RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CDK19Q9BWU1 502 aa13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 REREQ9P2R6 1566 aa13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 ADAMTS8Q9UP79 889 aa13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 RNF216Q9NWF9 866 aaPredicted RBP13.18□□□□□ -0.3
CLSTN3-207ENST00000537408 CLEC17AQ6ZS10 378 aa13.18□□□□□ -0.3
CLSTN3-207ENST00000537408 GEMIN8Q9NWZ8 242 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-207ENST00000537408 DCAF8L1A6NGE4 600 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 FAM177BA6PVY3 158 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 PANK1Q8TE04 598 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 ERICH4A6NGS2 130 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 KRT222Q8N1A0 295 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 NUDT16Q96DE0 195 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 TSPY26PQ9H489 355 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 STRN4Q9NRL3 753 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 CEP170BQ9Y4F5 1589 aaPredicted RBP13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 GCC2Q8IWJ2 1684 aa13.17□□□□□ -0.3
CLSTN3-207ENST00000537408 GOLGA6L6A8MZA4 724 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 PHF14O94880 888 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 RNF214Q8ND24 703 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 JARID2Q92833 1246 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 PLA2R1Q13018 1463 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 EIF2AK4Q9P2K8 1649 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 ANKRD7Q92527 254 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 CTR9Q6PD62 1173 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 CABP2Q9NPB3 220 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 MBD3O95983 291 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 NUTM2GQ5VZR2 741 aa13.16□□□□□ -0.3
CLSTN3-207ENST00000537408 TPM3P06753 285 aa13.15□□□□□ -0.3
CLSTN3-207ENST00000537408 ILDR1Q86SU0 546 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-207ENST00000537408 WASLO00401 505 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-207ENST00000537408 FKBP5Q13451 457 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-207ENST00000537408 ZNF772Q68DY9 489 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-207ENST00000537408 PPRC1Q5VV67 1664 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-207ENST00000537408 PLEKHH1Q9ULM0 1364 aa13.15□□□□□ -0.3
CLSTN3-207ENST00000537408 TERF2Q15554 542 aa13.14□□□□□ -0.31
CLSTN3-207ENST00000537408 SYCE3A1L190 88 aa13.14□□□□□ -0.31
CLSTN3-207ENST00000537408 SLFN14P0C7P3 912 aa13.14□□□□□ -0.31
CLSTN3-207ENST00000537408 LTV1Q96GA3 475 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-207ENST00000537408 PRPF40AO75400 957 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 GTF2A1P52655 376 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 MMP14P50281 582 aa13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 FRMPD1Q5SYB0 1578 aa13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 TULP2O00295 520 aa13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 RIOK3O14730 519 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 SYCP1Q15431 976 aa13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 NGEFQ8N5V2 710 aa13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 FAM184AQ8NB25 1140 aa13.13□□□□□ -0.31
CLSTN3-207ENST00000537408 ATAD2Q6PL18 1390 aa13.12□□□□□ -0.31
CLSTN3-207ENST00000537408 WWC1Q8IX03 1113 aa13.12□□□□□ -0.31
CLSTN3-207ENST00000537408 RALGAPBQ86X10 1494 aa13.11□□□□□ -0.31
CLSTN3-207ENST00000537408 UVSSAQ2YD98 709 aa13.11□□□□□ -0.31
CLSTN3-207ENST00000537408 LMBRD1Q9NUN5 540 aa13.11□□□□□ -0.31
CLSTN3-207ENST00000537408 HSPA1LP34931 641 aa13.11□□□□□ -0.31
CLSTN3-207ENST00000537408 GOLGA6L1Q8N7Z2 621 aa13.11□□□□□ -0.31
CLSTN3-207ENST00000537408 KCNH5Q8NCM2 988 aa13.11□□□□□ -0.31
CLSTN3-207ENST00000537408 NLRP2Q9NX02 1062 aa13.11□□□□□ -0.31
CLSTN3-207ENST00000537408 TRERF1Q96PN7 1200 aa13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 SPTLC3Q9NUV7 552 aa13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 TOM1L2Q6ZVM7 507 aa13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 RBM27Q9P2N5 1060 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 DDX41Q9UJV9 622 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 ZNF521Q96K83 1311 aa13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 HMGB2P26583 209 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 RASSF4Q9H2L5 321 aa13.1□□□□□ -0.31
CLSTN3-207ENST00000537408 ZC3H6P61129 1189 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 LMOD3Q0VAK6 560 aa13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 MYCBPQ99417 103 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 CABP1Q9NZU7 370 aa13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 CNPY4Q8N129 248 aa13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 CWC22Q9HCG8 908 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 CTNNA3Q9UI47 895 aa13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 MORC2Q9Y6X9 1032 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 PRDM15P57071 1507 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-207ENST00000537408 CAPN2P17655 700 aa13.08□□□□□ -0.31
CLSTN3-207ENST00000537408 TEX35Q5T0J7 233 aa13.08□□□□□ -0.31
CLSTN3-207ENST00000537408 PCDHB15Q9Y5E8 787 aa13.08□□□□□ -0.31
CLSTN3-207ENST00000537408 ZC3H13Q5T200 1668 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-207ENST00000537408 PATL2C9JE40 543 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-207ENST00000537408 CTIFO43310 598 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-207ENST00000537408 TRMT2AQ8IZ69 625 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-207ENST00000537408 FEZ2Q9UHY8 353 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-207ENST00000537408 RAPGEF4Q8WZA2 1011 aa13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 RSPH14Q9UHP6 348 aa13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 TET3O43151 1660 aa13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 U2AF1L5P0DN76 240 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 U2AF1Q01081 240 aaKnown RBP eCLIP13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 LRRIQ1Q96JM4 1722 aa13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 GAS2L2Q8NHY3 880 aa13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 SIRT1Q96EB6 747 aa13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 TTC12Q9H892 705 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-207ENST00000537408 LMTK2Q8IWU2 1503 aa13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 ORAI2Q96SN7 254 aa13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 TRPM2O94759 1503 aa13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 CWC15Q9P013 229 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 CPS1P31327 1500 aa13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 HSP90B1P14625 803 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 MPNDQ8N594 471 aa13.06□□□□□ -0.32
CLSTN3-207ENST00000537408 ZBTB9Q96C00 473 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms