RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 CCNL1Q9UK58 526 aaPredicted RBP16.1■□□□□ 0.17
TRAPPC4-213ENST00000533149 CLSPNQ9HAW4 1339 aa16.09■□□□□ 0.17
TRAPPC4-213ENST00000533149 PRIM1P49642 420 aaKnown RBP16.09■□□□□ 0.17
TRAPPC4-213ENST00000533149 DNAJC5GQ8N7S2 189 aa16.09■□□□□ 0.17
TRAPPC4-213ENST00000533149 ANKRD36BQ8N2N9 1353 aa16.09■□□□□ 0.17
TRAPPC4-213ENST00000533149 MSL1Q68DK7 614 aa16.08■□□□□ 0.16
TRAPPC4-213ENST00000533149 KTN1Q86UP2 1357 aaKnown RBP16.08■□□□□ 0.16
TRAPPC4-213ENST00000533149 FLAD1Q8NFF5 587 aa16.07■□□□□ 0.16
TRAPPC4-213ENST00000533149 LY75O60449 1722 aa16.07■□□□□ 0.16
TRAPPC4-213ENST00000533149 USP31Q70CQ4 1352 aa16.06■□□□□ 0.16
TRAPPC4-213ENST00000533149 TOMM70O94826 608 aa16.06■□□□□ 0.16
TRAPPC4-213ENST00000533149 NSD2O96028 1365 aa16.03■□□□□ 0.16
TRAPPC4-213ENST00000533149 USP47Q96K76 1375 aa16.03■□□□□ 0.16
TRAPPC4-213ENST00000533149 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.03■□□□□ 0.16
TRAPPC4-213ENST00000533149 IGSF1Q8N6C5 1336 aa16.03■□□□□ 0.16
TRAPPC4-213ENST00000533149 COL13A1Q5TAT6 717 aaPredicted RBP16.01■□□□□ 0.15
TRAPPC4-213ENST00000533149 SIN3AQ96ST3 1273 aa16.01■□□□□ 0.15
TRAPPC4-213ENST00000533149 LTN1O94822 1766 aa16.01■□□□□ 0.15
TRAPPC4-213ENST00000533149 CAPN15O75808 1086 aa16■□□□□ 0.15
TRAPPC4-213ENST00000533149 ZCRB1Q8TBF4 217 aaKnown RBP16■□□□□ 0.15
TRAPPC4-213ENST00000533149 USP54Q70EL1 1684 aa16■□□□□ 0.15
TRAPPC4-213ENST00000533149 DOT1LQ8TEK3 1739 aa16■□□□□ 0.15
TRAPPC4-213ENST00000533149 PRELPP51888 382 aa15.99■□□□□ 0.15
TRAPPC4-213ENST00000533149 NME9Q86XW9 330 aa15.99■□□□□ 0.15
TRAPPC4-213ENST00000533149 TNS4Q8IZW8 715 aa15.99■□□□□ 0.15
TRAPPC4-213ENST00000533149 IP6K1Q92551 441 aa15.99■□□□□ 0.15
TRAPPC4-213ENST00000533149 NEUROD1Q13562 356 aa15.98■□□□□ 0.15
TRAPPC4-213ENST00000533149 JMYQ8N9B5 988 aa15.98■□□□□ 0.15
TRAPPC4-213ENST00000533149 KLRG1Q96E93 195 aa15.98■□□□□ 0.15
TRAPPC4-213ENST00000533149 FAM208AQ9UK61 1670 aaKnown RBP15.98■□□□□ 0.15
TRAPPC4-213ENST00000533149 LTV1Q96GA3 475 aaPredicted RBP15.97■□□□□ 0.15
TRAPPC4-213ENST00000533149 WWC3Q9ULE0 1092 aa15.97■□□□□ 0.15
TRAPPC4-213ENST00000533149 MON2Q7Z3U7 1717 aa15.97■□□□□ 0.15
TRAPPC4-213ENST00000533149 C5P01031 1676 aa15.96■□□□□ 0.15
TRAPPC4-213ENST00000533149 RBM46Q8TBY0 533 aaKnown RBP15.95■□□□□ 0.14
TRAPPC4-213ENST00000533149 SBNO2Q9Y2G9 1366 aa15.95■□□□□ 0.14
TRAPPC4-213ENST00000533149 CICQ96RK0 1608 aaPredicted RBP15.95■□□□□ 0.14
TRAPPC4-213ENST00000533149 AK7Q96M32 723 aa15.94■□□□□ 0.14
TRAPPC4-213ENST00000533149 WDR90Q96KV7 1748 aa15.94■□□□□ 0.14
TRAPPC4-213ENST00000533149 NSD3Q9BZ95 1437 aa15.94■□□□□ 0.14
TRAPPC4-213ENST00000533149 CGNL1Q0VF96 1302 aa15.94■□□□□ 0.14
TRAPPC4-213ENST00000533149 HDGFL2Q7Z4V5 671 aaPredicted RBP15.94■□□□□ 0.14
TRAPPC4-213ENST00000533149 C16orf71Q8IYS4 520 aaPredicted RBP15.94■□□□□ 0.14
TRAPPC4-213ENST00000533149 PALLDQ8WX93 1383 aa15.93■□□□□ 0.14
TRAPPC4-213ENST00000533149 FSTL1Q12841 308 aa15.93■□□□□ 0.14
TRAPPC4-213ENST00000533149 NMRK2Q9NPI5 230 aa15.92■□□□□ 0.14
TRAPPC4-213ENST00000533149 EDC4Q6P2E9 1401 aaKnown RBP15.91■□□□□ 0.14
TRAPPC4-213ENST00000533149 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.91■□□□□ 0.14
TRAPPC4-213ENST00000533149 SMARCC1Q92922 1105 aaPredicted RBP15.91■□□□□ 0.14
TRAPPC4-213ENST00000533149 MEGF6O75095 1541 aa15.9■□□□□ 0.14
TRAPPC4-213ENST00000533149 PHF14O94880 888 aa15.9■□□□□ 0.14
TRAPPC4-213ENST00000533149 SSFA2P28290 1259 aa15.9■□□□□ 0.14
TRAPPC4-213ENST00000533149 TMC1Q8TDI8 760 aa15.9■□□□□ 0.14
TRAPPC4-213ENST00000533149 TERF2IPQ9NYB0 399 aa15.9■□□□□ 0.14
TRAPPC4-213ENST00000533149 TIMELESSQ9UNS1 1208 aa15.9■□□□□ 0.14
TRAPPC4-213ENST00000533149 CD163L1Q9NR16 1453 aa15.9■□□□□ 0.14
TRAPPC4-213ENST00000533149 HOXC9P31274 260 aa15.89■□□□□ 0.13
TRAPPC4-213ENST00000533149 AMPHP49418 695 aa15.89■□□□□ 0.13
TRAPPC4-213ENST00000533149 TGFB2P61812 414 aa15.89■□□□□ 0.13
TRAPPC4-213ENST00000533149 HTRA3P83110 453 aa15.89■□□□□ 0.13
TRAPPC4-213ENST00000533149 TAF1LQ8IZX4 1826 aa15.89■□□□□ 0.13
TRAPPC4-213ENST00000533149 ROCK2O75116 1388 aaKnown RBP15.88■□□□□ 0.13
TRAPPC4-213ENST00000533149 C4BP0C0L5 1744 aa15.88■□□□□ 0.13
TRAPPC4-213ENST00000533149 MPRIPQ6WCQ1 1025 aa15.88■□□□□ 0.13
TRAPPC4-213ENST00000533149 ARHGAP27Q6ZUM4 889 aa15.88■□□□□ 0.13
TRAPPC4-213ENST00000533149 RAPGEF4Q8WZA2 1011 aa15.88■□□□□ 0.13
TRAPPC4-213ENST00000533149 BCS1LQ9Y276 419 aa15.88■□□□□ 0.13
TRAPPC4-213ENST00000533149 AMIGO3Q86WK7 504 aa15.87■□□□□ 0.13
TRAPPC4-213ENST00000533149 MAP3K19Q56UN5 1328 aa15.86■□□□□ 0.13
TRAPPC4-213ENST00000533149 PCDH11XQ9BZA7 1347 aa15.86■□□□□ 0.13
TRAPPC4-213ENST00000533149 PCDH11YQ9BZA8 1340 aa15.86■□□□□ 0.13
TRAPPC4-213ENST00000533149 SLC12A5Q9H2X9 1139 aa15.86■□□□□ 0.13
TRAPPC4-213ENST00000533149 PLEKHG2Q9H7P9 1386 aa15.86■□□□□ 0.13
TRAPPC4-213ENST00000533149 PXDNLA1KZ92 1463 aa15.85■□□□□ 0.13
TRAPPC4-213ENST00000533149 KDM2BQ8NHM5 1336 aa15.85■□□□□ 0.13
TRAPPC4-213ENST00000533149 TATP17735 454 aaPredicted RBP15.85■□□□□ 0.13
TRAPPC4-213ENST00000533149 L3MBTL2Q969R5 705 aa15.85■□□□□ 0.13
TRAPPC4-213ENST00000533149 COG3Q96JB2 828 aa15.85■□□□□ 0.13
TRAPPC4-213ENST00000533149 UBR3Q6ZT12 1888 aa15.84■□□□□ 0.13
TRAPPC4-213ENST00000533149 TOGARAM1Q9Y4F4 1720 aa15.84■□□□□ 0.13
TRAPPC4-213ENST00000533149 MMP10P09238 476 aa15.84■□□□□ 0.13
TRAPPC4-213ENST00000533149 NBPF6Q5VWK0 638 aa15.84■□□□□ 0.13
TRAPPC4-213ENST00000533149 NBPF4Q96M43 638 aa15.84■□□□□ 0.13
TRAPPC4-213ENST00000533149 A0A0G2JLW4 131 aa15.83■□□□□ 0.12
TRAPPC4-213ENST00000533149 C9orf131Q5VYM1 1079 aa15.83■□□□□ 0.12
TRAPPC4-213ENST00000533149 SMIM5Q71RC9 77 aa15.83■□□□□ 0.12
TRAPPC4-213ENST00000533149 A0A1W2PP64 1363 aa15.83■□□□□ 0.12
TRAPPC4-213ENST00000533149 RTL1A6NKG5 1358 aa15.82■□□□□ 0.12
TRAPPC4-213ENST00000533149 TONSLQ96HA7 1378 aa15.82■□□□□ 0.12
TRAPPC4-213ENST00000533149 FCHSD2O94868 740 aa15.82■□□□□ 0.12
TRAPPC4-213ENST00000533149 SMC1BQ8NDV3 1235 aa15.82■□□□□ 0.12
TRAPPC4-213ENST00000533149 SMG6Q86US8 1419 aaKnown RBP15.82■□□□□ 0.12
TRAPPC4-213ENST00000533149 RGPD2P0DJD1 1756 aa15.81■□□□□ 0.12
TRAPPC4-213ENST00000533149 C10orf71Q711Q0 1435 aa15.81■□□□□ 0.12
TRAPPC4-213ENST00000533149 KIF13BQ9NQT8 1826 aa15.81■□□□□ 0.12
TRAPPC4-213ENST00000533149 LOC102724428A0A0B4J2F2 783 aa15.8■□□□□ 0.12
TRAPPC4-213ENST00000533149 GNPATO15228 680 aa15.8■□□□□ 0.12
TRAPPC4-213ENST00000533149 SIK1P57059 783 aa15.8■□□□□ 0.12
TRAPPC4-213ENST00000533149 NLGN1Q8N2Q7 840 aa15.8■□□□□ 0.12
TRAPPC4-213ENST00000533149 USHBP1Q8N6Y0 703 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms