RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 AKT1S1Q96B36 256 aa17.31■□□□□ 0.36
PRKDC-207ENST00000536483 KCNQ4P56696 695 aa17.3■□□□□ 0.36
PRKDC-207ENST00000536483 ZCRB1Q8TBF4 217 aaKnown RBP17.3■□□□□ 0.36
PRKDC-207ENST00000536483 FAM208AQ9UK61 1670 aaKnown RBP17.29■□□□□ 0.36
PRKDC-207ENST00000536483 FYB1O15117 783 aa17.29■□□□□ 0.36
PRKDC-207ENST00000536483 RRS1Q15050 365 aaKnown RBP17.29■□□□□ 0.36
PRKDC-207ENST00000536483 GGNBP2Q9H3C7 697 aa17.28■□□□□ 0.36
PRKDC-207ENST00000536483 HSPA5P11021 654 aaKnown RBP17.27■□□□□ 0.36
PRKDC-207ENST00000536483 NBPF6Q5VWK0 638 aa17.27■□□□□ 0.36
PRKDC-207ENST00000536483 NBPF4Q96M43 638 aa17.27■□□□□ 0.36
PRKDC-207ENST00000536483 CARD14Q9BXL6 1004 aa17.27■□□□□ 0.36
PRKDC-207ENST00000536483 MEGF6O75095 1541 aa17.26■□□□□ 0.35
PRKDC-207ENST00000536483 PNPLA7Q6ZV29 1317 aa17.26■□□□□ 0.35
PRKDC-207ENST00000536483 USHBP1Q8N6Y0 703 aa17.26■□□□□ 0.35
PRKDC-207ENST00000536483 ZNF784Q8NCA9 323 aaPredicted RBP17.26■□□□□ 0.35
PRKDC-207ENST00000536483 SLC16A10Q8TF71 515 aa17.26■□□□□ 0.35
PRKDC-207ENST00000536483 TFCP2L1Q9NZI6 479 aa17.26■□□□□ 0.35
PRKDC-207ENST00000536483 NSD2O96028 1365 aa17.26■□□□□ 0.35
PRKDC-207ENST00000536483 MAP3K5Q99683 1374 aa17.26■□□□□ 0.35
PRKDC-207ENST00000536483 RGPD2P0DJD1 1756 aa17.25■□□□□ 0.35
PRKDC-207ENST00000536483 RTL1A6NKG5 1358 aa17.25■□□□□ 0.35
PRKDC-207ENST00000536483 GOLGB1Q14789 3259 aaKnown RBP17.24■□□□□ 0.35
PRKDC-207ENST00000536483 POLD1P28340 1107 aa17.24■□□□□ 0.35
PRKDC-207ENST00000536483 KLHL34Q8N239 644 aa17.24■□□□□ 0.35
PRKDC-207ENST00000536483 DOT1LQ8TEK3 1739 aa17.24■□□□□ 0.35
PRKDC-207ENST00000536483 CCNL1Q9UK58 526 aaPredicted RBP17.23■□□□□ 0.35
PRKDC-207ENST00000536483 SHANK3Q9BYB0 1731 aa17.22■□□□□ 0.35
PRKDC-207ENST00000536483 HSP90AB2PQ58FF8 381 aa17.22■□□□□ 0.35
PRKDC-207ENST00000536483 RAPGEF4Q8WZA2 1011 aa17.22■□□□□ 0.35
PRKDC-207ENST00000536483 CGNL1Q0VF96 1302 aa17.21■□□□□ 0.35
PRKDC-207ENST00000536483 KIF24Q5T7B8 1368 aa17.21■□□□□ 0.35
PRKDC-207ENST00000536483 GPR162Q16538 588 aa17.21■□□□□ 0.35
PRKDC-207ENST00000536483 SMG6Q86US8 1419 aaKnown RBP17.21■□□□□ 0.34
PRKDC-207ENST00000536483 TATP17735 454 aaPredicted RBP17.2■□□□□ 0.34
PRKDC-207ENST00000536483 QSER1Q2KHR3 1735 aa17.2■□□□□ 0.34
PRKDC-207ENST00000536483 LY75O60449 1722 aa17.19■□□□□ 0.34
PRKDC-207ENST00000536483 INSRP06213 1382 aa17.19■□□□□ 0.34
PRKDC-207ENST00000536483 NSD3Q9BZ95 1437 aa17.19■□□□□ 0.34
PRKDC-207ENST00000536483 MSH5O43196 834 aa17.18■□□□□ 0.34
PRKDC-207ENST00000536483 COL23A1Q86Y22 540 aaPredicted RBP17.18■□□□□ 0.34
PRKDC-207ENST00000536483 PELP1Q8IZL8 1130 aaKnown RBP17.18■□□□□ 0.34
PRKDC-207ENST00000536483 TUBGCP6Q96RT7 1819 aa17.18■□□□□ 0.34
PRKDC-207ENST00000536483 CHD4Q14839 1912 aa17.17■□□□□ 0.34
PRKDC-207ENST00000536483 NLGN2Q8NFZ4 835 aa17.17■□□□□ 0.34
PRKDC-207ENST00000536483 PCDH11XQ9BZA7 1347 aa17.17■□□□□ 0.34
PRKDC-207ENST00000536483 PCDH11YQ9BZA8 1340 aa17.17■□□□□ 0.34
PRKDC-207ENST00000536483 FLT4P35916 1363 aa17.16■□□□□ 0.34
PRKDC-207ENST00000536483 MPRIPQ6WCQ1 1025 aa17.16■□□□□ 0.34
PRKDC-207ENST00000536483 COL24A1Q17RW2 1714 aa17.16■□□□□ 0.34
PRKDC-207ENST00000536483 EMILIN1Q9Y6C2 1016 aa17.15■□□□□ 0.34
PRKDC-207ENST00000536483 CYP27B1O15528 508 aa17.14■□□□□ 0.33
PRKDC-207ENST00000536483 MSL1Q68DK7 614 aa17.14■□□□□ 0.33
PRKDC-207ENST00000536483 KIF20BQ96Q89 1820 aa17.13■□□□□ 0.33
PRKDC-207ENST00000536483 PANK3Q9H999 370 aa17.13■□□□□ 0.33
PRKDC-207ENST00000536483 PALLDQ8WX93 1383 aa17.13■□□□□ 0.33
PRKDC-207ENST00000536483 PPM1GO15355 546 aaPredicted RBP17.12■□□□□ 0.33
PRKDC-207ENST00000536483 C1QTNF8P60827 252 aa17.1■□□□□ 0.33
PRKDC-207ENST00000536483 KIF7Q2M1P5 1343 aa17.1■□□□□ 0.33
PRKDC-207ENST00000536483 YBX3P16989 372 aaKnown RBP eCLIP17.09■□□□□ 0.339e-9■■□□□ 11.4
PRKDC-207ENST00000536483 FLAD1Q8NFF5 587 aa17.09■□□□□ 0.33
PRKDC-207ENST00000536483 PIGBQ92521 554 aa17.09■□□□□ 0.33
PRKDC-207ENST00000536483 WASHC2AQ641Q2 1341 aa17.09■□□□□ 0.33
PRKDC-207ENST00000536483 C5P01031 1676 aa17.08■□□□□ 0.32
PRKDC-207ENST00000536483 HMGB2P26583 209 aaKnown RBP17.08■□□□□ 0.32
PRKDC-207ENST00000536483 SMARCC1Q92922 1105 aaPredicted RBP17.08■□□□□ 0.32
PRKDC-207ENST00000536483 SENP3-EIF4A1A0A087X0R7 540 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 GRIN3BO60391 1043 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 NKX1-1Q15270 411 aaPredicted RBP17.07■□□□□ 0.32
PRKDC-207ENST00000536483 AMIGO3Q86WK7 504 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 AK7Q96M32 723 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 EYA1Q99502 592 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 POLR3GLQ9BT43 218 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 POLKQ9UBT6 870 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 SPG7Q9UQ90 795 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 TOGARAM1Q9Y4F4 1720 aa17.07■□□□□ 0.32
PRKDC-207ENST00000536483 NCAPD2Q15021 1401 aa17.06■□□□□ 0.32
PRKDC-207ENST00000536483 PER1O15534 1290 aaPredicted RBP17.06■□□□□ 0.32
PRKDC-207ENST00000536483 SMIM5Q71RC9 77 aa17.06■□□□□ 0.32
PRKDC-207ENST00000536483 ANKRD26Q9UPS8 1709 aa17.05■□□□□ 0.32
PRKDC-207ENST00000536483 PHF14O94880 888 aa17.05■□□□□ 0.32
PRKDC-207ENST00000536483 CD2APQ9Y5K6 639 aa17.05■□□□□ 0.32
PRKDC-207ENST00000536483 ITGB4P16144 1822 aa17.05■□□□□ 0.32
PRKDC-207ENST00000536483 TAF1LQ8IZX4 1826 aa17.05■□□□□ 0.32
PRKDC-207ENST00000536483 PKD1L3Q7Z443 1732 aa17.04■□□□□ 0.32
PRKDC-207ENST00000536483 GIGYF1O75420 1035 aaPredicted RBP17.04■□□□□ 0.32
PRKDC-207ENST00000536483 AMER1Q5JTC6 1135 aaPredicted RBP17.04■□□□□ 0.32
PRKDC-207ENST00000536483 C4BP0C0L5 1744 aa17.04■□□□□ 0.32
PRKDC-207ENST00000536483 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.03■□□□□ 0.32
PRKDC-207ENST00000536483 LOC102724428A0A0B4J2F2 783 aa17.03■□□□□ 0.32
PRKDC-207ENST00000536483 SIK1P57059 783 aa17.03■□□□□ 0.32
PRKDC-207ENST00000536483 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.03■□□□□ 0.32
PRKDC-207ENST00000536483 KNSTRNQ9Y448 316 aa17.03■□□□□ 0.32
PRKDC-207ENST00000536483 TNNT2P45379 298 aaPredicted RBP17.02■□□□□ 0.32
PRKDC-207ENST00000536483 IFNL2Q8IZJ0 200 aa17.02■□□□□ 0.32
PRKDC-207ENST00000536483 LINC00116Q8NCU8 138 aa17.02■□□□□ 0.32
PRKDC-207ENST00000536483 TMOD3Q9NYL9 352 aa17.02■□□□□ 0.32
PRKDC-207ENST00000536483 ASAP1Q9ULH1 1129 aa17.02■□□□□ 0.32
PRKDC-207ENST00000536483 PLEKHG2Q9H7P9 1386 aa17.02■□□□□ 0.31
PRKDC-207ENST00000536483 MAP2P11137 1827 aaKnown RBP17.01■□□□□ 0.31
PRKDC-207ENST00000536483 PHKG2P15735 406 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms