BABAM1Q9NWV8 329 aa15.97■□□□□ 0.15
DDX55-210ENST00000543016 KAT6BQ8WYB5 2073 aa15.96■□□□□ 0.15
DDX55-210ENST00000543016 NHSQ6T4R5 1651 aa15.96■□□□□ 0.15
DDX55-210ENST00000543016 KCNQ2O43526 872 aa15.96■□□□□ 0.15
DDX55-210ENST00000543016 NEUROD2Q15784 382 aa15.96■□□□□ 0.15
DDX55-210ENST00000543016 NFATC2IPQ8NCF5 419 aa15.96■□□□□ 0.15
DDX55-210ENST00000543016 PIGBQ92521 554 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms