RNA–Protein interactions for RNA: ENST00000539148.3

CLPB-210, Transcript of ClpB homolog, mitochondrial AAA ATPase chaperonin, humanhuman

TSL 5

Gene CLPB, Length 564 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPB-210ENST00000539148 LMOD3Q0VAK6 560 aa13.48□□□□□ -0.25
CLPB-210ENST00000539148 BARGINQ6ZT62 677 aa13.48□□□□□ -0.25
CLPB-210ENST00000539148 GAS2L2Q8NHY3 880 aa13.48□□□□□ -0.25
CLPB-210ENST00000539148 NCBP3Q53F19 620 aaKnown RBP13.47□□□□□ -0.25
CLPB-210ENST00000539148 RSPH6AQ9H0K4 717 aa13.47□□□□□ -0.25
CLPB-210ENST00000539148 QTRT2Q9H974 415 aaKnown RBP13.47□□□□□ -0.25
CLPB-210ENST00000539148 USP35Q9P2H5 1018 aa13.47□□□□□ -0.25
CLPB-210ENST00000539148 C1orf141Q5JVX7 400 aa13.46□□□□□ -0.25
CLPB-210ENST00000539148 GJD4Q96KN9 370 aaPredicted RBP13.46□□□□□ -0.25
CLPB-210ENST00000539148 ATRNO75882 1429 aa13.46□□□□□ -0.26
CLPB-210ENST00000539148 PKD1L3Q7Z443 1732 aa13.45□□□□□ -0.26
CLPB-210ENST00000539148 EXOC5O00471 708 aa13.45□□□□□ -0.26
CLPB-210ENST00000539148 HSP90AB1P08238 724 aaKnown RBP13.45□□□□□ -0.26
CLPB-210ENST00000539148 RBM6P78332 1123 aaKnown RBP13.45□□□□□ -0.26
CLPB-210ENST00000539148 CALD1Q05682 793 aaKnown RBP13.45□□□□□ -0.26
CLPB-210ENST00000539148 A0A0G2JS52 829 aa13.44□□□□□ -0.26
CLPB-210ENST00000539148 MYT1Q01538 1121 aa13.44□□□□□ -0.26
CLPB-210ENST00000539148 USHBP1Q8N6Y0 703 aa13.44□□□□□ -0.26
CLPB-210ENST00000539148 ZCRB1Q8TBF4 217 aaKnown RBP13.44□□□□□ -0.26
CLPB-210ENST00000539148 RTF1Q92541 710 aaKnown RBP13.44□□□□□ -0.26
CLPB-210ENST00000539148 DLG5Q8TDM6 1919 aa13.44□□□□□ -0.26
CLPB-210ENST00000539148 PCDH11XQ9BZA7 1347 aa13.43□□□□□ -0.26
CLPB-210ENST00000539148 PCDH11YQ9BZA8 1340 aa13.43□□□□□ -0.26
CLPB-210ENST00000539148 OVOS2A0A0G2JMS6 1433 aa13.43□□□□□ -0.26
CLPB-210ENST00000539148 HTATSF1O43719 755 aaKnown RBP13.43□□□□□ -0.26
CLPB-210ENST00000539148 DDB1Q16531 1140 aa13.43□□□□□ -0.26
CLPB-210ENST00000539148 AEBP1Q8IUX7 1158 aa13.43□□□□□ -0.26
CLPB-210ENST00000539148 RXRBP28702 533 aa13.42□□□□□ -0.26
CLPB-210ENST00000539148 NFE2L2Q16236 605 aa13.42□□□□□ -0.26
CLPB-210ENST00000539148 IFNL2Q8IZJ0 200 aa13.42□□□□□ -0.26
CLPB-210ENST00000539148 PLEKHF1Q96S99 279 aa13.42□□□□□ -0.26
CLPB-210ENST00000539148 VIRMAQ69YN4 1812 aaKnown RBP13.41□□□□□ -0.26
CLPB-210ENST00000539148 GNAT3A8MTJ3 354 aa13.41□□□□□ -0.26
CLPB-210ENST00000539148 PDE3BQ13370 1112 aa13.41□□□□□ -0.26
CLPB-210ENST00000539148 AKAP4Q5JQC9 854 aa13.41□□□□□ -0.26
CLPB-210ENST00000539148 ZNF530Q6P9A1 599 aaPredicted RBP13.41□□□□□ -0.26
CLPB-210ENST00000539148 CCDC146Q8IYE0 955 aa13.41□□□□□ -0.26
CLPB-210ENST00000539148 KAT6BQ8WYB5 2073 aa13.41□□□□□ -0.26
CLPB-210ENST00000539148 APAF1O14727 1248 aa13.4□□□□□ -0.26
CLPB-210ENST00000539148 ONECUT3O60422 494 aaPredicted RBP13.4□□□□□ -0.26
CLPB-210ENST00000539148 TMPOP42166 694 aaKnown RBP13.4□□□□□ -0.26
CLPB-210ENST00000539148 RIPK4P57078 832 aa13.4□□□□□ -0.26
CLPB-210ENST00000539148 HNRNPUQ00839 825 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLPB-210ENST00000539148 FAM98CQ17RN3 349 aaKnown RBP13.4□□□□□ -0.26
CLPB-210ENST00000539148 CCDC27Q2M243 656 aa13.4□□□□□ -0.26
CLPB-210ENST00000539148 GTF3C3Q9Y5Q9 886 aa13.4□□□□□ -0.26
CLPB-210ENST00000539148 GLI3P10071 1580 aa13.4□□□□□ -0.26
CLPB-210ENST00000539148 DISP2A7MBM2 1401 aa13.39□□□□□ -0.27
CLPB-210ENST00000539148 TNS2Q63HR2 1409 aa13.39□□□□□ -0.27
CLPB-210ENST00000539148 MEGF6O75095 1541 aa13.39□□□□□ -0.27
CLPB-210ENST00000539148 MAP3K5Q99683 1374 aa13.39□□□□□ -0.27
CLPB-210ENST00000539148 THSD7AQ9UPZ6 1657 aa13.39□□□□□ -0.27
CLPB-210ENST00000539148 MTHFSDQ2M296 383 aaKnown RBP13.38□□□□□ -0.27
CLPB-210ENST00000539148 DCAF5Q96JK2 942 aa13.38□□□□□ -0.27
CLPB-210ENST00000539148 PHACTR3Q96KR7 559 aa13.38□□□□□ -0.27
CLPB-210ENST00000539148 LRRC37A3O60309 1634 aa13.38□□□□□ -0.27
CLPB-210ENST00000539148 SCN11AQ9UI33 1791 aa13.37□□□□□ -0.27
CLPB-210ENST00000539148 NEUROD2Q15784 382 aa13.37□□□□□ -0.27
CLPB-210ENST00000539148 DDX54Q8TDD1 881 aaKnown RBP13.36□□□□□ -0.27
CLPB-210ENST00000539148 PHKG2P15735 406 aa13.35□□□□□ -0.27
CLPB-210ENST00000539148 TEFQ10587 303 aa13.35□□□□□ -0.27
CLPB-210ENST00000539148 WDR63Q8IWG1 891 aa13.35□□□□□ -0.27
CLPB-210ENST00000539148 SEPT12Q8IYM1 358 aa13.35□□□□□ -0.27
CLPB-210ENST00000539148 SHANK3Q9BYB0 1731 aa13.35□□□□□ -0.27
CLPB-210ENST00000539148 ZBED9Q6R2W3 1325 aa13.35□□□□□ -0.27
CLPB-210ENST00000539148 NKX1-1Q15270 411 aaPredicted RBP13.34□□□□□ -0.27
CLPB-210ENST00000539148 PELP1Q8IZL8 1130 aaKnown RBP13.34□□□□□ -0.27
CLPB-210ENST00000539148 SRCAPQ6ZRS2 3230 aa13.33□□□□□ -0.28
CLPB-210ENST00000539148 ERVV-2B6SEH9 535 aa13.33□□□□□ -0.28
CLPB-210ENST00000539148 HMGB2P26583 209 aaKnown RBP13.33□□□□□ -0.28
CLPB-210ENST00000539148 UPF1Q92900 1129 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLPB-210ENST00000539148 CHMP4AQ9BY43 222 aa13.33□□□□□ -0.28
CLPB-210ENST00000539148 BABAM1Q9NWV8 329 aa13.33□□□□□ -0.28
CLPB-210ENST00000539148 RRP7AQ9Y3A4 280 aaKnown RBP13.33□□□□□ -0.28
CLPB-210ENST00000539148 BRWD3Q6RI45 1802 aa13.33□□□□□ -0.28
CLPB-210ENST00000539148 IL16Q14005 1332 aa13.33□□□□□ -0.28
CLPB-210ENST00000539148 GNAI1P63096 354 aa13.32□□□□□ -0.28
CLPB-210ENST00000539148 GOLGA2Q08379 1002 aa13.32□□□□□ -0.28
CLPB-210ENST00000539148 KRT27Q7Z3Y8 459 aa13.32□□□□□ -0.28
CLPB-210ENST00000539148 WWC1Q8IX03 1113 aa13.32□□□□□ -0.28
CLPB-210ENST00000539148 MYH16Q9H6N6 1097 aa13.32□□□□□ -0.28
CLPB-210ENST00000539148 ADAMTS7Q9UKP4 1686 aa13.31□□□□□ -0.28
CLPB-210ENST00000539148 CYP27B1O15528 508 aa13.31□□□□□ -0.28
CLPB-210ENST00000539148 CABP4P57796 275 aa13.31□□□□□ -0.28
CLPB-210ENST00000539148 FAM196AQ6ZSG2 479 aa13.31□□□□□ -0.28
CLPB-210ENST00000539148 ITGB4P16144 1822 aa13.31□□□□□ -0.28
CLPB-210ENST00000539148 RNMTO43148 476 aaKnown RBP13.3□□□□□ -0.28
CLPB-210ENST00000539148 MPRIPQ6WCQ1 1025 aa13.3□□□□□ -0.28
CLPB-210ENST00000539148 SALL2Q9Y467 1007 aaPredicted RBP13.3□□□□□ -0.28
CLPB-210ENST00000539148 BCL9O00512 1426 aa13.3□□□□□ -0.28
CLPB-210ENST00000539148 E9PSI1 815 aa13.29□□□□□ -0.28
CLPB-210ENST00000539148 TAF7Q15545 349 aaPredicted RBP13.29□□□□□ -0.28
CLPB-210ENST00000539148 IFT57Q9NWB7 429 aa13.29□□□□□ -0.28
CLPB-210ENST00000539148 TMOD3Q9NYL9 352 aa13.29□□□□□ -0.28
CLPB-210ENST00000539148 TRIM35Q9UPQ4 493 aa13.29□□□□□ -0.28
CLPB-210ENST00000539148 DOT1LQ8TEK3 1739 aa13.29□□□□□ -0.28
CLPB-210ENST00000539148 CEMIPQ8WUJ3 1361 aa13.29□□□□□ -0.28
CLPB-210ENST00000539148 SIPA1L3O60292 1781 aaPredicted RBP13.28□□□□□ -0.28
CLPB-210ENST00000539148 SBF2Q86WG5 1849 aa13.28□□□□□ -0.28
CLPB-210ENST00000539148 NEFLP07196 543 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms