RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	PER1	O15534	1290 aa	Predicted RBP	31.39	■■■□□ 2.62
CAPN1-222	ENST00000532285	DDX54	Q8TDD1	881 aa	Known RBP	31.39	■■■□□ 2.62
CAPN1-222	ENST00000532285	PTF1A	Q7RTS3	328 aa		31.38	■■■□□ 2.61
CAPN1-222	ENST00000532285	NUP188	Q5SRE5	1749 aa		31.38	■■■□□ 2.61
CAPN1-222	ENST00000532285	TAT	P17735	454 aa	Predicted RBP	31.36	■■■□□ 2.61
CAPN1-222	ENST00000532285	NCAPD2	Q15021	1401 aa		31.34	■■■□□ 2.61
CAPN1-222	ENST00000532285	KCNQ2	O43526	872 aa		31.34	■■■□□ 2.61
CAPN1-222	ENST00000532285	ACSBG1	Q96GR2	724 aa		31.34	■■■□□ 2.61
CAPN1-222	ENST00000532285	EIF4A2	Q14240	407 aa	Known RBP	31.32	■■■□□ 2.6
CAPN1-222	ENST00000532285	EYA1	Q99502	592 aa		31.32	■■■□□ 2.6
CAPN1-222	ENST00000532285	BTAF1	O14981	1849 aa		31.31	■■■□□ 2.6
CAPN1-222	ENST00000532285	PSD	A5PKW4	1024 aa	Predicted RBP	31.28	■■■□□ 2.6
CAPN1-222	ENST00000532285	NBPF14	Q5TI25	921 aa		31.28	■■■□□ 2.6
CAPN1-222	ENST00000532285	PKD1L3	Q7Z443	1732 aa		31.28	■■■□□ 2.6
CAPN1-222	ENST00000532285	DOT1L	Q8TEK3	1739 aa		31.28	■■■□□ 2.6
CAPN1-222	ENST00000532285	NPC1L1	Q9UHC9	1359 aa		31.27	■■■□□ 2.6
CAPN1-222	ENST00000532285	R3HDM1	Q15032	1099 aa	Known RBP	31.26	■■■□□ 2.59
CAPN1-222	ENST00000532285	CC2D1B	Q5T0F9	858 aa	Known RBP	31.26	■■■□□ 2.59
CAPN1-222	ENST00000532285	PCDH11X	Q9BZA7	1347 aa		31.25	■■■□□ 2.59
CAPN1-222	ENST00000532285	PCDH11Y	Q9BZA8	1340 aa		31.25	■■■□□ 2.59
CAPN1-222	ENST00000532285	PROM2	Q8N271	834 aa		31.23	■■■□□ 2.59
CAPN1-222	ENST00000532285	IGSF1	Q8N6C5	1336 aa		31.22	■■■□□ 2.59
CAPN1-222	ENST00000532285	SRCAP	Q6ZRS2	3230 aa		31.21	■■■□□ 2.59
CAPN1-222	ENST00000532285	TXNRD1	Q16881	649 aa		31.21	■■■□□ 2.59
CAPN1-222	ENST00000532285	SPG7	Q9UQ90	795 aa		31.21	■■■□□ 2.59
CAPN1-222	ENST00000532285	PRIM1	P49642	420 aa	Known RBP	31.2	■■■□□ 2.59
CAPN1-222	ENST00000532285	SYTL4	Q96C24	671 aa	Predicted RBP	31.19	■■■□□ 2.58
CAPN1-222	ENST00000532285	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	31.19	■■■□□ 2.58	2e-6	■■□□□ 11.9
CAPN1-222	ENST00000532285	CYP27B1	O15528	508 aa		31.18	■■■□□ 2.58
CAPN1-222	ENST00000532285	MTHFS	P49914	203 aa		31.18	■■■□□ 2.58
CAPN1-222	ENST00000532285	PLEKHG2	Q9H7P9	1386 aa		31.17	■■■□□ 2.58
CAPN1-222	ENST00000532285	CNGB1	Q14028	1251 aa	Predicted RBP	31.14	■■■□□ 2.58
CAPN1-222	ENST00000532285	LRP5	O75197	1615 aa		31.13	■■■□□ 2.57
CAPN1-222	ENST00000532285	ITGB4	P16144	1822 aa		31.13	■■■□□ 2.57
CAPN1-222	ENST00000532285	IL13	P35225	146 aa		31.13	■■■□□ 2.57
CAPN1-222	ENST00000532285	NKX1-1	Q15270	411 aa	Predicted RBP	31.11	■■■□□ 2.57
CAPN1-222	ENST00000532285	LY75	O60449	1722 aa		31.1	■■■□□ 2.57
CAPN1-222	ENST00000532285	TOGARAM1	Q9Y4F4	1720 aa		31.1	■■■□□ 2.57
CAPN1-222	ENST00000532285	IFNL2	Q8IZJ0	200 aa		31.09	■■■□□ 2.57
CAPN1-222	ENST00000532285	ANO8	Q9HCE9	1232 aa	Predicted RBP	31.09	■■■□□ 2.57
CAPN1-222	ENST00000532285	SULT6B1	Q6IMI4	303 aa		31.07	■■■□□ 2.56
CAPN1-222	ENST00000532285	STK32B	Q9NY57	414 aa		31.07	■■■□□ 2.56
CAPN1-222	ENST00000532285	PHKG2	P15735	406 aa		31.06	■■■□□ 2.56
CAPN1-222	ENST00000532285	PLEKHO1	Q53GL0	409 aa	Predicted RBP	31.06	■■■□□ 2.56
CAPN1-222	ENST00000532285	SLC27A3	Q5K4L6	730 aa		31.06	■■■□□ 2.56
CAPN1-222	ENST00000532285	AEBP1	Q8IUX7	1158 aa		31.06	■■■□□ 2.56
CAPN1-222	ENST00000532285	KDR	P35968	1356 aa		31.05	■■■□□ 2.56
CAPN1-222	ENST00000532285	DIAPH1	O60610	1272 aa	Known RBP	31.05	■■■□□ 2.56
CAPN1-222	ENST00000532285	AMOT	Q4VCS5	1084 aa		31.05	■■■□□ 2.56
CAPN1-222	ENST00000532285	PAPPA	Q13219	1627 aa		31.05	■■■□□ 2.56
CAPN1-222	ENST00000532285	LRRC4B	Q9NT99	713 aa		31.04	■■■□□ 2.56
CAPN1-222	ENST00000532285	SLC15A2	Q16348	729 aa		31.03	■■■□□ 2.56
CAPN1-222	ENST00000532285	MPRIP	Q6WCQ1	1025 aa		31.03	■■■□□ 2.56
CAPN1-222	ENST00000532285	CASZ1	Q86V15	1759 aa		31.01	■■■□□ 2.55
CAPN1-222	ENST00000532285	HSP90AB1	P08238	724 aa	Known RBP	30.99	■■■□□ 2.55
CAPN1-222	ENST00000532285	COL3A1	P02461	1466 aa	Predicted RBP	30.99	■■■□□ 2.55
CAPN1-222	ENST00000532285	ZNF530	Q6P9A1	599 aa	Predicted RBP	30.98	■■■□□ 2.55
CAPN1-222	ENST00000532285	PIGB	Q92521	554 aa		30.97	■■■□□ 2.55
CAPN1-222	ENST00000532285	SMARCC1	Q92922	1105 aa	Predicted RBP	30.96	■■■□□ 2.55
CAPN1-222	ENST00000532285	CCNL1	Q9UK58	526 aa	Predicted RBP	30.96	■■■□□ 2.55
CAPN1-222	ENST00000532285	DCAF5	Q96JK2	942 aa		30.95	■■■□□ 2.55
CAPN1-222	ENST00000532285	CFAP53	Q96M91	514 aa		30.95	■■■□□ 2.55
CAPN1-222	ENST00000532285	TMOD3	Q9NYL9	352 aa		30.95	■■■□□ 2.55
CAPN1-222	ENST00000532285	HMOX1	P09601	288 aa		30.94	■■■□□ 2.54
CAPN1-222	ENST00000532285	ZEB1	P37275	1124 aa	Predicted RBP	30.94	■■■□□ 2.54
CAPN1-222	ENST00000532285	KCNQ4	P56696	695 aa		30.94	■■■□□ 2.54
CAPN1-222	ENST00000532285	QSER1	Q2KHR3	1735 aa		30.94	■■■□□ 2.54
CAPN1-222	ENST00000532285	C1orf141	Q5JVX7	400 aa		30.94	■■■□□ 2.54
CAPN1-222	ENST00000532285	PALLD	Q8WX93	1383 aa		30.93	■■■□□ 2.54
CAPN1-222	ENST00000532285	PPP2R1A	P30153	589 aa		30.93	■■■□□ 2.54
CAPN1-222	ENST00000532285	TAF1L	Q8IZX4	1826 aa		30.92	■■■□□ 2.54
CAPN1-222	ENST00000532285	ERVV-2	B6SEH9	535 aa		30.92	■■■□□ 2.54
CAPN1-222	ENST00000532285	HMGB2	P26583	209 aa	Known RBP	30.92	■■■□□ 2.54
CAPN1-222	ENST00000532285	ZNF827	Q17R98	1081 aa		30.92	■■■□□ 2.54
CAPN1-222	ENST00000532285	AKT1S1	Q96B36	256 aa		30.92	■■■□□ 2.54
CAPN1-222	ENST00000532285	SPON1	Q9HCB6	807 aa		30.92	■■■□□ 2.54
CAPN1-222	ENST00000532285	C5	P01031	1676 aa		30.91	■■■□□ 2.54
CAPN1-222	ENST00000532285	PDGFD	Q9GZP0	370 aa	Predicted RBP	30.91	■■■□□ 2.54
CAPN1-222	ENST00000532285	U2SURP	O15042	1029 aa	Known RBP	30.9	■■■□□ 2.54
CAPN1-222	ENST00000532285	SCN11A	Q9UI33	1791 aa		30.89	■■■□□ 2.54
CAPN1-222	ENST00000532285	TUBGCP6	Q96RT7	1819 aa		30.89	■■■□□ 2.53
CAPN1-222	ENST00000532285	VIRMA	Q69YN4	1812 aa	Known RBP	30.88	■■■□□ 2.53
CAPN1-222	ENST00000532285	KDM6A	O15550	1401 aa	Predicted RBP	30.88	■■■□□ 2.53
CAPN1-222	ENST00000532285	AKAP4	Q5JQC9	854 aa		30.86	■■■□□ 2.53
CAPN1-222	ENST00000532285	TFCP2L1	Q9NZI6	479 aa		30.85	■■■□□ 2.53
CAPN1-222	ENST00000532285	ASAP1	Q9ULH1	1129 aa		30.85	■■■□□ 2.53
CAPN1-222	ENST00000532285	ZBTB7A	O95365	584 aa		30.84	■■■□□ 2.53
CAPN1-222	ENST00000532285	CABP4	P57796	275 aa		30.84	■■■□□ 2.53
CAPN1-222	ENST00000532285	NUDC	Q9Y266	331 aa		30.84	■■■□□ 2.53
CAPN1-222	ENST00000532285	DDX10	Q13206	875 aa	Known RBP	30.83	■■■□□ 2.53
CAPN1-222	ENST00000532285	ATG3	Q9NT62	314 aa		30.82	■■■□□ 2.52
CAPN1-222	ENST00000532285	MTHFSD	Q2M296	383 aa	Known RBP	30.81	■■■□□ 2.52
CAPN1-222	ENST00000532285	MTFR1L	Q9H019	292 aa		30.81	■■■□□ 2.52
CAPN1-222	ENST00000532285	LOC102724428	A0A0B4J2F2	783 aa		30.8	■■■□□ 2.52
CAPN1-222	ENST00000532285	SIK1	P57059	783 aa		30.8	■■■□□ 2.52
CAPN1-222	ENST00000532285	C4B	P0C0L5	1744 aa		30.79	■■■□□ 2.52
CAPN1-222	ENST00000532285	PPP1R1B	Q9UD71	204 aa	Predicted RBP	30.79	■■■□□ 2.52
CAPN1-222	ENST00000532285	ATF5	Q9Y2D1	282 aa	Predicted RBP	30.79	■■■□□ 2.52
CAPN1-222	ENST00000532285	PNPLA7	Q6ZV29	1317 aa		30.78	■■■□□ 2.52
CAPN1-222	ENST00000532285	ZNF831	Q5JPB2	1677 aa		30.78	■■■□□ 2.52

Retrieved 100 of 20,778 RNA–protein pairs in 130 ms