RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CD2APQ9Y5K6 639 aa17.76■□□□□ 0.43
CLSTN3-208ENST00000538933 KIF3CO14782 793 aa17.75■□□□□ 0.43
CLSTN3-208ENST00000538933 NEUROD1Q13562 356 aa17.75■□□□□ 0.43
CLSTN3-208ENST00000538933 DDX54Q8TDD1 881 aaKnown RBP17.75■□□□□ 0.43
CLSTN3-208ENST00000538933 KTN1Q86UP2 1357 aaKnown RBP17.75■□□□□ 0.43
CLSTN3-208ENST00000538933 ANKRD36BQ8N2N9 1353 aa17.75■□□□□ 0.43
CLSTN3-208ENST00000538933 MSL1Q68DK7 614 aa17.73■□□□□ 0.43
CLSTN3-208ENST00000538933 NME9Q86XW9 330 aa17.71■□□□□ 0.43
CLSTN3-208ENST00000538933 SYTL4Q96C24 671 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-208ENST00000538933 SIN3AQ96ST3 1273 aa17.71■□□□□ 0.43
CLSTN3-208ENST00000538933 CCNL1Q9UK58 526 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-208ENST00000538933 TAF1LQ8IZX4 1826 aa17.7■□□□□ 0.42
CLSTN3-208ENST00000538933 MSH5O43196 834 aa17.7■□□□□ 0.42
CLSTN3-208ENST00000538933 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLSTN3-208ENST00000538933 FAM208AQ9UK61 1670 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-208ENST00000538933 CD163L1Q9NR16 1453 aa17.69■□□□□ 0.42
CLSTN3-208ENST00000538933 SBNO2Q9Y2G9 1366 aa17.69■□□□□ 0.42
CLSTN3-208ENST00000538933 C5P01031 1676 aa17.69■□□□□ 0.42
CLSTN3-208ENST00000538933 APLP1P51693 650 aa17.69■□□□□ 0.42
CLSTN3-208ENST00000538933 RGPD2P0DJD1 1756 aa17.68■□□□□ 0.42
CLSTN3-208ENST00000538933 ZEB1P37275 1124 aaPredicted RBP17.67■□□□□ 0.42
CLSTN3-208ENST00000538933 IP6K1Q92551 441 aa17.67■□□□□ 0.42
CLSTN3-208ENST00000538933 TONSLQ96HA7 1378 aa17.66■□□□□ 0.42
CLSTN3-208ENST00000538933 TOGARAM1Q9Y4F4 1720 aa17.64■□□□□ 0.41
CLSTN3-208ENST00000538933 AMIGO3Q86WK7 504 aa17.64■□□□□ 0.41
CLSTN3-208ENST00000538933 ZCRB1Q8TBF4 217 aaKnown RBP17.64■□□□□ 0.41
CLSTN3-208ENST00000538933 IGSF1Q8N6C5 1336 aa17.64■□□□□ 0.41
CLSTN3-208ENST00000538933 CICQ96RK0 1608 aaPredicted RBP17.64■□□□□ 0.41
CLSTN3-208ENST00000538933 COL13A1Q5TAT6 717 aaPredicted RBP17.63■□□□□ 0.41
CLSTN3-208ENST00000538933 USP47Q96K76 1375 aa17.63■□□□□ 0.41
CLSTN3-208ENST00000538933 UBR3Q6ZT12 1888 aa17.63■□□□□ 0.41
CLSTN3-208ENST00000538933 TOMM70O94826 608 aa17.62■□□□□ 0.41
CLSTN3-208ENST00000538933 FLAD1Q8NFF5 587 aa17.62■□□□□ 0.41
CLSTN3-208ENST00000538933 LTV1Q96GA3 475 aaPredicted RBP17.62■□□□□ 0.41
CLSTN3-208ENST00000538933 MEGF6O75095 1541 aa17.62■□□□□ 0.41
CLSTN3-208ENST00000538933 WDR90Q96KV7 1748 aa17.61■□□□□ 0.41
CLSTN3-208ENST00000538933 WWC3Q9ULE0 1092 aa17.61■□□□□ 0.41
CLSTN3-208ENST00000538933 C4BP0C0L5 1744 aa17.6■□□□□ 0.41
CLSTN3-208ENST00000538933 L3MBTL2Q969R5 705 aa17.59■□□□□ 0.41
CLSTN3-208ENST00000538933 KIAA1551Q9HCM1 1747 aa17.58■□□□□ 0.41
CLSTN3-208ENST00000538933 EDC4Q6P2E9 1401 aaKnown RBP17.58■□□□□ 0.41
CLSTN3-208ENST00000538933 JMYQ8N9B5 988 aa17.58■□□□□ 0.4
CLSTN3-208ENST00000538933 TIMELESSQ9UNS1 1208 aa17.58■□□□□ 0.4
CLSTN3-208ENST00000538933 KIF13BQ9NQT8 1826 aa17.57■□□□□ 0.4
CLSTN3-208ENST00000538933 SMIM5Q71RC9 77 aa17.57■□□□□ 0.4
CLSTN3-208ENST00000538933 SLC12A5Q9H2X9 1139 aa17.57■□□□□ 0.4
CLSTN3-208ENST00000538933 ITGB4P16144 1822 aa17.56■□□□□ 0.4
CLSTN3-208ENST00000538933 HOXC9P31274 260 aa17.56■□□□□ 0.4
CLSTN3-208ENST00000538933 MAP3K19Q56UN5 1328 aa17.55■□□□□ 0.4
CLSTN3-208ENST00000538933 FBLN1P23142 703 aa17.55■□□□□ 0.4
CLSTN3-208ENST00000538933 NMRK2Q9NPI5 230 aa17.55■□□□□ 0.4
CLSTN3-208ENST00000538933 MAP2P11137 1827 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-208ENST00000538933 PALLDQ8WX93 1383 aa17.54■□□□□ 0.4
CLSTN3-208ENST00000538933 N4BP2Q86UW6 1770 aaPredicted RBP17.54■□□□□ 0.4
CLSTN3-208ENST00000538933 HMGB2P26583 209 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-208ENST00000538933 HTRA3P83110 453 aa17.54■□□□□ 0.4
CLSTN3-208ENST00000538933 NBPF6Q5VWK0 638 aa17.54■□□□□ 0.4
CLSTN3-208ENST00000538933 KLRG1Q96E93 195 aa17.54■□□□□ 0.4
CLSTN3-208ENST00000538933 NBPF4Q96M43 638 aa17.54■□□□□ 0.4
CLSTN3-208ENST00000538933 HDGFL2Q7Z4V5 671 aaPredicted RBP17.53■□□□□ 0.4
CLSTN3-208ENST00000538933 A0A1W2PP64 1363 aa17.53■□□□□ 0.4
CLSTN3-208ENST00000538933 ROCK2O75116 1388 aaKnown RBP17.53■□□□□ 0.4
CLSTN3-208ENST00000538933 CGNL1Q0VF96 1302 aa17.52■□□□□ 0.4
CLSTN3-208ENST00000538933 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-208ENST00000538933 CAPN15O75808 1086 aa17.52■□□□□ 0.4
CLSTN3-208ENST00000538933 PRELPP51888 382 aa17.52■□□□□ 0.4
CLSTN3-208ENST00000538933 TMC1Q8TDI8 760 aa17.52■□□□□ 0.4
CLSTN3-208ENST00000538933 PXDNLA1KZ92 1463 aa17.51■□□□□ 0.39
CLSTN3-208ENST00000538933 RBM46Q8TBY0 533 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-208ENST00000538933 BRCA1P38398 1863 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-208ENST00000538933 MPRIPQ6WCQ1 1025 aa17.5■□□□□ 0.39
CLSTN3-208ENST00000538933 AK7Q96M32 723 aa17.5■□□□□ 0.39
CLSTN3-208ENST00000538933 PHF14O94880 888 aa17.49■□□□□ 0.39
CLSTN3-208ENST00000538933 SSFA2P28290 1259 aa17.49■□□□□ 0.39
CLSTN3-208ENST00000538933 USHBP1Q8N6Y0 703 aa17.49■□□□□ 0.39
CLSTN3-208ENST00000538933 TERF2IPQ9NYB0 399 aa17.49■□□□□ 0.39
CLSTN3-208ENST00000538933 CYP27B1O15528 508 aa17.48■□□□□ 0.39
CLSTN3-208ENST00000538933 AMPHP49418 695 aa17.48■□□□□ 0.39
CLSTN3-208ENST00000538933 TNS4Q8IZW8 715 aa17.48■□□□□ 0.39
CLSTN3-208ENST00000538933 LINC00116Q8NCU8 138 aa17.47■□□□□ 0.39
CLSTN3-208ENST00000538933 SMARCC1Q92922 1105 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-208ENST00000538933 NSD3Q9BZ95 1437 aa17.47■□□□□ 0.39
CLSTN3-208ENST00000538933 TGFB2P61812 414 aa17.46■□□□□ 0.39
CLSTN3-208ENST00000538933 FSTL1Q12841 308 aa17.46■□□□□ 0.39
CLSTN3-208ENST00000538933 RAPGEF4Q8WZA2 1011 aa17.46■□□□□ 0.39
CLSTN3-208ENST00000538933 PIGBQ92521 554 aa17.46■□□□□ 0.39
CLSTN3-208ENST00000538933 PCDH11XQ9BZA7 1347 aa17.46■□□□□ 0.38
CLSTN3-208ENST00000538933 PCDH11YQ9BZA8 1340 aa17.46■□□□□ 0.38
CLSTN3-208ENST00000538933 ARFGEF1Q9Y6D6 1849 aa17.45■□□□□ 0.38
CLSTN3-208ENST00000538933 A0A0G2JLW4 131 aa17.45■□□□□ 0.38
CLSTN3-208ENST00000538933 ARHGAP27Q6ZUM4 889 aa17.45■□□□□ 0.38
CLSTN3-208ENST00000538933 COG3Q96JB2 828 aa17.45■□□□□ 0.38
CLSTN3-208ENST00000538933 PUS7Q96PZ0 661 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-208ENST00000538933 BCS1LQ9Y276 419 aa17.45■□□□□ 0.38
CLSTN3-208ENST00000538933 RTL1A6NKG5 1358 aa17.44■□□□□ 0.38
CLSTN3-208ENST00000538933 MMP10P09238 476 aa17.44■□□□□ 0.38
CLSTN3-208ENST00000538933 TATP17735 454 aaPredicted RBP17.44■□□□□ 0.38
CLSTN3-208ENST00000538933 PKD1L3Q7Z443 1732 aa17.44■□□□□ 0.38
CLSTN3-208ENST00000538933 LOC102724428A0A0B4J2F2 783 aa17.43■□□□□ 0.38
CLSTN3-208ENST00000538933 SIK1P57059 783 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms