RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 DEFB132Q7Z7B7 95 aa21.31■■□□□ 1
RPAIN-206ENST00000539417 DDX54Q8TDD1 881 aaKnown RBP21.31■■□□□ 1
RPAIN-206ENST00000539417 TATP17735 454 aaPredicted RBP21.3■■□□□ 1
RPAIN-206ENST00000539417 ZCRB1Q8TBF4 217 aaKnown RBP21.3■■□□□ 1
RPAIN-206ENST00000539417 DIAPH1O60610 1272 aaKnown RBP21.28■■□□□ 1
RPAIN-206ENST00000539417 PKD1L3Q7Z443 1732 aa21.28■■□□□ 1
RPAIN-206ENST00000539417 SULT6B1Q6IMI4 303 aa21.27■■□□□ 1
RPAIN-206ENST00000539417 KCNQ2O43526 872 aa21.26■□□□□ 0.99
RPAIN-206ENST00000539417 ACSBG1Q96GR2 724 aa21.26■□□□□ 0.99
RPAIN-206ENST00000539417 BCL9O00512 1426 aa21.26■□□□□ 0.99
RPAIN-206ENST00000539417 CYP27B1O15528 508 aa21.26■□□□□ 0.99
RPAIN-206ENST00000539417 CCDC125Q86Z20 511 aa21.26■□□□□ 0.99
RPAIN-206ENST00000539417 HMOX1P09601 288 aa21.25■□□□□ 0.99
RPAIN-206ENST00000539417 KDRP35968 1356 aa21.24■□□□□ 0.99
RPAIN-206ENST00000539417 EN1Q05925 392 aaPredicted RBP21.22■□□□□ 0.99
RPAIN-206ENST00000539417 U2SURPO15042 1029 aaKnown RBP21.21■□□□□ 0.99
RPAIN-206ENST00000539417 APBA3O96018 575 aa21.21■□□□□ 0.99
RPAIN-206ENST00000539417 RALBP1Q15311 655 aa21.21■□□□□ 0.99
RPAIN-206ENST00000539417 DOT1LQ8TEK3 1739 aa21.21■□□□□ 0.99
RPAIN-206ENST00000539417 NHSQ6T4R5 1651 aa21.21■□□□□ 0.99
RPAIN-206ENST00000539417 SF3B2Q13435 895 aaKnown RBP21.2■□□□□ 0.98
RPAIN-206ENST00000539417 PCDH11XQ9BZA7 1347 aa21.2■□□□□ 0.98
RPAIN-206ENST00000539417 PCDH11YQ9BZA8 1340 aa21.2■□□□□ 0.98
RPAIN-206ENST00000539417 CFAP53Q96M91 514 aa21.2■□□□□ 0.98
RPAIN-206ENST00000539417 PRKRIP1Q9H875 184 aaPredicted RBP21.2■□□□□ 0.98
RPAIN-206ENST00000539417 TOGARAM1Q9Y4F4 1720 aa21.19■□□□□ 0.98
RPAIN-206ENST00000539417 BCL11BQ9C0K0 894 aaPredicted RBP21.19■□□□□ 0.98
RPAIN-206ENST00000539417 SPG7Q9UQ90 795 aa21.19■□□□□ 0.98
RPAIN-206ENST00000539417 EZH2Q15910 746 aaKnown RBP21.18■□□□□ 0.98
RPAIN-206ENST00000539417 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.18■□□□□ 0.982e-8■□□□□ 9.4
RPAIN-206ENST00000539417 BAG6P46379 1132 aa21.17■□□□□ 0.98
RPAIN-206ENST00000539417 CAMKK2Q96RR4 588 aa21.17■□□□□ 0.98
RPAIN-206ENST00000539417 PHKG2P15735 406 aa21.16■□□□□ 0.98
RPAIN-206ENST00000539417 PRIM1P49642 420 aaKnown RBP21.16■□□□□ 0.98
RPAIN-206ENST00000539417 MYBBP1AQ9BQG0 1328 aaKnown RBP21.16■□□□□ 0.98
RPAIN-206ENST00000539417 BTAF1O14981 1849 aa21.15■□□□□ 0.98
RPAIN-206ENST00000539417 KAT6BQ8WYB5 2073 aa21.15■□□□□ 0.98
RPAIN-206ENST00000539417 PLEKHO1Q53GL0 409 aaPredicted RBP21.14■□□□□ 0.98
RPAIN-206ENST00000539417 NKX1-1Q15270 411 aaPredicted RBP21.13■□□□□ 0.97
RPAIN-206ENST00000539417 ZNF530Q6P9A1 599 aaPredicted RBP21.13■□□□□ 0.97
RPAIN-206ENST00000539417 SYTL4Q96C24 671 aaPredicted RBP21.13■□□□□ 0.97
RPAIN-206ENST00000539417 U2AF1L5P0DN76 240 aaPredicted RBP21.13■□□□□ 0.97
RPAIN-206ENST00000539417 U2AF1Q01081 240 aaKnown RBP eCLIP21.13■□□□□ 0.97
RPAIN-206ENST00000539417 IFNL2Q8IZJ0 200 aa21.13■□□□□ 0.97
RPAIN-206ENST00000539417 RSPH6AQ9H0K4 717 aa21.13■□□□□ 0.97
RPAIN-206ENST00000539417 MTHFSDQ2M296 383 aaKnown RBP21.12■□□□□ 0.97
RPAIN-206ENST00000539417 PROM2Q8N271 834 aa21.12■□□□□ 0.97
RPAIN-206ENST00000539417 PLEKHG2Q9H7P9 1386 aa21.11■□□□□ 0.97
RPAIN-206ENST00000539417 ITGB4P16144 1822 aa21.11■□□□□ 0.97
RPAIN-206ENST00000539417 AMOTQ4VCS5 1084 aa21.11■□□□□ 0.97
RPAIN-206ENST00000539417 PHACTR3Q96KR7 559 aa21.11■□□□□ 0.97
RPAIN-206ENST00000539417 NUDCQ9Y266 331 aa21.11■□□□□ 0.97
RPAIN-206ENST00000539417 RREB1Q92766 1687 aa21.11■□□□□ 0.97
RPAIN-206ENST00000539417 KDM6AO15550 1401 aaPredicted RBP21.11■□□□□ 0.97
RPAIN-206ENST00000539417 PRKAR2BP31323 418 aa21.1■□□□□ 0.97
RPAIN-206ENST00000539417 PLSCR1O15162 318 aa21.09■□□□□ 0.97
RPAIN-206ENST00000539417 NUP188Q5SRE5 1749 aa21.08■□□□□ 0.97
RPAIN-206ENST00000539417 CCDC184Q52MB2 194 aa21.08■□□□□ 0.97
RPAIN-206ENST00000539417 MPRIPQ6WCQ1 1025 aa21.07■□□□□ 0.96
RPAIN-206ENST00000539417 RGPD3A6NKT7 1758 aaPredicted RBP21.07■□□□□ 0.96
RPAIN-206ENST00000539417 RGPD4Q7Z3J3 1758 aa21.07■□□□□ 0.96
RPAIN-206ENST00000539417 PIGBQ92521 554 aa21.06■□□□□ 0.96
RPAIN-206ENST00000539417 TXNRD1Q16881 649 aa21.05■□□□□ 0.96
RPAIN-206ENST00000539417 C1orf141Q5JVX7 400 aa21.05■□□□□ 0.96
RPAIN-206ENST00000539417 LGR6Q9HBX8 967 aa21.05■□□□□ 0.96
RPAIN-206ENST00000539417 FCHSD2O94868 740 aa21.04■□□□□ 0.96
RPAIN-206ENST00000539417 KCNQ4P56696 695 aa21.04■□□□□ 0.96
RPAIN-206ENST00000539417 AKAP4Q5JQC9 854 aa21.04■□□□□ 0.96
RPAIN-206ENST00000539417 DCAF5Q96JK2 942 aa21.03■□□□□ 0.96
RPAIN-206ENST00000539417 SCN11AQ9UI33 1791 aa21.02■□□□□ 0.96
RPAIN-206ENST00000539417 PLEKHF1Q96S99 279 aa21.02■□□□□ 0.96
RPAIN-206ENST00000539417 LRRC4BQ9NT99 713 aa21.02■□□□□ 0.96
RPAIN-206ENST00000539417 VIRMAQ69YN4 1812 aaKnown RBP21.02■□□□□ 0.96
RPAIN-206ENST00000539417 LY75O60449 1722 aa21.01■□□□□ 0.95
RPAIN-206ENST00000539417 ADAMTS7Q9UKP4 1686 aa21.01■□□□□ 0.95
RPAIN-206ENST00000539417 HSP90AB1P08238 724 aaKnown RBP21.01■□□□□ 0.95
RPAIN-206ENST00000539417 ASAP1Q9ULH1 1129 aa21.01■□□□□ 0.95
RPAIN-206ENST00000539417 ANP32CO43423 234 aa21■□□□□ 0.95
RPAIN-206ENST00000539417 ANO8Q9HCE9 1232 aaPredicted RBP21■□□□□ 0.95
RPAIN-206ENST00000539417 TMOD3Q9NYL9 352 aa21■□□□□ 0.95
RPAIN-206ENST00000539417 PSDA5PKW4 1024 aaPredicted RBP20.99■□□□□ 0.95
RPAIN-206ENST00000539417 ERVV-2B6SEH9 535 aa20.99■□□□□ 0.95
RPAIN-206ENST00000539417 RNMTO43148 476 aaKnown RBP20.99■□□□□ 0.95
RPAIN-206ENST00000539417 NFATC2IPQ8NCF5 419 aa20.98■□□□□ 0.95
RPAIN-206ENST00000539417 IL17REQ8NFR9 667 aa20.98■□□□□ 0.95
RPAIN-206ENST00000539417 GAS2L2Q8NHY3 880 aa20.98■□□□□ 0.95
RPAIN-206ENST00000539417 ATG3Q9NT62 314 aa20.98■□□□□ 0.95
RPAIN-206ENST00000539417 MAP3K5Q99683 1374 aa20.98■□□□□ 0.95
RPAIN-206ENST00000539417 PAPPAQ13219 1627 aa20.97■□□□□ 0.95
RPAIN-206ENST00000539417 ADAMTS8Q9UP79 889 aa20.97■□□□□ 0.95
RPAIN-206ENST00000539417 PALLDQ8WX93 1383 aa20.97■□□□□ 0.95
RPAIN-206ENST00000539417 CABP4P57796 275 aa20.96■□□□□ 0.95
RPAIN-206ENST00000539417 R3HDM1Q15032 1099 aaKnown RBP20.96■□□□□ 0.95
RPAIN-206ENST00000539417 CCDC146Q8IYE0 955 aa20.96■□□□□ 0.95
RPAIN-206ENST00000539417 GNAT3A8MTJ3 354 aa20.95■□□□□ 0.94
RPAIN-206ENST00000539417 MRC1P22897 1456 aa20.95■□□□□ 0.94
RPAIN-206ENST00000539417 DLG5Q8TDM6 1919 aa20.94■□□□□ 0.94
RPAIN-206ENST00000539417 DCTN1Q14203 1278 aa20.94■□□□□ 0.94
RPAIN-206ENST00000539417 SLC52A2Q9HAB3 445 aa20.94■□□□□ 0.94
RPAIN-206ENST00000539417 CCNL1Q9UK58 526 aaPredicted RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms