RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 CCER1Q8TC90 406 aaPredicted RBP18.01■□□□□ 0.47
CPSF1-204ENST00000529288 MTFR1LQ9H019 292 aa18.01■□□□□ 0.47
CPSF1-204ENST00000529288 MEGF6O75095 1541 aa18■□□□□ 0.47
CPSF1-204ENST00000529288 PTGER2P43116 358 aa18■□□□□ 0.47
CPSF1-204ENST00000529288 EMILIN1Q9Y6C2 1016 aa18■□□□□ 0.47
CPSF1-204ENST00000529288 YY1P25490 414 aa17.99■□□□□ 0.47
CPSF1-204ENST00000529288 CLSPNQ9HAW4 1339 aa17.98■□□□□ 0.47
CPSF1-204ENST00000529288 SLC27A3Q5K4L6 730 aa17.98■□□□□ 0.47
CPSF1-204ENST00000529288 INSRP06213 1382 aa17.98■□□□□ 0.47
CPSF1-204ENST00000529288 FLT4P35916 1363 aa17.98■□□□□ 0.47
CPSF1-204ENST00000529288 CASZ1Q86V15 1759 aa17.97■□□□□ 0.47
CPSF1-204ENST00000529288 FAM208AQ9UK61 1670 aaKnown RBP17.97■□□□□ 0.47
CPSF1-204ENST00000529288 TNNT2P45379 298 aaPredicted RBP17.97■□□□□ 0.47
CPSF1-204ENST00000529288 FHDC1Q9C0D6 1143 aaPredicted RBP17.97■□□□□ 0.47
CPSF1-204ENST00000529288 TFCP2L1Q9NZI6 479 aa17.97■□□□□ 0.47
CPSF1-204ENST00000529288 BTAF1O14981 1849 aa17.96■□□□□ 0.47
CPSF1-204ENST00000529288 KLHL34Q8N239 644 aa17.96■□□□□ 0.47
CPSF1-204ENST00000529288 CCNL1Q9UK58 526 aaPredicted RBP17.96■□□□□ 0.47
CPSF1-204ENST00000529288 CGNL1Q0VF96 1302 aa17.96■□□□□ 0.46
CPSF1-204ENST00000529288 MSH5O43196 834 aa17.95■□□□□ 0.46
CPSF1-204ENST00000529288 EIF4G2P78344 907 aaKnown RBP eCLIP17.95■□□□□ 0.46
CPSF1-204ENST00000529288 AKT1S1Q96B36 256 aa17.95■□□□□ 0.46
CPSF1-204ENST00000529288 ARXQ96QS3 562 aa17.95■□□□□ 0.46
CPSF1-204ENST00000529288 KAT6BQ8WYB5 2073 aa17.95■□□□□ 0.46
CPSF1-204ENST00000529288 HSPA5P11021 654 aaKnown RBP17.94■□□□□ 0.46
CPSF1-204ENST00000529288 SYT17Q9BSW7 474 aa17.94■□□□□ 0.46
CPSF1-204ENST00000529288 RGPD2P0DJD1 1756 aa17.94■□□□□ 0.46
CPSF1-204ENST00000529288 MPRIPQ6WCQ1 1025 aa17.93■□□□□ 0.46
CPSF1-204ENST00000529288 PCDH11XQ9BZA7 1347 aa17.93■□□□□ 0.46
CPSF1-204ENST00000529288 PCDH11YQ9BZA8 1340 aa17.93■□□□□ 0.46
CPSF1-204ENST00000529288 NSD2O96028 1365 aa17.92■□□□□ 0.46
CPSF1-204ENST00000529288 KIF24Q5T7B8 1368 aa17.92■□□□□ 0.46
CPSF1-204ENST00000529288 KIF20BQ96Q89 1820 aa17.91■□□□□ 0.46
CPSF1-204ENST00000529288 POLD1P28340 1107 aa17.91■□□□□ 0.46
CPSF1-204ENST00000529288 SGIP1Q9BQI5 828 aa17.91■□□□□ 0.46
CPSF1-204ENST00000529288 PNPLA7Q6ZV29 1317 aa17.91■□□□□ 0.46
CPSF1-204ENST00000529288 MYOM1P52179 1685 aa17.9■□□□□ 0.46
CPSF1-204ENST00000529288 CYP27B1O15528 508 aa17.9■□□□□ 0.46
CPSF1-204ENST00000529288 PANK3Q9H999 370 aa17.9■□□□□ 0.46
CPSF1-204ENST00000529288 POLKQ9UBT6 870 aa17.9■□□□□ 0.46
CPSF1-204ENST00000529288 DOT1LQ8TEK3 1739 aa17.89■□□□□ 0.46
CPSF1-204ENST00000529288 SLC16A10Q8TF71 515 aa17.89■□□□□ 0.45
CPSF1-204ENST00000529288 EYA1Q99502 592 aa17.89■□□□□ 0.45
CPSF1-204ENST00000529288 SPG7Q9UQ90 795 aa17.89■□□□□ 0.45
CPSF1-204ENST00000529288 PAPPAQ13219 1627 aa17.89■□□□□ 0.45
CPSF1-204ENST00000529288 WASHC2AQ641Q2 1341 aa17.89■□□□□ 0.45
CPSF1-204ENST00000529288 PELP1Q8IZL8 1130 aaKnown RBP17.87■□□□□ 0.45
CPSF1-204ENST00000529288 MSL1Q68DK7 614 aa17.85■□□□□ 0.45
CPSF1-204ENST00000529288 COL23A1Q86Y22 540 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-204ENST00000529288 PALLDQ8WX93 1383 aa17.85■□□□□ 0.45
CPSF1-204ENST00000529288 SHANK3Q9BYB0 1731 aa17.85■□□□□ 0.45
CPSF1-204ENST00000529288 EIF4A2Q14240 407 aaKnown RBP17.84■□□□□ 0.45
CPSF1-204ENST00000529288 GPR162Q16538 588 aa17.84■□□□□ 0.45
CPSF1-204ENST00000529288 SMARCC1Q92922 1105 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-204ENST00000529288 MORC1Q86VD1 984 aa17.83■□□□□ 0.44
CPSF1-204ENST00000529288 PIGBQ92521 554 aa17.83■□□□□ 0.44
CPSF1-204ENST00000529288 TMOD3Q9NYL9 352 aa17.82■□□□□ 0.44
CPSF1-204ENST00000529288 IFNL2Q8IZJ0 200 aa17.81■□□□□ 0.44
CPSF1-204ENST00000529288 AK7Q96M32 723 aa17.81■□□□□ 0.44
CPSF1-204ENST00000529288 PHF14O94880 888 aa17.8■□□□□ 0.44
CPSF1-204ENST00000529288 PHKG2P15735 406 aa17.8■□□□□ 0.44
CPSF1-204ENST00000529288 NKX1-1Q15270 411 aaPredicted RBP17.8■□□□□ 0.44
CPSF1-204ENST00000529288 HMGB2P26583 209 aaKnown RBP17.79■□□□□ 0.44
CPSF1-204ENST00000529288 SMIM5Q71RC9 77 aa17.79■□□□□ 0.44
CPSF1-204ENST00000529288 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.79■□□□□ 0.44
CPSF1-204ENST00000529288 KNSTRNQ9Y448 316 aa17.79■□□□□ 0.44
CPSF1-204ENST00000529288 FLAD1Q8NFF5 587 aa17.78■□□□□ 0.44
CPSF1-204ENST00000529288 NLGN2Q8NFZ4 835 aa17.78■□□□□ 0.44
CPSF1-204ENST00000529288 ASAP1Q9ULH1 1129 aa17.78■□□□□ 0.44
CPSF1-204ENST00000529288 LY75O60449 1722 aa17.78■□□□□ 0.44
CPSF1-204ENST00000529288 NCAPD2Q15021 1401 aa17.77■□□□□ 0.44
CPSF1-204ENST00000529288 MAP3K5Q99683 1374 aa17.77■□□□□ 0.43
CPSF1-204ENST00000529288 LOC102724428A0A0B4J2F2 783 aa17.76■□□□□ 0.43
CPSF1-204ENST00000529288 SIK1P57059 783 aa17.76■□□□□ 0.43
CPSF1-204ENST00000529288 PLEKHO1Q53GL0 409 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-204ENST00000529288 ATP6V1AP38606 617 aa17.75■□□□□ 0.43
CPSF1-204ENST00000529288 MAP2P11137 1827 aaKnown RBP17.75■□□□□ 0.43
CPSF1-204ENST00000529288 IGSF1Q8N6C5 1336 aa17.74■□□□□ 0.43
CPSF1-204ENST00000529288 CNGB1Q14028 1251 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-204ENST00000529288 ZNF530Q6P9A1 599 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-204ENST00000529288 LINC00116Q8NCU8 138 aa17.74■□□□□ 0.43
CPSF1-204ENST00000529288 ATG3Q9NT62 314 aa17.74■□□□□ 0.43
CPSF1-204ENST00000529288 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.73■□□□□ 0.43
CPSF1-204ENST00000529288 AMIGO3Q86WK7 504 aa17.73■□□□□ 0.43
CPSF1-204ENST00000529288 AEBP1Q8IUX7 1158 aa17.73■□□□□ 0.43
CPSF1-204ENST00000529288 ZNF784Q8NCA9 323 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-204ENST00000529288 RBM42Q9BTD8 480 aaKnown RBP17.73■□□□□ 0.43
CPSF1-204ENST00000529288 PKD1L3Q7Z443 1732 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 TOGARAM1Q9Y4F4 1720 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 GNPATO15228 680 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 HSP90AB1P08238 724 aaKnown RBP17.72■□□□□ 0.43
CPSF1-204ENST00000529288 ITPK1Q13572 414 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 SULT6B1Q6IMI4 303 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 TUBGCP6Q96RT7 1819 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 QSER1Q2KHR3 1735 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 ANKRD26Q9UPS8 1709 aa17.72■□□□□ 0.43
CPSF1-204ENST00000529288 CABP4P57796 275 aa17.71■□□□□ 0.43
CPSF1-204ENST00000529288 C1orf141Q5JVX7 400 aa17.71■□□□□ 0.43
CPSF1-204ENST00000529288 KIF7Q2M1P5 1343 aa17.71■□□□□ 0.42
CPSF1-204ENST00000529288 MTHFSP49914 203 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms