RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 FLT4P35916 1363 aa23.38■■□□□ 1.33
CPSF1-207ENST00000531727 ZBTB7AO95365 584 aa23.37■■□□□ 1.33
CPSF1-207ENST00000531727 CGNL1Q0VF96 1302 aa23.36■■□□□ 1.33
CPSF1-207ENST00000531727 HSP90AB2PQ58FF8 381 aa23.36■■□□□ 1.33
CPSF1-207ENST00000531727 USHBP1Q8N6Y0 703 aa23.36■■□□□ 1.33
CPSF1-207ENST00000531727 LRRC4BQ9NT99 713 aa23.35■■□□□ 1.33
CPSF1-207ENST00000531727 ANKRD26Q9UPS8 1709 aa23.34■■□□□ 1.33
CPSF1-207ENST00000531727 PTGER2P43116 358 aa23.34■■□□□ 1.33
CPSF1-207ENST00000531727 RAPGEF4Q8WZA2 1011 aa23.34■■□□□ 1.33
CPSF1-207ENST00000531727 NSD2O96028 1365 aa23.33■■□□□ 1.33
CPSF1-207ENST00000531727 PRIM1P49642 420 aaKnown RBP23.33■■□□□ 1.33
CPSF1-207ENST00000531727 SLC27A3Q5K4L6 730 aa23.33■■□□□ 1.33
CPSF1-207ENST00000531727 SYTL4Q96C24 671 aaPredicted RBP23.33■■□□□ 1.33
CPSF1-207ENST00000531727 MTFR1LQ9H019 292 aa23.32■■□□□ 1.32
CPSF1-207ENST00000531727 ATF5Q9Y2D1 282 aaPredicted RBP23.32■■□□□ 1.32
CPSF1-207ENST00000531727 EMILIN1Q9Y6C2 1016 aa23.32■■□□□ 1.32
CPSF1-207ENST00000531727 LY75O60449 1722 aa23.32■■□□□ 1.32
CPSF1-207ENST00000531727 TATP17735 454 aaPredicted RBP23.31■■□□□ 1.32
CPSF1-207ENST00000531727 ZNF827Q17R98 1081 aa23.31■■□□□ 1.32
CPSF1-207ENST00000531727 QSER1Q2KHR3 1735 aa23.3■■□□□ 1.32
CPSF1-207ENST00000531727 EIF4G2P78344 907 aaKnown RBP eCLIP23.28■■□□□ 1.32
CPSF1-207ENST00000531727 AKT1S1Q96B36 256 aa23.28■■□□□ 1.32
CPSF1-207ENST00000531727 POLR3GLQ9BT43 218 aa23.28■■□□□ 1.32
CPSF1-207ENST00000531727 MAP2P11137 1827 aaKnown RBP23.28■■□□□ 1.32
CPSF1-207ENST00000531727 CCER1Q8TC90 406 aaPredicted RBP23.27■■□□□ 1.32
CPSF1-207ENST00000531727 SGIP1Q9BQI5 828 aa23.27■■□□□ 1.32
CPSF1-207ENST00000531727 PCDH11XQ9BZA7 1347 aa23.27■■□□□ 1.32
CPSF1-207ENST00000531727 PCDH11YQ9BZA8 1340 aa23.27■■□□□ 1.32
CPSF1-207ENST00000531727 NCAPD2Q15021 1401 aa23.26■■□□□ 1.31
CPSF1-207ENST00000531727 PKD1L3Q7Z443 1732 aa23.26■■□□□ 1.31
CPSF1-207ENST00000531727 TUBGCP6Q96RT7 1819 aa23.25■■□□□ 1.31
CPSF1-207ENST00000531727 DCAF8L1A6NGE4 600 aa23.25■■□□□ 1.31
CPSF1-207ENST00000531727 PPM1GO15355 546 aaPredicted RBP23.25■■□□□ 1.31
CPSF1-207ENST00000531727 HSPA5P11021 654 aaKnown RBP23.25■■□□□ 1.31
CPSF1-207ENST00000531727 WASHC2AQ641Q2 1341 aa23.25■■□□□ 1.31
CPSF1-207ENST00000531727 KCNQ4P56696 695 aa23.23■■□□□ 1.31
CPSF1-207ENST00000531727 POLKQ9UBT6 870 aa23.22■■□□□ 1.31
CPSF1-207ENST00000531727 CYP27B1O15528 508 aa23.21■■□□□ 1.31
CPSF1-207ENST00000531727 FHDC1Q9C0D6 1143 aaPredicted RBP23.21■■□□□ 1.31
CPSF1-207ENST00000531727 CCNL1Q9UK58 526 aaPredicted RBP23.21■■□□□ 1.31
CPSF1-207ENST00000531727 TOGARAM1Q9Y4F4 1720 aa23.21■■□□□ 1.31
CPSF1-207ENST00000531727 COL24A1Q17RW2 1714 aa23.2■■□□□ 1.3
CPSF1-207ENST00000531727 PNPLA7Q6ZV29 1317 aa23.2■■□□□ 1.3
CPSF1-207ENST00000531727 SLC16A10Q8TF71 515 aa23.2■■□□□ 1.3
CPSF1-207ENST00000531727 ARXQ96QS3 562 aa23.19■■□□□ 1.3
CPSF1-207ENST00000531727 SYT17Q9BSW7 474 aa23.19■■□□□ 1.3
CPSF1-207ENST00000531727 TFCP2L1Q9NZI6 479 aa23.19■■□□□ 1.3
CPSF1-207ENST00000531727 ITGB4P16144 1822 aa23.19■■□□□ 1.3
CPSF1-207ENST00000531727 YY1P25490 414 aa23.18■■□□□ 1.3
CPSF1-207ENST00000531727 EYA1Q99502 592 aa23.18■■□□□ 1.3
CPSF1-207ENST00000531727 C5P01031 1676 aa23.17■■□□□ 1.3
CPSF1-207ENST00000531727 PANK3Q9H999 370 aa23.17■■□□□ 1.3
CPSF1-207ENST00000531727 TNNT2P45379 298 aaPredicted RBP23.16■■□□□ 1.3
CPSF1-207ENST00000531727 SPG7Q9UQ90 795 aa23.16■■□□□ 1.3
CPSF1-207ENST00000531727 MAP3K5Q99683 1374 aa23.15■■□□□ 1.3
CPSF1-207ENST00000531727 MPRIPQ6WCQ1 1025 aa23.15■■□□□ 1.3
CPSF1-207ENST00000531727 PALLDQ8WX93 1383 aa23.14■■□□□ 1.3
CPSF1-207ENST00000531727 NKX1-1Q15270 411 aaPredicted RBP23.14■■□□□ 1.29
CPSF1-207ENST00000531727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.14■■□□□ 1.29
CPSF1-207ENST00000531727 TAF1LQ8IZX4 1826 aa23.14■■□□□ 1.29
CPSF1-207ENST00000531727 EIF4A2Q14240 407 aaKnown RBP23.13■■□□□ 1.29
CPSF1-207ENST00000531727 POLD1P28340 1107 aa23.11■■□□□ 1.29
CPSF1-207ENST00000531727 HMGB2P26583 209 aaKnown RBP23.1■■□□□ 1.29
CPSF1-207ENST00000531727 SMARCC1Q92922 1105 aaPredicted RBP23.1■■□□□ 1.29
CPSF1-207ENST00000531727 PLEKHG2Q9H7P9 1386 aa23.1■■□□□ 1.29
CPSF1-207ENST00000531727 PIGBQ92521 554 aa23.09■■□□□ 1.29
CPSF1-207ENST00000531727 COL23A1Q86Y22 540 aaPredicted RBP23.08■■□□□ 1.29
CPSF1-207ENST00000531727 C4BP0C0L5 1744 aa23.08■■□□□ 1.28
CPSF1-207ENST00000531727 IGSF1Q8N6C5 1336 aa23.08■■□□□ 1.28
CPSF1-207ENST00000531727 MSH5O43196 834 aa23.07■■□□□ 1.28
CPSF1-207ENST00000531727 PHKG2P15735 406 aa23.07■■□□□ 1.28
CPSF1-207ENST00000531727 IFNL2Q8IZJ0 200 aa23.07■■□□□ 1.28
CPSF1-207ENST00000531727 MORC1Q86VD1 984 aa23.06■■□□□ 1.28
CPSF1-207ENST00000531727 FLAD1Q8NFF5 587 aa23.04■■□□□ 1.28
CPSF1-207ENST00000531727 TMOD3Q9NYL9 352 aa23.04■■□□□ 1.28
CPSF1-207ENST00000531727 KNSTRNQ9Y448 316 aa23.04■■□□□ 1.28
CPSF1-207ENST00000531727 KLHL34Q8N239 644 aa23.03■■□□□ 1.28
CPSF1-207ENST00000531727 UBR3Q6ZT12 1888 aa23.01■■□□□ 1.27
CPSF1-207ENST00000531727 AK7Q96M32 723 aa23.01■■□□□ 1.27
CPSF1-207ENST00000531727 KIF7Q2M1P5 1343 aa23.01■■□□□ 1.27
CPSF1-207ENST00000531727 CHD4Q14839 1912 aa23■■□□□ 1.27
CPSF1-207ENST00000531727 LOC102724428A0A0B4J2F2 783 aa23■■□□□ 1.27
CPSF1-207ENST00000531727 SIK1P57059 783 aa23■■□□□ 1.27
CPSF1-207ENST00000531727 MSL1Q68DK7 614 aa23■■□□□ 1.27
CPSF1-207ENST00000531727 ASAP1Q9ULH1 1129 aa23■■□□□ 1.27
CPSF1-207ENST00000531727 PLEKHO1Q53GL0 409 aaPredicted RBP22.98■■□□□ 1.27
CPSF1-207ENST00000531727 AMER1Q5JTC6 1135 aaPredicted RBP22.98■■□□□ 1.27
CPSF1-207ENST00000531727 UTRNP46939 3433 aa22.98■■□□□ 1.27
CPSF1-207ENST00000531727 HSP90AB1P08238 724 aaKnown RBP22.97■■□□□ 1.27
CPSF1-207ENST00000531727 GPR162Q16538 588 aa22.97■■□□□ 1.27
CPSF1-207ENST00000531727 NLGN2Q8NFZ4 835 aa22.97■■□□□ 1.27
CPSF1-207ENST00000531727 ATG3Q9NT62 314 aa22.97■■□□□ 1.27
CPSF1-207ENST00000531727 ERVV-2B6SEH9 535 aa22.96■■□□□ 1.27
CPSF1-207ENST00000531727 AMOTQ4VCS5 1084 aa22.96■■□□□ 1.27
CPSF1-207ENST00000531727 AMIGO3Q86WK7 504 aa22.96■■□□□ 1.27
CPSF1-207ENST00000531727 LINC00116Q8NCU8 138 aa22.96■■□□□ 1.27
CPSF1-207ENST00000531727 ITPK1Q13572 414 aa22.95■■□□□ 1.26
CPSF1-207ENST00000531727 ZNF831Q5JPB2 1677 aa22.95■■□□□ 1.26
CPSF1-207ENST00000531727 ZNF530Q6P9A1 599 aaPredicted RBP22.95■■□□□ 1.26
CPSF1-207ENST00000531727 AEBP1Q8IUX7 1158 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms