RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 PRIM1P49642 420 aaKnown RBP19.83■□□□□ 0.77
SMARCA4-206ENST00000538456 C1QTNF8P60827 252 aa19.83■□□□□ 0.77
SMARCA4-206ENST00000538456 SLC16A10Q8TF71 515 aa19.83■□□□□ 0.77
SMARCA4-206ENST00000538456 ANKRD36BQ8N2N9 1353 aa19.83■□□□□ 0.76
SMARCA4-206ENST00000538456 MAP3K19Q56UN5 1328 aa19.81■□□□□ 0.76
SMARCA4-206ENST00000538456 FBLN1P23142 703 aa19.81■□□□□ 0.76
SMARCA4-206ENST00000538456 NSD2O96028 1365 aa19.81■□□□□ 0.76
SMARCA4-206ENST00000538456 MEGF6O75095 1541 aa19.81■□□□□ 0.76
SMARCA4-206ENST00000538456 HOXC9P31274 260 aa19.8■□□□□ 0.76
SMARCA4-206ENST00000538456 AMPHP49418 695 aa19.8■□□□□ 0.76
SMARCA4-206ENST00000538456 NLGN2Q8NFZ4 835 aa19.8■□□□□ 0.76
SMARCA4-206ENST00000538456 COG3Q96JB2 828 aa19.8■□□□□ 0.76
SMARCA4-206ENST00000538456 MSH5O43196 834 aa19.78■□□□□ 0.76
SMARCA4-206ENST00000538456 ZCRB1Q8TBF4 217 aaKnown RBP19.78■□□□□ 0.76
SMARCA4-206ENST00000538456 CCNL1Q9UK58 526 aaPredicted RBP19.78■□□□□ 0.76
SMARCA4-206ENST00000538456 TONSLQ96HA7 1378 aa19.78■□□□□ 0.76
SMARCA4-206ENST00000538456 PUS7Q96PZ0 661 aaKnown RBP19.76■□□□□ 0.75
SMARCA4-206ENST00000538456 GIGYF1O75420 1035 aaPredicted RBP19.75■□□□□ 0.75
SMARCA4-206ENST00000538456 C5P01031 1676 aa19.75■□□□□ 0.75
SMARCA4-206ENST00000538456 USP47Q96K76 1375 aa19.74■□□□□ 0.75
SMARCA4-206ENST00000538456 RRS1Q15050 365 aaKnown RBP19.74■□□□□ 0.75
SMARCA4-206ENST00000538456 USHBP1Q8N6Y0 703 aa19.74■□□□□ 0.75
SMARCA4-206ENST00000538456 TESK2Q96S53 571 aa19.74■□□□□ 0.75
SMARCA4-206ENST00000538456 ST20-MTHFSA0A0A6YYL1 179 aa19.73■□□□□ 0.75
SMARCA4-206ENST00000538456 MSL1Q68DK7 614 aa19.73■□□□□ 0.75
SMARCA4-206ENST00000538456 RTL1A6NKG5 1358 aa19.72■□□□□ 0.75
SMARCA4-206ENST00000538456 YBX3P16989 372 aaKnown RBP eCLIP19.72■□□□□ 0.751e-7■■□□□ 13.4
SMARCA4-206ENST00000538456 COL23A1Q86Y22 540 aaPredicted RBP19.72■□□□□ 0.75
SMARCA4-206ENST00000538456 SMG6Q86US8 1419 aaKnown RBP19.71■□□□□ 0.75
SMARCA4-206ENST00000538456 NBPF6Q5VWK0 638 aa19.71■□□□□ 0.75
SMARCA4-206ENST00000538456 NBPF4Q96M43 638 aa19.71■□□□□ 0.75
SMARCA4-206ENST00000538456 TAF1LQ8IZX4 1826 aa19.7■□□□□ 0.74
SMARCA4-206ENST00000538456 RAPGEF4Q8WZA2 1011 aa19.7■□□□□ 0.74
SMARCA4-206ENST00000538456 CEP350Q5VT06 3117 aa19.7■□□□□ 0.74
SMARCA4-206ENST00000538456 GGNBP2Q9H3C7 697 aa19.69■□□□□ 0.74
SMARCA4-206ENST00000538456 KIF20BQ96Q89 1820 aa19.68■□□□□ 0.74
SMARCA4-206ENST00000538456 GRIN3BO60391 1043 aa19.67■□□□□ 0.74
SMARCA4-206ENST00000538456 CGNL1Q0VF96 1302 aa19.67■□□□□ 0.74
SMARCA4-206ENST00000538456 TOGARAM1Q9Y4F4 1720 aa19.66■□□□□ 0.74
SMARCA4-206ENST00000538456 FYB1O15117 783 aa19.66■□□□□ 0.74
SMARCA4-206ENST00000538456 TATP17735 454 aaPredicted RBP19.66■□□□□ 0.74
SMARCA4-206ENST00000538456 ITGB4P16144 1822 aa19.66■□□□□ 0.74
SMARCA4-206ENST00000538456 PALLDQ8WX93 1383 aa19.66■□□□□ 0.74
SMARCA4-206ENST00000538456 PCDH11XQ9BZA7 1347 aa19.65■□□□□ 0.74
SMARCA4-206ENST00000538456 PCDH11YQ9BZA8 1340 aa19.65■□□□□ 0.74
SMARCA4-206ENST00000538456 HSP90AB2PQ58FF8 381 aa19.64■□□□□ 0.73
SMARCA4-206ENST00000538456 MPRIPQ6WCQ1 1025 aa19.64■□□□□ 0.73
SMARCA4-206ENST00000538456 C4BP0C0L5 1744 aa19.64■□□□□ 0.73
SMARCA4-206ENST00000538456 ATP10DQ9P241 1426 aa19.63■□□□□ 0.73
SMARCA4-206ENST00000538456 INSRP06213 1382 aa19.62■□□□□ 0.73
SMARCA4-206ENST00000538456 SLC24A1O60721 1099 aa19.62■□□□□ 0.73
SMARCA4-206ENST00000538456 FLT4P35916 1363 aa19.61■□□□□ 0.73
SMARCA4-206ENST00000538456 PKD1L3Q7Z443 1732 aa19.61■□□□□ 0.73
SMARCA4-206ENST00000538456 UBR3Q6ZT12 1888 aa19.6■□□□□ 0.73
SMARCA4-206ENST00000538456 CYP27B1O15528 508 aa19.6■□□□□ 0.73
SMARCA4-206ENST00000538456 CD2APQ9Y5K6 639 aa19.6■□□□□ 0.73
SMARCA4-206ENST00000538456 PHF14O94880 888 aa19.59■□□□□ 0.73
SMARCA4-206ENST00000538456 TMF1P82094 1093 aa19.59■□□□□ 0.73
SMARCA4-206ENST00000538456 AMIGO3Q86WK7 504 aa19.59■□□□□ 0.73
SMARCA4-206ENST00000538456 FLAD1Q8NFF5 587 aa19.59■□□□□ 0.73
SMARCA4-206ENST00000538456 AK7Q96M32 723 aa19.59■□□□□ 0.73
SMARCA4-206ENST00000538456 WWC3Q9ULE0 1092 aa19.59■□□□□ 0.73
SMARCA4-206ENST00000538456 SMIM5Q71RC9 77 aa19.58■□□□□ 0.72
SMARCA4-206ENST00000538456 ZNF526Q8TF50 670 aaPredicted RBP19.57■□□□□ 0.72
SMARCA4-206ENST00000538456 SMARCC1Q92922 1105 aaPredicted RBP19.56■□□□□ 0.72
SMARCA4-206ENST00000538456 GPBP1L1Q9HC44 474 aaPredicted RBP19.56■□□□□ 0.72
SMARCA4-206ENST00000538456 EMILIN1Q9Y6C2 1016 aa19.56■□□□□ 0.72
SMARCA4-206ENST00000538456 KIF24Q5T7B8 1368 aa19.56■□□□□ 0.72
SMARCA4-206ENST00000538456 HMGB2P26583 209 aaKnown RBP19.55■□□□□ 0.72
SMARCA4-206ENST00000538456 MAP2P11137 1827 aaKnown RBP19.55■□□□□ 0.72
SMARCA4-206ENST00000538456 IGSF1Q8N6C5 1336 aa19.54■□□□□ 0.72
SMARCA4-206ENST00000538456 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.54■□□□□ 0.72
SMARCA4-206ENST00000538456 PPM1GO15355 546 aaPredicted RBP19.54■□□□□ 0.72
SMARCA4-206ENST00000538456 PIGBQ92521 554 aa19.54■□□□□ 0.72
SMARCA4-206ENST00000538456 ADCY9O60503 1353 aa19.54■□□□□ 0.72
SMARCA4-206ENST00000538456 ANKRD26Q9UPS8 1709 aa19.53■□□□□ 0.72
SMARCA4-206ENST00000538456 NSD3Q9BZ95 1437 aa19.52■□□□□ 0.72
SMARCA4-206ENST00000538456 LINC00116Q8NCU8 138 aa19.51■□□□□ 0.71
SMARCA4-206ENST00000538456 CARD14Q9BXL6 1004 aa19.51■□□□□ 0.71
SMARCA4-206ENST00000538456 LOC102724428A0A0B4J2F2 783 aa19.5■□□□□ 0.71
SMARCA4-206ENST00000538456 SIK1P57059 783 aa19.5■□□□□ 0.71
SMARCA4-206ENST00000538456 CDCA8Q53HL2 280 aa19.5■□□□□ 0.71
SMARCA4-206ENST00000538456 IFFO2Q5TF58 517 aa19.5■□□□□ 0.71
SMARCA4-206ENST00000538456 SPG7Q9UQ90 795 aa19.5■□□□□ 0.71
SMARCA4-206ENST00000538456 NCAPD2Q15021 1401 aa19.5■□□□□ 0.71
SMARCA4-206ENST00000538456 SSFA2P28290 1259 aa19.49■□□□□ 0.71
SMARCA4-206ENST00000538456 TMOD3Q9NYL9 352 aa19.49■□□□□ 0.71
SMARCA4-206ENST00000538456 GNPATO15228 680 aa19.48■□□□□ 0.71
SMARCA4-206ENST00000538456 NKX1-1Q15270 411 aaPredicted RBP19.48■□□□□ 0.71
SMARCA4-206ENST00000538456 ASAP1Q9ULH1 1129 aa19.48■□□□□ 0.71
SMARCA4-206ENST00000538456 HSPA6P17066 643 aa19.46■□□□□ 0.71
SMARCA4-206ENST00000538456 ATP6V1AP38606 617 aa19.46■□□□□ 0.71
SMARCA4-206ENST00000538456 ITPK1Q13572 414 aa19.46■□□□□ 0.71
SMARCA4-206ENST00000538456 N4BP2Q86UW6 1770 aaPredicted RBP19.45■□□□□ 0.7
SMARCA4-206ENST00000538456 EYA1Q99502 592 aa19.45■□□□□ 0.7
SMARCA4-206ENST00000538456 WASHC2AQ641Q2 1341 aa19.44■□□□□ 0.7
SMARCA4-206ENST00000538456 KIF13BQ9NQT8 1826 aa19.44■□□□□ 0.7
SMARCA4-206ENST00000538456 CICQ96RK0 1608 aaPredicted RBP19.43■□□□□ 0.7
SMARCA4-206ENST00000538456 MMP10P09238 476 aa19.43■□□□□ 0.7
SMARCA4-206ENST00000538456 PHKG2P15735 406 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms