RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CT47B1P0C2W7 299 aaPredicted RBP17.32■□□□□ 0.36
LIG1-203ENST00000536218 GTF2E1P29083 439 aaPredicted RBP17.32■□□□□ 0.36
LIG1-203ENST00000536218 MFAP1P55081 439 aaKnown RBP17.32■□□□□ 0.36
LIG1-203ENST00000536218 NAP1L2Q9ULW6 460 aaPredicted RBP17.32■□□□□ 0.36
LIG1-203ENST00000536218 KNDC1Q76NI1 1749 aa17.32■□□□□ 0.36
LIG1-203ENST00000536218 ANKLE2Q86XL3 938 aa17.31■□□□□ 0.36
LIG1-203ENST00000536218 MBIPQ9NS73 344 aa17.31■□□□□ 0.36
LIG1-203ENST00000536218 AMPHP49418 695 aa17.31■□□□□ 0.36
LIG1-203ENST00000536218 TMEM57Q8N5G2 664 aa17.31■□□□□ 0.36
LIG1-203ENST00000536218 CDK12Q9NYV4 1490 aaPredicted RBP17.31■□□□□ 0.36
LIG1-203ENST00000536218 ARHGAP23Q9P227 1491 aa17.3■□□□□ 0.36
LIG1-203ENST00000536218 HSCBQ8IWL3 235 aa17.3■□□□□ 0.36
LIG1-203ENST00000536218 GNAI1P63096 354 aa17.3■□□□□ 0.36
LIG1-203ENST00000536218 MAP3K19Q56UN5 1328 aa17.3■□□□□ 0.36
LIG1-203ENST00000536218 MCM10Q7L590 875 aa17.3■□□□□ 0.36
LIG1-203ENST00000536218 SLIT1O75093 1534 aa17.29■□□□□ 0.36
LIG1-203ENST00000536218 LTV1Q96GA3 475 aaPredicted RBP17.29■□□□□ 0.36
LIG1-203ENST00000536218 DMTNQ08495 405 aa17.28■□□□□ 0.36
LIG1-203ENST00000536218 RWDD1Q9H446 243 aaPredicted RBP17.28■□□□□ 0.36
LIG1-203ENST00000536218 VAMP4O75379 141 aa17.28■□□□□ 0.36
LIG1-203ENST00000536218 FOXD4L1Q9NU39 408 aa17.28■□□□□ 0.36
LIG1-203ENST00000536218 IPO8O15397 1037 aaKnown RBP17.28■□□□□ 0.36
LIG1-203ENST00000536218 TERF1P54274 439 aa17.28■□□□□ 0.36
LIG1-203ENST00000536218 ABTB2Q8N961 1025 aa17.28■□□□□ 0.36
LIG1-203ENST00000536218 C8orf58Q8NAV2 365 aa17.28■□□□□ 0.36
LIG1-203ENST00000536218 TNPO1Q92973 898 aaKnown RBP17.28■□□□□ 0.36
LIG1-203ENST00000536218 C22orf23Q9BZE7 217 aa17.28■□□□□ 0.36
LIG1-203ENST00000536218 NCLP19338 710 aaKnown RBP17.27■□□□□ 0.36
LIG1-203ENST00000536218 ITSN1Q15811 1721 aa17.27■□□□□ 0.36
LIG1-203ENST00000536218 MTERF4Q7Z6M4 381 aaKnown RBP17.27■□□□□ 0.36
LIG1-203ENST00000536218 PDZRN3Q9UPQ7 1066 aa17.27■□□□□ 0.36
LIG1-203ENST00000536218 LMOD3Q0VAK6 560 aa17.27■□□□□ 0.35
LIG1-203ENST00000536218 KRT24Q2M2I5 525 aa17.27■□□□□ 0.35
LIG1-203ENST00000536218 IFT57Q9NWB7 429 aa17.27■□□□□ 0.35
LIG1-203ENST00000536218 MON2Q7Z3U7 1717 aa17.27■□□□□ 0.35
LIG1-203ENST00000536218 TWISTNBQ3B726 338 aaPredicted RBP17.26■□□□□ 0.35
LIG1-203ENST00000536218 GBP4Q96PP9 640 aa17.26■□□□□ 0.35
LIG1-203ENST00000536218 FOXO3O43524 673 aa17.26■□□□□ 0.35
LIG1-203ENST00000536218 PPP4R3BQ5MIZ7 849 aa17.26■□□□□ 0.35
LIG1-203ENST00000536218 DDX19BQ9UMR2 479 aa17.26■□□□□ 0.35
LIG1-203ENST00000536218 PPP1R9BQ96SB3 815 aa17.26■□□□□ 0.35
LIG1-203ENST00000536218 MIS18AQ9NYP9 233 aa17.26■□□□□ 0.35
LIG1-203ENST00000536218 KIF16BQ96L93 1317 aa17.25■□□□□ 0.35
LIG1-203ENST00000536218 CFAP44Q96MT7 982 aa17.25■□□□□ 0.35
LIG1-203ENST00000536218 OVOS2A0A0J9YW53 1432 aa17.25■□□□□ 0.35
LIG1-203ENST00000536218 OVOS2Q6IE36 1432 aa17.25■□□□□ 0.35
LIG1-203ENST00000536218 AKAP12Q02952 1782 aa17.24■□□□□ 0.35
LIG1-203ENST00000536218 CBX1P83916 185 aa17.24■□□□□ 0.35
LIG1-203ENST00000536218 TTC21AQ8NDW8 1320 aa17.24■□□□□ 0.35
LIG1-203ENST00000536218 DYNC1I1O14576 645 aa17.24■□□□□ 0.35
LIG1-203ENST00000536218 ZSCAN20P17040 1043 aaPredicted RBP17.24■□□□□ 0.35
LIG1-203ENST00000536218 ALDH1L2Q3SY69 923 aa17.24■□□□□ 0.35
LIG1-203ENST00000536218 PTCH1Q13635 1447 aa17.23■□□□□ 0.35
LIG1-203ENST00000536218 VGLL3A8MV65 326 aa17.23■□□□□ 0.35
LIG1-203ENST00000536218 ZNF853P0CG23 659 aa17.23■□□□□ 0.35
LIG1-203ENST00000536218 SKOR2Q2VWA4 1001 aaPredicted RBP17.23■□□□□ 0.35
LIG1-203ENST00000536218 ESCO1Q5FWF5 840 aa17.23■□□□□ 0.35
LIG1-203ENST00000536218 UTP14CQ5TAP6 766 aaKnown RBP17.23■□□□□ 0.35
LIG1-203ENST00000536218 CCDC94Q9BW85 323 aaPredicted RBP17.23■□□□□ 0.35
LIG1-203ENST00000536218 C1orf115Q9H7X2 142 aa17.22■□□□□ 0.35
LIG1-203ENST00000536218 DIP2AQ14689 1571 aa17.22■□□□□ 0.35
LIG1-203ENST00000536218 HSP90AB1P08238 724 aaKnown RBP17.22■□□□□ 0.35
LIG1-203ENST00000536218 MRPL50Q8N5N7 158 aaKnown RBP17.22■□□□□ 0.35
LIG1-203ENST00000536218 EYA1Q99502 592 aa17.22■□□□□ 0.35
LIG1-203ENST00000536218 LMOD2Q6P5Q4 547 aa17.21■□□□□ 0.35
LIG1-203ENST00000536218 PHF8Q9UPP1 1060 aa17.21■□□□□ 0.35
LIG1-203ENST00000536218 RGPD8O14715 1765 aaPredicted RBP17.21■□□□□ 0.35
LIG1-203ENST00000536218 RIMS1Q86UR5 1692 aaKnown RBP17.21■□□□□ 0.35
LIG1-203ENST00000536218 AEBP2Q6ZN18 517 aaPredicted RBP17.2■□□□□ 0.34
LIG1-203ENST00000536218 SSH2Q76I76 1423 aa17.2■□□□□ 0.34
LIG1-203ENST00000536218 DDX49Q9Y6V7 483 aaKnown RBP17.2■□□□□ 0.34
LIG1-203ENST00000536218 CEP170BQ9Y4F5 1589 aaPredicted RBP17.2■□□□□ 0.34
LIG1-203ENST00000536218 MTHFSDQ2M296 383 aaKnown RBP17.2■□□□□ 0.34
LIG1-203ENST00000536218 USP31Q70CQ4 1352 aa17.2■□□□□ 0.34
LIG1-203ENST00000536218 PSME1Q06323 249 aa17.19■□□□□ 0.34
LIG1-203ENST00000536218 PLCD3Q8N3E9 789 aa17.19■□□□□ 0.34
LIG1-203ENST00000536218 RTF1Q92541 710 aaKnown RBP17.19■□□□□ 0.34
LIG1-203ENST00000536218 TSC1Q92574 1164 aa17.19■□□□□ 0.34
LIG1-203ENST00000536218 JARID2Q92833 1246 aaPredicted RBP17.19■□□□□ 0.34
LIG1-203ENST00000536218 ZBTB40Q9NUA8 1239 aa17.19■□□□□ 0.34
LIG1-203ENST00000536218 USHBP1Q8N6Y0 703 aa17.18■□□□□ 0.34
LIG1-203ENST00000536218 DNTTIP2Q5QJE6 756 aaKnown RBP17.18■□□□□ 0.34
LIG1-203ENST00000536218 FLT4P35916 1363 aa17.18■□□□□ 0.34
LIG1-203ENST00000536218 NOL7Q9UMY1 257 aaKnown RBP17.17■□□□□ 0.34
LIG1-203ENST00000536218 ZNF428Q96B54 188 aa17.17■□□□□ 0.34
LIG1-203ENST00000536218 SASS6Q6UVJ0 657 aa17.16■□□□□ 0.34
LIG1-203ENST00000536218 SBNO1A3KN83 1393 aa17.16■□□□□ 0.34
LIG1-203ENST00000536218 TOPAZ1Q8N9V7 1692 aa17.16■□□□□ 0.34
LIG1-203ENST00000536218 GOLGA6L22H0YM25 854 aa17.16■□□□□ 0.34
LIG1-203ENST00000536218 IGSF3O75054 1194 aa17.16■□□□□ 0.34
LIG1-203ENST00000536218 HOXC9P31274 260 aa17.16■□□□□ 0.34
LIG1-203ENST00000536218 CSPP1Q1MSJ5 1256 aa17.16■□□□□ 0.34
LIG1-203ENST00000536218 ZNF500O60304 480 aaPredicted RBP17.15■□□□□ 0.34
LIG1-203ENST00000536218 ORAI2Q96SN7 254 aa17.15■□□□□ 0.34
LIG1-203ENST00000536218 NRKQ7Z2Y5 1582 aa17.14■□□□□ 0.34
LIG1-203ENST00000536218 PEAK1Q9H792 1746 aa17.14■□□□□ 0.34
LIG1-203ENST00000536218 MAPK8IP2Q13387 824 aaPredicted RBP17.14■□□□□ 0.33
LIG1-203ENST00000536218 CHL1O00533 1208 aa17.14■□□□□ 0.33
LIG1-203ENST00000536218 TSPYL4Q9UJ04 414 aa17.14■□□□□ 0.33
LIG1-203ENST00000536218 PIK3R4Q99570 1358 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms