RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 LAS1LQ9Y4W2 734 aaKnown RBP27.3■■□□□ 1.96
VPS28-208ENST00000527797 FAM208AQ9UK61 1670 aaKnown RBP27.29■■□□□ 1.96
VPS28-208ENST00000527797 COL5A2P05997 1499 aaPredicted RBP27.29■■□□□ 1.96
VPS28-208ENST00000527797 EVA1CP58658 441 aa27.28■■□□□ 1.96
VPS28-208ENST00000527797 MAP3K5Q99683 1374 aa27.28■■□□□ 1.96
VPS28-208ENST00000527797 ZNF853P0CG23 659 aa27.27■■□□□ 1.96
VPS28-208ENST00000527797 TOM1L2Q6ZVM7 507 aa27.27■■□□□ 1.96
VPS28-208ENST00000527797 CFAP44Q96MT7 982 aa27.27■■□□□ 1.96
VPS28-208ENST00000527797 TATP17735 454 aaPredicted RBP27.26■■□□□ 1.95
VPS28-208ENST00000527797 RRP1P56182 461 aaKnown RBP27.25■■□□□ 1.95
VPS28-208ENST00000527797 STRN4Q9NRL3 753 aa27.25■■□□□ 1.95
VPS28-208ENST00000527797 CT47B1P0C2W7 299 aaPredicted RBP27.24■■□□□ 1.95
VPS28-208ENST00000527797 ZNF530Q6P9A1 599 aaPredicted RBP27.24■■□□□ 1.95
VPS28-208ENST00000527797 EXOSC9Q06265 439 aaKnown RBP27.23■■□□□ 1.95
VPS28-208ENST00000527797 BTG4Q9NY30 223 aa27.23■■□□□ 1.95
VPS28-208ENST00000527797 PLEKHG2Q9H7P9 1386 aa27.23■■□□□ 1.95
VPS28-208ENST00000527797 IRX6P78412 446 aaPredicted RBP27.23■■□□□ 1.95
VPS28-208ENST00000527797 AKAP4Q5JQC9 854 aa27.23■■□□□ 1.95
VPS28-208ENST00000527797 CARD10Q9BWT7 1032 aa27.22■■□□□ 1.95
VPS28-208ENST00000527797 MBIPQ9NS73 344 aa27.22■■□□□ 1.95
VPS28-208ENST00000527797 COL14A1Q05707 1796 aaKnown RBP27.22■■□□□ 1.95
VPS28-208ENST00000527797 CRB1P82279 1406 aa27.21■■□□□ 1.95
VPS28-208ENST00000527797 C1orf141Q5JVX7 400 aa27.21■■□□□ 1.95
VPS28-208ENST00000527797 JCADQ9P266 1359 aa27.2■■□□□ 1.95
VPS28-208ENST00000527797 NUTM2BA6NNL0 878 aaPredicted RBP27.2■■□□□ 1.95
VPS28-208ENST00000527797 NUTM2EB1AL46 878 aaPredicted RBP27.2■■□□□ 1.95
VPS28-208ENST00000527797 LARP1Q6PKG0 1096 aaKnown RBP27.2■■□□□ 1.95
VPS28-208ENST00000527797 NUTM2AQ8IVF1 878 aaPredicted RBP27.2■■□□□ 1.95
VPS28-208ENST00000527797 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.2■■□□□ 1.95
VPS28-208ENST00000527797 SPG7Q9UQ90 795 aa27.2■■□□□ 1.95
VPS28-208ENST00000527797 CHL1O00533 1208 aa27.19■■□□□ 1.94
VPS28-208ENST00000527797 ADAMTS2O95450 1211 aa27.19■■□□□ 1.94
VPS28-208ENST00000527797 IL17REQ8NFR9 667 aa27.19■■□□□ 1.94
VPS28-208ENST00000527797 MEGF6O75095 1541 aa27.18■■□□□ 1.94
VPS28-208ENST00000527797 RARSP54136 660 aaKnown RBP27.16■■□□□ 1.94
VPS28-208ENST00000527797 ERICH6BQ5W0A0 696 aa27.16■■□□□ 1.94
VPS28-208ENST00000527797 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.16■■□□□ 1.94
VPS28-208ENST00000527797 BCAR3O75815 825 aa27.14■■□□□ 1.94
VPS28-208ENST00000527797 CEMIPQ8WUJ3 1361 aa27.14■■□□□ 1.93
VPS28-208ENST00000527797 PLIN1O60240 522 aa27.12■■□□□ 1.93
VPS28-208ENST00000527797 IL2RBP14784 551 aa27.12■■□□□ 1.93
VPS28-208ENST00000527797 LGR6Q9HBX8 967 aa27.12■■□□□ 1.93
VPS28-208ENST00000527797 OVOS2A0A0G2JMS6 1433 aa27.12■■□□□ 1.93
VPS28-208ENST00000527797 TAF7Q15545 349 aaPredicted RBP27.12■■□□□ 1.93
VPS28-208ENST00000527797 MPRIPQ6WCQ1 1025 aa27.12■■□□□ 1.93
VPS28-208ENST00000527797 BABAM1Q9NWV8 329 aa27.12■■□□□ 1.93
VPS28-208ENST00000527797 TSPYL4Q9UJ04 414 aa27.12■■□□□ 1.93
VPS28-208ENST00000527797 RNMTO43148 476 aaKnown RBP27.11■■□□□ 1.93
VPS28-208ENST00000527797 IFNL2Q8IZJ0 200 aa27.11■■□□□ 1.93
VPS28-208ENST00000527797 ZNF428Q96B54 188 aa27.11■■□□□ 1.93
VPS28-208ENST00000527797 LRRC37A3O60309 1634 aa27.11■■□□□ 1.93
VPS28-208ENST00000527797 SPATA31A6Q5VVP1 1343 aa27.1■■□□□ 1.93
VPS28-208ENST00000527797 PHKG2P15735 406 aa27.09■■□□□ 1.93
VPS28-208ENST00000527797 MIS18AQ9NYP9 233 aa27.09■■□□□ 1.93
VPS28-208ENST00000527797 HSPA1LP34931 641 aa27.08■■□□□ 1.93
VPS28-208ENST00000527797 USP35Q9P2H5 1018 aa27.08■■□□□ 1.93
VPS28-208ENST00000527797 VAMP4O75379 141 aa27.08■■□□□ 1.93
VPS28-208ENST00000527797 TEFQ10587 303 aa27.08■■□□□ 1.93
VPS28-208ENST00000527797 TWISTNBQ3B726 338 aaPredicted RBP27.08■■□□□ 1.93
VPS28-208ENST00000527797 TSPYL6Q8N831 410 aa27.08■■□□□ 1.93
VPS28-208ENST00000527797 C8orf58Q8NAV2 365 aa27.08■■□□□ 1.93
VPS28-208ENST00000527797 ZCRB1Q8TBF4 217 aaKnown RBP27.08■■□□□ 1.93
VPS28-208ENST00000527797 ALDH1L2Q3SY69 923 aa27.06■■□□□ 1.92
VPS28-208ENST00000527797 PARP4Q9UKK3 1724 aaKnown RBP27.05■■□□□ 1.92
VPS28-208ENST00000527797 ELL2O00472 640 aaPredicted RBP27.05■■□□□ 1.92
VPS28-208ENST00000527797 HSP90AB1P08238 724 aaKnown RBP27.05■■□□□ 1.92
VPS28-208ENST00000527797 BCL2L13Q9BXK5 485 aa27.05■■□□□ 1.92
VPS28-208ENST00000527797 CYP27B1O15528 508 aa27.05■■□□□ 1.92
VPS28-208ENST00000527797 SMC4Q9NTJ3 1288 aa27.05■■□□□ 1.92
VPS28-208ENST00000527797 PCDH11XQ9BZA7 1347 aa27.04■■□□□ 1.92
VPS28-208ENST00000527797 PCDH11YQ9BZA8 1340 aa27.04■■□□□ 1.92
VPS28-208ENST00000527797 PLCH1Q4KWH8 1693 aa27.04■■□□□ 1.92
VPS28-208ENST00000527797 PKD1L3Q7Z443 1732 aa27.04■■□□□ 1.92
VPS28-208ENST00000527797 CANXP27824 592 aaKnown RBP27.04■■□□□ 1.92
VPS28-208ENST00000527797 SSH1Q8WYL5 1049 aa27.04■■□□□ 1.92
VPS28-208ENST00000527797 SLIT2O94813 1529 aa27.03■■□□□ 1.92
VPS28-208ENST00000527797 FRAT1Q92837 279 aaPredicted RBP27.02■■□□□ 1.92
VPS28-208ENST00000527797 DCAF5Q96JK2 942 aa27.02■■□□□ 1.92
VPS28-208ENST00000527797 NGLY1Q96IV0 654 aa27.01■■□□□ 1.91
VPS28-208ENST00000527797 BTBD11A6QL63 1104 aa27■■□□□ 1.91
VPS28-208ENST00000527797 KRT24Q2M2I5 525 aa27■■□□□ 1.91
VPS28-208ENST00000527797 C8orf37Q96NL8 207 aa27■■□□□ 1.91
VPS28-208ENST00000527797 C20orf194Q5TEA3 1177 aa26.99■■□□□ 1.91
VPS28-208ENST00000527797 KDM6AO15550 1401 aaPredicted RBP26.99■■□□□ 1.91
VPS28-208ENST00000527797 ADAMTS7Q9UKP4 1686 aa26.98■■□□□ 1.91
VPS28-208ENST00000527797 PPP4R2Q9NY27 417 aa26.98■■□□□ 1.91
VPS28-208ENST00000527797 THRAP3Q9Y2W1 955 aaKnown RBP26.98■■□□□ 1.91
VPS28-208ENST00000527797 NRAPQ86VF7 1730 aa26.98■■□□□ 1.91
VPS28-208ENST00000527797 SPATA31A1Q5TZJ5 1347 aa26.98■■□□□ 1.91
VPS28-208ENST00000527797 PDE3AQ14432 1141 aa26.98■■□□□ 1.91
VPS28-208ENST00000527797 BRPF1P55201 1214 aaPredicted RBP26.97■■□□□ 1.91
VPS28-208ENST00000527797 UNC5CLQ8IV45 518 aa26.97■■□□□ 1.91
VPS28-208ENST00000527797 EXOC6Q8TAG9 804 aa26.97■■□□□ 1.91
VPS28-208ENST00000527797 SLC52A2Q9HAB3 445 aa26.97■■□□□ 1.91
VPS28-208ENST00000527797 NWD2Q9ULI1 1742 aa26.97■■□□□ 1.91
VPS28-208ENST00000527797 DISP2A7MBM2 1401 aa26.96■■□□□ 1.91
VPS28-208ENST00000527797 ZKSCAN2Q63HK3 967 aa26.96■■□□□ 1.91
VPS28-208ENST00000527797 DDX54Q8TDD1 881 aaKnown RBP26.96■■□□□ 1.91
VPS28-208ENST00000527797 CDCA7Q9BWT1 371 aaPredicted RBP26.96■■□□□ 1.91
VPS28-208ENST00000527797 SOS1Q07889 1333 aaPredicted RBP26.95■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms